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Query: 4cfi_A mol:protein length:258 FLAGELLIN, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DGVSILQTASSGLTSLTNSLQRIRQLAVQASNGPLSASDASALQQEVAQQISEVNRIASQTNYNGKNILDGSAGTLSFQVGANVGQTVSVDLTQSMSAAKIGGGMVQTGQTLGTIKVAIDSSGAAWSSGSTGQETTQINVVSDGKGGFTFTDQNNQALSSTAVTAVFGSSTAGTGTAASPSFQTLALSTSATSALSATDQANATAMVAQINAVNKPQTVSNLDISTQTGAYQAMVSIDNALATVNNLQATLGAAQNRFLast
1 -77.6004cfi_A mol:protein length:258 FLAGELLIN  ali model  100  1DGVSILQTASSGLTSLTNSLQRIRQLAVQASNGPLSASDASALQQEVAQQISEVNRIASQTNYNGKNILDGSAGTLSFQVGANVGQTVSVDLTQSMSAAKIGGGMVQTGQTLGTIKVAIDSSGAAWSSGSTGQETTQINVVSDGKGGFTFTDQNNQALSSTAVTAVFGSSTAGTGTAASPSFQTLALSTSATSALSATDQANATAMVAQINAVNKPQTVSNLDISTQTGAYQAMVSIDNALATVNNLQATLGAAQNRF 258
2 -62.1004nx9_A mol:protein length:293 Flagellin  ali model follow..  30  21DGISLAQTAEGALQQSTNILQRMRDLSLQSANGSNSDSERTALNGEVKQLQKELDRISNTTTFGGRKLLDGSFGVASFQVGSAANEIISVGIDEMSAESLNGTYFKADGG--GAVTAATASGTVDIAIDITGGSAVNVKVDMKGNETAEQAAAKIAAAVNDANVGIGAFTDGAQISYVSKASADGTTSAVSGVAITDTGSTGAGTAAGTTTFTEANDTVAKIDISTAKGAQSAVLVIDEAIKQIDAQRADLGAVQNRF 276
3 -57.5003k8v_A mol:protein length:351 Flagellin homolog  ali model follow..  30  50DGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGANAGETIGVSKIMNAQTASLGGSLTRTTSTIDATDLTKYDTAMAAGDLTINGVDV------GKIDAASTAQERAAQLTEAINRVSSQTNVGASYDKTTGQVTLTSNAAIAVAGAANDATVAGWANNATTGTATTTTGINSLTVSSFTNAQQTITQIDNALKDINTARADLGAVQNRF 301
4 -56.0003k8w_A mol:protein length:326 Flagellin homolog  ali model follow..  30  50DGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGANAGETIGVSKIMNAQTASLGGSLTRTTSTIDATDLTKYDTAMAAGDLTINGVDV------GKIDAASTAQERAAQLTEAINRVSSQTNVGASYDKTTGQVTLTSNAAIAVAGAANDATVAGWANNATTGTATTTTGINSLTVSSFTNAQQTITQIDNALKDINTARADLGAVQNRF 301
5 -51.6003v47_C mol:protein length:425 Flagellin  ali model follow..  25  29DGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDINSGAVVTDAVAPDKVYVNAANGQLTTDDAEANNAVKGESKITVNGAEYTANATGDKITLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRF 402
6 -47.9005wk5_A mol:protein length:488 B-type flagellin  ali model follow..  31  70DGISLAQTAEGALQQSTNILQRIRDLALQSANGSNSDADRAALQKEVAAQQAELTRISDTTTFGGRKLLDGSFGTTSFQVGSNAYETIDISLQNASASAIGSYQVGSNGAGTVASVAGTATASGIASGTVNLVGGGQVKNIAIAAGDSAKAIAEKMDGAIPNLSARARTVFTAAGTAATTTIVTGYVQLNSPTAYSVSGTGTQASQVFGNASAAQKSSVASVDISTADGAQNAIAVVDNALAAIDAQRADLGAVQNRF 426
7 -46.3001ucu_A mol:protein length:494 phase 1 Flagellin  ali model follow..  26  69DGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNT-LTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLGAVQNRF 432
8 -46.1005maw_D mol:protein length:311 Flagellin  ali model follow..  26  69DGISLIQTAEGALTETHAILQRVRELVVQAGNTGDKATDLQSIQDEISALTDEIDGISNRTEFNGKKLLDGTYKVDTATPANQKNLVFQIGANATQQISVNIEDMGADA-------------------------------------------------------------------------------------LGIKEADGSIAALHSVNDLDVTKFADNAADTADIGFDAQLKVVDEAINQVSSQRAKLGAVQNRL 243
9 -45.9005z7q_A mol:protein length:176 Flagellin  ali model follow..  29  15DAMSLLRTGDAALGSISNILLRMRDLATQAANGTNNATDTDSLDKEYVQLKDEIDHIAGKTNFNGNSFLDTTATPPGKDIEIQLSDASGDTMTLKAID------------------------------------------------------------------------------------------------------------------TKSLTTGTLTNLKDRATAETEITKLDTAIQKINDERATFGSQLNRL 158
10 -44.7005gy2_C mol:protein length:183 Flagellin  ali model follow..  32  21DGISLIQTAEGALTETHAILQRMRELTVQAGNGTQQAEDLGAIKDEMDALIEEIDGISNRTEFNGKKLLDGTNSTDGFTFQIGANAGQQLNV-----------------------------------------------------------------------------------------------------------------KIDSMSSTALGVNALDVTDFAATAFDDQLKSIDTAINTVSTQRAKLGAVQNRL 166
11 -44.3005wju_A mol:protein length:304 Flagellin  ali model follow..  25  68DGISLIQTAEGALTETHAILQRVRELVVQAGNTGDKATDLQSIQDEISALTDEIDGISNRTEFHGKKLLDGTYKVDTATPANQKNLVFQIGANATQQISV-------------------------------------------------------------------------------------NIEDMGADALGIKEADGSIAALHSVNDLDVTKFADNAADCADIGFDAQLKVVDEAINQVSSQRAKLGAVQNRL 242
12 -39.3005yti_A mol:protein length:411 Flagellar hook associated protein type 3 FlgL  ali model follow..  22  68AADSALRLEEGILSNAVNSLHRLREIQIQAGNPSLSEEDRKTLAVEAQALLNQLLDYANTKDSNGSYMFSGSKSLTQPVSLNLSGQYVYNGDSTQRFQAVTTSLLVAVNDTGDNVFMRIPSGNGRFAIRETLTPNTGTASVSSGSVTNEAAFVPDNYTMTFALNSQGNLVVMVSGTLSGNVIPPSGLPDDAPLYQEGSAIGFNGMEMVVSNNLNKPYTSSVEKAATQTENNQLLAQIDSALGHILSVQSDLGARLNQL 352
13 -32.2006b5b_F mol:protein length:566 Flagellin  ali model follow..  28  161DGISLAQVAEGAMQETTNILQRMRELSVQAANSTNNSSDRSSIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSIGSTKASSLGGIATATGTEVAGAAAADITIAIGGGAATSINSSANFTGALNGQDATSAYAKAAAINDAGIGGLSVTASTSGTQAVGAIGGTAGDTYNLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRIDAALNSVNSNRANMGALQNRF 503
14 -28.3003pwx_A mol:protein length:239 Putative flagellar hook-associated protein  ali model follow..  13  32NLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFNAQDEEGHFLFSGTKTDTAALNKSSGAYVVEGNSDVRVVTVAKGVTMDSNMTAQEILDIGGGKNVLNQIDALIAE-------------------------------------------------------------------------------------FEKPSPNFQAEVDASLNAIDDTMANVLGAMTEIGGRHNNL 204
15 -28.2002d4x_A mol:protein length:248 Flagellar hook-associated protein 3  ali model follow..  15  30FATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAA----------------------------------------------------------------------DQATGGYHGGEKSVTQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSEL 219
16 -26.1005kay_A mol:protein length:201 Spelter  ali model follow..  15  9FATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAA--HGGEKSVTQQVDSAITLEIGHTGAQIFNSICECAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKE---------------------------------------------------------------------------KAAAAIDKTNRGLKNSLHNVLEVRWELEWFLELL 198
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.