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Query: 4cgk_A mol:protein length:392 SECRETED 45 KDA PROTEIN, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKKILASLLLSTVMVSQVAVLTTAHAETTDDKIAAQDNKISNLTAQQQEAQKQVDQIQEQVSAIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTSYINTIVNSKSITEAISRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAAELSLAAEKATAEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQSVLASANTNLTAQVQAVSESAAAPVRAKVRPTYSTNASSYPIGECTWGVKTLAPWAGDYWGNGAQWATSAAAAGFRTGSTPQVGAIACWNDGGYGHVAVVTAVESTTRIQVSESNYAGNRTIGNHRGWFNPTTTSEGFVTYIYADLast
1 -66.2004cgk_A mol:protein length:392 SECRETED 45 KDA PROTEIN  ali model  100  1MKKKILASLLLSTVMVSQVAVLTTAHAETTDDKIAAQDNKISNLTAQQQEAQKQVDQIQEQVSAIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTSYINTIVNSKSITEAISRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAAELSLAAEKATAEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQSVLASANTNLTAQVQAVSESAAAPVRAKVRPTYSTNASSYPIGECTWGVKTLAPWAGDYWGNGAQWATSAAAAGFRTGSTPQVGAIACWNDGGYGHVAVVTAVESTTRIQVSESNYAGNRTIGNHRGWFNPTTTSEGFVTYIYAD 392
2 -20.9004q4g_X mol:protein length:472 Peptidoglycan endopeptidase RipA  ali model follow..  12  1MRRNVRPAIPSALSVALLVCTPGLATADPQTDTIAALIADVAKANQRLQDLSDEVQAEQESVNKAMVDVETARDNAAAAEDDLEVSQRAVKDANAAIAAAQHRFDTFAAATYMNGPSVS----YLSASSPDEIIATVTAAKTLSASSQAVMANLQRARTERVNTESAARLAKQKADKAAADAKASQDAAVAALTETRRKFDEQREEVQRLAAERDAAQARLQAARLVAWSSEGGQGAPPFRMWDPGSGPAGGRAWDGLWDPTLPMIPSANIPGDPIAVSGAGTVGFDASGLVLYSFAGVGIKLPHYSGSQY-------NLGRKIPSQMRRGDVIFYGPNGSQHVTI---YLGNGQML................................... 443
3 -18.3002k3a_A mol:protein length:155 CHAP domain protein  ali model follow..  28  11.....................................................................................................................................................................................................................................................TAGIGAAIVGLDHGNEADAAEQTQPTNQSTTQSTSGSSANLYTAGQCTWYVYDKGGNIGSTWGNANNWASAASSAGYTVNNSPEAGSILQSTAGGYGHVAYVENVNSDGSVEVSEMNYNGGPFSVSERTI---SAGEASSYNYIHLN 155
4 -16.4002lrj_A mol:protein length:113 Staphyloxanthin biosynthesis protein, putative  ali model follow..  32  17...................................................................................................................................................................................................................................................................................................TWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTI---SASEAGNYNYIHI. 113
5 -12.8002tma_A mol:protein length:284 TROPOMYOSIN  ali model follow..  12  35.........................RSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS....................................................................................................................................................... 252
6 -12.6005xg2_A mol:protein length:260 Chromosome partition protein Smc  ali model follow..  10  39.........................TFAVAREEFDTVVKELEEARKSLYEGEARIKRAEEEKERLKAEILTGEARLPGLRERAENLRRLVEEKRAEISELERRLSSITSKRSGGSLESQSFELRIKLSDLEKELELARDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKAENPEARELTEKIRAVEKEIAALREELSRVEGKLEGLESKVDAGSSS....................................................................................................................................................... 256
7 -12.3006gao_A mol:protein length:240 Outer capsid protein sigma-1  ali model follow..  9  1.......................GSHMEEIKKQVQVNVDDIRAANIKLDGLGRQIADISNSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSISSLGDRINAVEPRVDSLDTVTSNLTGRTSTADVGSLRTELAALTTRVTTEVTRLDGLI---NSGQNSIGELSTRLSNVETSMVTTAGRGLQKNGNTLNVIVGNGMWFNSSNQLQLDLSGQSKGVGFVGTGMVVKIDT.............................................................................................................................................................. 210
8 -12.0001c1g_A mol:protein length:284 TROPOMYOSIN  ali model follow..  12  36..........................SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK........................................................................................................................................................... 248
9 -11.7006gap_A mol:protein length:261 Outer capsid protein sigma-1  ali model follow..  14  42......................ITQGLDDANKRIIALEQSRDDLVASVSDAQLAISRLESSIGALQTVVNGLDSSVTQLGARVGQLETGLAELRVDHDNLVARVDTAERNIGSLTTELSTLTLRVTSIQ-ADFESRISTLERTAVTSAGAPLSIRNNRMTMGLNDGLTLSGNNLAIRLPGNTGLNIQNGGLQFRFNTDQFQIVNNNLTLKTTVFDSINSRIGATEQSYVASAVTPLR........................................................................................................................................................... 255
10 -11.0004olk_A mol:protein length:168 Endolysin  ali model follow..  16  1.......................................................................................................................................................................................................................................SNAMAKTQAEINKRLDAYAKGTVDSPYRIKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKISTVPKKGWIAVFTSGQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTK----RVDNYYGLTHFIEIP 165
11 -10.8003lay_A mol:protein length:175 Zinc resistance-associated protein  ali model follow..  9  19MKRNNKSAIALIALSLLALSSGAAFAGHHQQGGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA......................................................................................................................................................................................................................................................................................... 137
12 -10.6004csh_A mol:protein length:165 LYSK  ali model follow..  16  2...........................................................................................................................................................................................................................................AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKISTVPKKGWIAVFTSGQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTK----RVDNYYGLTHFIEIP 162
13 -10.4004zkp_A mol:protein length:237 Tail needle protein gp26  ali model follow..  13  64.......................QVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLNVTTSYSVGGKKVLGARQTWTAATGTANKGVFDADLTFAVSDTYTQSEIQAIANALITERRRTKAMEDALRAH........................................................................................................................................................................................................ 233
14 -10.4004lin_A mol:protein length:300 Tail needle protein gp26  ali model follow..  12  56...............IAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADVDDHESRIT-------TKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLNVTTSYSVGGKKVVGARQTGWTAATGTANKGVFDADLTFAVSDTYTQSE............................................................................................................................................................ 271
15 -10.3004ilo_A mol:protein length:257 CT398  ali model follow..  13  4MHDALQSIL-----------------------AIQELDIKMIRLMRVKKEHQNELAKIQALKTDIRRKVEEKEQEMEKLKDQIKGGEKRIQEISDQINKLENQQAA-----------------VKKMDEFNALTQEMTAANKERRTLEHQLSDL---MDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEGRSLLSQRTQLKETTDP................................................................................................................................................................................ 176
16 -10.2003na7_A mol:protein length:256 HP0958  ali model follow..  15  12................................EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE--------------------IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP................................................................................................................................................................................ 175
17 -10.1004clv_A mol:protein length:148 NICKEL-COBALT-CADMIUM RESISTANCE PROTEIN NCCX  ali model follow..  17  1MMKSRTFRLSVSTLVGALVGVLMAIVGEMLHDAVPLDSNEREILELKEEEFTARRREIESRLRAANGKLAESIAKNPQWSPEVEEATREVERAAADLQRATLVHVFEMRAGLKPEHRAAYDRVLVDA......................................................................................................................................................................................................................................................................... 142
18 -9.9605y05_A mol:protein length:262 msmeg_4306  ali model follow..  15  27................................TLSEVDAELARIAHRGKNLQKRLDELTAQRGEVNDRLAALGIALEDLDAQVAKYESEIDSVRQREDRDRALLEGGSVGAKQVTEIQHELETLQRRQASLELLEVMERREELMAERSEELRRVDELQTELTEAQQARDAALVELDQARHQCATRRDALVNAIDDQ.................................................................................................................................................................................................... 194
19 -9.7903zg1_A mol:protein length:148 NICKEL AND COBALT RESISTANCE PROTEIN CNRR  ali model follow..  14  1MMKSRTRRLSLSTLFGALLGVSVAAAWLYLHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEARAGLKPEHRPAYDRVLIDA......................................................................................................................................................................................................................................................................... 142
20 -9.7803c9i_A mol:protein length:242 Tail needle protein gp26  ali model follow..  13  69.......................QVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLNVTTSYSVGGKKVGARQTGWTAATGTANKGVFDADLTFAVSDTYTQSEIQAIANALITERRRTKAMEDALRAH........................................................................................................................................................................................................ 238
21 -9.7106gaj_A mol:protein length:133 Outer capsid protein sigma-1  ali model follow..  9  2..........................AEEIKKQVQVNVDDIRAANIKLDGLGRQIADISNSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSISSLGDRINA--------------------EPRVDSLDTVTSNLTGRTSTLEADVGSLRTELAALTTRVTTEVTRLDGLIN....................................................................................................................................................................................................................... 133
22 -9.5804n78_D mol:protein length:559 Wiskott-Aldrich syndrome protein family member 1  ali model follow..  10  1M-KRNID--------LCHTALPRGIKNE-TNISLANIIRQLSSLSKYAEELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSDRKTLPIPLQETYDVCEQPPPLNIL---TPYRD--DGKEGLKFYTNPSEKMLQDTEDKRKEKRKQKQKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQTYVDHMDGSYSLSALPFSQMSELLTRAEER......................................................................................................................................... 270
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.