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Query: 4dgu_A mol:protein length:247 putative cell adhesion protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GDELQETSKEATNFSISIDDALSDPLTRTSNDLFPARNSITTGEVISMAASGQDYTPFIVGKDSRAWNEIGTATGTVTFYAHYPALTDEAATRSGGNKRYLKGGQEHLFGTAEAAPGSQNVSLKFKRMTVPVIILDENDRPYEGEAKVELSLKNEGTQDLLNGTIEINENALSENIEVKKVSEGVTTNVLPQKINAGEEIGTITVGGVTQKISAVEDLDLKAGSTLSVRLSKKFGGGIIDGNVPLYRLast
1 -92.8004dgu_A mol:protein length:247 putative cell adhesion protein  ali model  100  1GDELQETSKEATNFSISIDDALSDPLTRTSNDLFPARNSITTGEVISMAASGQDYTPFIVGKDSRAWNEIGTATGTVTFYAHYPALTDEAATRSGGNKRYLKGGQEHLFGTAEAAPGSQNVSLKFKRMTVPVIILDENDRPYEGEAKVELSLKNEGTQDLLNGTIEINENALSENIEVKKVSEGVTTNVLPQKINAGEEIGTITVGGVTQKISAVEDLDLKAGSTLSVRLSKKFGGGIIDGNVPLYR 247
2 -62.9003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  12  1GDEESDRAYKPIEIYGNINEVVNNQETRAVGAAWGSDDRIGVTVEADEDNATANNIQYRNETGGSFRVVRLKGEGEFTLNAYYPYQGAAKTISGADQTTDKQPQIDFLFAQATGVRAESPVTFDFSHKMTKIILKFKATNGANNMKVYLKSLQLEGSFNVTTGEAVAKSGATPNSAKPAEGEMTASIILFPQDM-PEKVLLEVRMNDETYTQYMP-VQNLESGHAYPYNVTFENPAMTIKAEIEDWI 284
3 -61.9004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  14  1GGENTTDGRVALEATSGIR-----MNTRAYDKTWEAGDAIGIYMLNGDATDGNGNRKYTTAQTAENGS-FPVDASQRDFVAYYPYRETLADGNVDVSVQTPQKDIDLMGAAKVKDKTDPKVAFVFTHKLVKLDITIKADGTLAGTTVSISNQQTAATYNVVTGGDATVTTGTTKEIVLHTDGLKAEGIVLPAASTAGMALTFTVPGLEGQAFHWDQSKAFVAGSKYLYTITISKAGVEVSSKVEDWT 270
4 -60.5003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  14  1GEQEDKVSGEK---TLAVVSASSDDRPSTRGIINDNTYALGVFRTTANTYAPLYNVKHIYSGGEWGADDIKVDYRNASFFAYYPYHTATGNYAGTLQAQLFNAGEDICYGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNINFYLTRSLDIASTAGATGGSAVAAGYVATGKSVTYEYMFPPQPLDGSKLTILVTVDGVTRSCDISLGSSLDSGKYYGVSLTFTDVGIILSSVVTVNN 278
5 -57.4003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  10  1GDGRWKASALRVPLQVSSAVIKQEVVTRLADPVPLTEGAIGIFLSGTEPESGQDNRKYVYSEGHWGPPTIYLVGNDADVCAYYPYKDSTDKTVIPLQSQDYVETEDIYYALNTINGFTPAITFDMVHAYSLVELKISRENYISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVGESYVCRVLMIPVPLKIERTDVSLVIDGQQMLVEIPYSGEFRQGEKYVIGLKIKGTEIVPTVKALEWE 295
6 -47.6004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  13  1GEMTEMNPDTNRTIGLDVYTEVQTRGTETTTSTLKANAGFGIFAYQTSSAGWNYNEHATWTSDSWGYTNWPIDDKKITFFAYAPYESKPEVGTDQKTSNNWKDMIDLVTDCHTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDPGSTTLYNKAVYKFDNDTWEAISPDASYFSTTALFSDTEALYFIPVNNKNGDLKLKINYDIVTKVTDSLPKNTFKKGTKHTYVLTIKMNAIKIEDNMEGWT 348
7 -44.3004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  9  5SPEEDMEDRVRIDPVAGGYYPSPSAQTRGATPDGETLKDRPIFLLEDGTSGSSLLYPCEVDDNGAVITPLYMKAGTYYFRILSPAKALNLLATDDRYTQTAMTAVTITKIDETLNNVQTLYLPPIINQTARMQFTVRAGEGVHAEGIEISGIQQPLDNTTSFDWVNGDVLPVKVATRNADNSLVAHTGVLPTDARSHSISVLLNLNGNPTQYQMLTGLYLTAGHSYNYTATVKISNTVLTWQNRSWT 320
8 -34.5004eps_A mol:protein length:510 hypothetical protein  ali model follow..  15  1GEEEVPGNVNGIVLNVTDTGISNEPSTRTEDTTFTQGDQIGLFAVKDGAILDENNMPFTFNGSSWSGKPYDDRLVGVNFYAYYPYQSEELTTEQSDQK--AYAKQDLMTSNATAENGNYSLSFQLTHRMSLVVVKLPSTRYIFTDAAMPEETPYVAMSVDVAFYLDNVEEGTKISPYYDAKKDEYRLLRKPSSENQ------IIGHYNDKQCTLDTAEKMKEGKYKRFVVDGGYKEVTHHLQVGDY. 273
9 -15.7005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  7  25.DPQPDPLQPDVYLLVNARAAHTNGEESINMDAEDFEDRVHVFDSNTGEKVAEHFSSSIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQVF-TQPLPFKPDGENNVKLQRVVAKLDVNIVEGV-ENLQKIELCNANVHYRLVPNQSEPIQFYGPVELRRVGATNQWLGY---MPEAIVESTKWWG-TRGGLVYDVPIKPSYTVYRNRHYIYRIKTLPDKIEVKYSICDWN 341
10 -14.3004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  6  9.GNNVPGEQAVLTIKLKGDGD-NQAQSRAAGPATDTEDNYLVFLFRE-GGALDCAPYEGSSNAAATITTGTTAAKKAYVVANTGALAGGLFATVKTETDLLAVTGSLMSGESEVKGTNAQVTVSLSFVAAKIQLIVKDNRKNMTGGTITITDDAAVLLFAGKKGRFFGSAAEGDFTINAGSTVFNHFYTFGNDGTTQPTILAIK-TSSPIFYPIDARHTIEPGKSYTVTVTLNGDVIEVTVTAAQWV 339
11 -14.1003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  8  8.NEDLPECRLSVKFKYDYNMEFADAFHAQVDK-FDKNGKYKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPLTDLKLKLKREASLIINKRMETLWYGEVINGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVMNTMRLMEDRKTRLVLTEKASGKRVNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWV 288
12 -13.9004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  8  1GKDEDPLEGAKLSVAVKASGTATKAYNPNDVNELEGEAYINVFNETGTELLGYKWEALSGAEHSAIIAD-KAVRARIIVLANVPRDLLSTVSTYDEFQTRLVDLSS---DLGDQNVDGISDPILLTRVAARIDLVNISTREVRIDAVGIYNMKTKSYYDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVK-QDHTKIFTAVDHNFIRRNYVYRLRIYFDGESLNIAVQVVGWG 346
13 -13.0004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  9  1GKDNEAEPVVETNATVSFI--IKSGESRAVGDDLTDATKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCKSGANRVLVVVLTGKSLNEVEALTTSLTAENQNAKNLIMTGKSDNLVSAGTPLAVTRVHAGISFAGVEVNKPADAKIAALVAKKDSKI-VLESKYDASNELRPTILCIYGKLLDKDGNPLTEPALTDAINAGFCDGDGTTYYPVQGQNKIVRNNHYKISLNITGPGLNVTCQVTPWV 361
14 -11.4003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  8  1GDDNEAPVLEKAQLALAIKSEEGAVTKTGETTPTDADNTLTVGVFGVDGWSVIYTKDATPNSDGTKDVEVYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINL-VKDISGKEVYGAGPVPLVRDVASIALAGADIGSFVLKEVFIASAKGVSSVASTEEW-NTKGEVKSGESNVNEAYANHTLLIVKGDYTYLPQGAKESITKENCYYAIPSKFYVQRNYKYEISLTIIGPGVSASVKVEPWN 393
15 -10.6005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  12  62........................................................................KDGLYTIFAW--KQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNHTRANLREYTNRVTVSVDSLPHPENYEIKLASSNGSYRFDYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSSQYAQNINLRCINDFDIRLVAHDTYVVVQIWINGWL 277
16 -10.6005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  10  10.DILDDYPVSGVDIKLDWDGVTDQLPEGVRVIFYPKNGD----GRKVDKYLSVRGGEMKVPPGRYSVVVYNYNTESIRIRGEESYETIEAYTGNCNGLGIEGTEKDSLYVLNEKSEEVLRLDWKLESVVKKYSFAVEAKGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFFTAFKQVKEMTMPTRMSTSESEKGAIILILKFIKTDNTVQEATIDVTEGGGGMGGNVDGWG 308
17 -10.4003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  11  1...............GDVAYELPAHTTRAQLSIDLVNNSMRFIVFGSTPSSNDILVVVIANEPQSLTSQLDGIANLLTLQEMIYDISSILNSDGQIISATGMPMTGVIRDISIAPDETKTVQMVIERAVARVDVFIEAIDGGAVTSVTLHNFSHDSYFVMGNVGNGTRDNADSSKNLFKSDYSDRLSISMANVLKGPSDIESVTKVDGTGSPTAQPFTEIRRNNVYQVTARVGKIGQILTISVEDWG 336
18 -9.6504qdg_A mol:protein length:310 Putative adhesin  ali model follow..  8  2ERIYEDLAPCPHGVSLRFIYDYNMEYANAFAKKVDC--TLLVYDENGNYVDTRIVTGTELQDENYRMK----KQGNYHFVAYGGLACNKSSFLMKYTPGEGTGYTDLQVETLATADLYSEGTVEMMKNTNNIRVVLQQPVDDKKFEFEITDDNILFSYDFTDEGREVVVAYAELSTSRLMVRDWYSPKLTVRRKADGVEIINIPLINSDLYASMDSQEFLDRESEWSMIFFLSPNLIKTYIKINDWT 302
19 -9.2903r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  10  1GEVPIGFDTDELSFDMSLVLLTGDMQTKASDPNYTYATTVAVFDKDGKRIYFKNFYSKDLGEMKTIGNL-GKEDKKVSVLVVANANNANNSPFDNLTTYDGVDNS-VKIGKSEYNQDNAPVTVSLIQLSAKIEYTGVYKK........................................................................................................... 180
20 -9.1204rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  6  1GDR-------SIEISIRVDDTKTGEAVRYERNQGSAAERLLLFDQSGATGNTFTGGTWLPDDMKVKLDMTQSEAGERKVYVV-----ANVDNAVKTALDAVANESDLMSGNKTFLANRLLDNVPLVRAIAKVELNISLSEKFQIVPIIVNGSLSEFKFRYVNNTSPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALP-GPELYRLPLPDKILRNHWYKYEVEI............... 305
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.