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Query: 4d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVFLast
1 -110.0004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model  100  1MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
2 -106.0003j92_E mol:protein length:284 eL6  ali model follow..  94  1MAGEKAEKPGTKEKKPEAKKADAGGKVKK----AKKVKKGKPHCSRNPVLVRGIGRYSRSAMYSRMAMYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
3 -104.0005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  89  1MAGEKAAKPDATKKSPAKKADHARGKAKKKTLAEKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYAAPKSRIERKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF 291
4 -94.4003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  94  1.........................................PHCSRNPVLVRGIGRYSRSAMYSRMAMYKRK-----------YSAAVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 236
5 -77.0003jbs_A mol:protein length:176 eL6  ali model follow..  42  1..........................................................................................................MSAQKAPKWYPSEDVAALK----KTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEA--NLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
6 -76.9005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  39  4...........................................................................................................TAAALAKKRLRTRKPKRQLYKSPAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDKLLTQYLKTRFTLRGNMRPHEMKF 193
7 -75.8005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  45  1..........................................................................................................MSAQKAPKWYPSEDVAALK----KTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXX--XXXXXXXXKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
8 -73.6003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  27  1........................................................................................MTNTSNELKHYNVKGKKKVLVPVNAKKTINKKYFGR--KVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFELNYAQDIDDDSFIKTLEIKKKNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKF 221
9 -71.9005t2a_t mol:protein length:195 eL6  ali model follow..  33  2................................................................................................................AATKSAASAAKRKAAKKVSRKSPEYTTLRKSCAPGAIAIILAGRFRGRRAVILKQLHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGAKKTSKAGKKTLVSDARAQLQKKIDAALIAAIKKDAQGKGYLRSVFTVKPGDAPHRWNW 195
10 -71.9003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  33  2................................................................................................................AATKSAASAAKRKAAKKVSRKSPEYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEAAKKTSKAGKKTPVSDARAQLQKKIDAALIAAIKKDAQGKGYLRSVFTVKPGDAPHRWNW 195
11 -71.4005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  38  1.......................................................................................................................................EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPEKAGYLHSVFTIKPGDAPHRMRW 171
12 -56.5005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  25  2.......................................................................................AELLFISPIAKKDIKRPSWRGIPRI--SFTRPAVAAEVDPIAKPACNAKAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPV----VPVNEISQDYLIATSTSIDVA---------------------------------------------ANATEAQVEAAAAKVPEMVDYLKAPFTIKKGNRIHLMKF 151
13 -24.4002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  22  2.............................................................................................................................................PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKI........................................................... 89
14 -12.9003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  22  5...............................................................................................................................................LKPGKVIIILNGRRAGKKAVIVNTYEGQ-CLVAGPLKVNK--IKCINVNHILPTRYQVAND-FDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDI.................................... 137
15 -12.8005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  14  5............................................................................................................................................TRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGA-GVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDD-GKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK.......................... 134
16 -12.5005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  18  4...............................................................................................................................................LQAGRFVVMLQGRHAGKKAVVLAAYPEGTAIVMGPKKVTK--VKAVNFNHVMLTRHNVKDEDFFKKISVEKVVAALKDAPAKKALLTEYAAVLRQKYLNNKMA.......................................... 131
17 -12.0003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  15  12............................................................................................................................................WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGP---AGVPRQAINLGQVVLTPLTFALPR---AAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA............................ 138
18 -11.8005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  25  3...............................................................................................................................................LKPGKVVIVTSGRYAGKKAVIVQNTDSKSSLIAGPKKVVR--LRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRK............................................................ 112
19 -11.6005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  8  4............................................................................................................................................KQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVL---FDAPRQTIPIQRLKLTDYVAKIQR-AAAKDFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN............................. 127
20 -11.6003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  22  1...........................................................................................................................................MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIATALLAGPKKVVR--LRVVNHKHFLPTRYNVDMSKELRGINVSDASKRSRSKRLVRHVFQARYNAGSSM................................................. 126
21 -11.6003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  14  22............................................................................................................................................KRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGA-FITGVPRMVIPLKRLKLLKERIKINK---STKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQK............... 162
22 -11.6003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  19  1...........................................................................................................................................MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEG-ALVAGPLKVTK--IKVVNYNHLLPTRYTLDVKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQ................................................. 128
23 -11.5003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  25  1...........................................................................................................................................MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDG-ALVAGPRKVTA--VKVYNYNHLMPTRYSVDIPLDK-KDVFRDPALKRKARREAKVKFEERYKTGKNK................................................. 128
24 -11.4005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  18  1...........................................................................................................................................MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGAFCLVAGPLKVHK--LKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSK...................................... 135
25 -10.9005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  16  3...............................................................................................................................................IRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENP-ADKKMWRHVQNLKNVEPLKFSVELSR---EKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDENDKKKP....................... 132
26 -10.1003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  16  62............................................................................................................................................SHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENP-EDAKMWRHVQNLKNVEPLKYCVSVSR---SSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDAKTP....................... 194
27 -9.9103j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  20  4............................................................................................................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAK-------WAATRWAKKIEAREKKAKMTDFDRYKVMKARK......................... 117
28 -9.6705lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  23  4............................................................................................................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTK................................................................ 85
29 -9.6504adx_7 mol:protein length:126 RPL14E  ali model follow..  14  4............................................................................................................................................NKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE----HIVRQVIPIRRVHLTKFQIDLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS................................ 125
30 -9.5804d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  22  4............................................................................................................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TQVRRQAMPFKCMQLTDFILKFP.................................................................................... 65
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.