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Query: 4adx_7 mol:protein length:126 RPL14E, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEHIVRQVIPIRRVHLTKFQIDNVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKSKLast
1 -84.8004adx_7 mol:protein length:126 RPL14E  ali model  100  1MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEHIVRQVIPIRRVHLTKFQIDNVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKSK 126
2 -75.7003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  42  9ASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPGVPRQAINLGQVVLTPLTF-ALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKA. 134
3 -73.0005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  34  1MPFKQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVLDAPRQTIPIQRLKLTDYVA-KIQRNAAPEAAKAAAK--DFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKE. 124
4 -72.4006d90_M mol:protein length:198 eL14  ali model follow..  39  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPRVRRQAMPFKCMQLTDFIL-KFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNE. 126
5 -69.9003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  32  19LLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAGVPRMVIPLKRLKLLKERI-KINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTI. 145
6 -69.3005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  37  3.LFTRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGVKRQSMPVRRIALTDQYL-KIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQK. 128
7 -67.6005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  30  1....NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENPKMWRHVQNLKNVEPLKFSV-ELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKV. 123
8 -67.5003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  28  59MVKSHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENPKMWRHVQNLKNVEPLKYCV-SVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKV. 185
9 -57.6003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  39  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPQVRRQAMPFKCMQLTDFIL-KFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLE. 126
10 -56.3004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  38  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPQVRRQAMPFKCMQLTDFIL-KFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEV 127
11 -56.1005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  39  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPRVRRQAMPFKCMQLTDFIL-KFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNE. 126
12 -37.0002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  26  2....PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPGVKRRRVNILHLEPTDKKID-IQKGASDEEVKKKLEESNLTEYMKEKIKIRMPTL.............................. 96
13 -17.4003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  20  51...RKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFM.................. 159
14 -16.4005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  25  52..TRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPVVPVNEISQDYLIATSTSID-VAANATEAQVEAAAAKVPEMVDYLKAPFT................................... 139
15 -13.2005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  20  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPGVPLRRVNARYVIATSTKVSNVEKFNVEYFAKEXXXXXXXXXXXXXXXXXXKEIKAERVEDQKVVDKALIAEIKK.......... 151
16 -13.1003jbs_A mol:protein length:176 eL6  ali model follow..  20  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPGVPLRRVNARYVIATSTKVSNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKK.......... 151
17 -11.0003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  13  89...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPRVPLRRTHQKFVIATSTKID----------ISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQ. 204
18 -10.8005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  19  5..LRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLISGPGVPIRRIDSRYIIATSTKVDDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKTAKAAPKGIVSDARAQLQKKVDAA. 136
19 -10.5003j92_E mol:protein length:284 eL6  ali model follow..  13  137...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPRVPLRRTHQKFVIATSTKID----------ISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQ. 252
20 -10.3005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  16  1....KFLKPGKVVIVTSGRYAGKKAVIVQNTDS--------KSKERPYGHSLIAGMKKYPKKVVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKL. 113
21 -10.3005t2a_t mol:protein length:195 eL6  ali model follow..  19  30...RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVSGPGVPIRRIDSRYVIATSTTVDDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDARAQLQKKIDAA. 160
22 -10.3003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  19  30...RKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVSGPGVPIRRIDSRYVIATSTKVDDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKTSKAGKKTPVSDARAQLQKKIDAA. 160
23 -10.2005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  14  144...RASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPRVPLRRTHQKFVIATSTKID----------ISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQ. 259
24 -10.1005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  17  2....SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGYAIVMGIE---KAVNFNHVMLTRHNVK---------EDFFKKISVEKVVAALKDAPAKKALLTEYAAVLR--QKYLNNKMA........... 131
25 -10.0003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  14  3....KFLKPGKVVIVTAGRYAGHKAVIVQNSDI--------ATKERPYGRALLAGIKKYPKKVVRGMSKQTIARRSQVGVFLRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHV. 115
26 -9.7903jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  33  3....KFLKAGKVAVVVRGRYAGKKVVIVKPHDEG............................................................................................ 32
27 -9.7603j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  23  3....KLLKPGKVIIILNGRRAGKKAVIVNTYEGQYCLVAG-----KCINVNHILPTRYQVA-------------DFDIKSLASDDVLKSKNKKKEVKKLGKIFR--DKFLEPVNKKT......... 130
28 -9.6705xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  35  3....KLLKSGRVVVVLNGRHAGKKGVVVNTWEGSK........................................................................................... 33
29 -9.6504d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  14  141...RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPRVPLRRTHQKFVIATSTKID----------ISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQ. 256
30 -9.6003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  40  3....KFMKPGKVVLVLAGRYSGRKAVIVKNIDDG............................................................................................ 32
31 -9.1202do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  20  14..LRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCS..................................................................... 68
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.