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Query: 4dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMMTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDPYFEEEDINPIVLNGLNTKTKSHDFFSMKGNGYKKATVEPLKDDDFYFEDEKEQILast
1 -111.0004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model  100  1MGSSSSGLVPRGSHMMTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDPYFEEEDINPIVLNGLNTKTKSHDFFSMKGNGYKKATVEPLKDDDFYFEDEKEQI 344
2 -96.1004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  57  2....................RAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEV-HAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKADDDFVFN...... 321
3 -95.2004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  47  1...............MQTYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESV-HAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAEIINEIYL------NGTALEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDPLFPDDDVNPIVMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDDYNYG...... 318
4 -93.6001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  41  1MSNEYD----EYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESV-HAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYN------GDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVILSSLSPNADENHDFFSGSGSSYVIGKAEDTTDDDWDF....... 329
5 -93.3003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  41  1..............MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAV-HARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYR------GDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMAEV-LAALSPNADENHDFFSGSGSSYVMGKAVETEDEDWNF....... 319
6 -91.4006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  35  1MGSSSSGLVEYAYFDQSQNMRAINWNKIVDEKDLEVWNRVTQNFWLPENIPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGV-HARSYGTIFSTLCTSEQIEEAHEWVVDNEALQARPKALIPFYT------ADDPLKSKIAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYESPFTKEETRI-FAQLSARADENHDFFSGSGSSYIIGTSEETLDEDWDF....... 349
7 -90.9006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  33  13YYNESVSPIEYAQQGFKGKMRSVNWNVVNDEKDLEVWNRITQNFWLPEKIPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAV-HARSFGSIFSTLCSSEQIEEAHEWVINTETLQERAKALIPYYV------NDDPLKSKVAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRI-FTQLSARADENHDFFSGNGSSYIMGVSEETEDDDWEF....... 345
8 -90.4001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  40  1..............MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAV-HARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILA------HYVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEALFPPEMADV-LAALSPNADENHDFFSGSGSSYVMGKTVETEDEDWNF....... 319
9 -87.7001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  15  13KERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENI-YSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWIS----NDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNP-------KIIEKIITEAVEIEKEYYSNSLPFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFM--EDVATAGKTTFFEKKVSDYQKASDMSKSATEINFDDD.... 344
10 -87.4002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  22  12...DTTASNASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMR-AAEYLTDSSLAALMSVLSFQEVV-HNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDGINPEDMETYISFIANKRAVQLGMEKPYPEINPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFDE........... 345
11 -85.4002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  20  21..SDFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAK-----WINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE-------NVVQNIVKEAVEVERSFICESLPIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWM--DLISLQGKTNFFEKRVADYQKSGVMAQKEQVFSLNTD.... 348
12 -84.9001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  42  2..........TGNAKLIDRVSAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESV-HAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQSYR------GDEPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEALFPRTDVNPAILSALSPNAD.................................. 296
13 -84.3003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  19  22..TNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALR----WIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE-------ERVREIIVDAVKIEQEFLTEALPVGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFM--ENISLEGKTNFFEKRVSEYQRFAVMAETTDNFTLDAD.... 350
14 -83.7002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  17  4...KAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIG----DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE-------ERVREIIINAVRIEQEFLTEALPVGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM--ENISLEGKTNFFEKRVGEYQRMGVMSSTENSFTLDAD.... 331
15 -83.5001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  19  4TFSATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETI-HSRSYTHIIRNIVNDP--SVVFDDIVTNEQIQKRAEGISSYYDESLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDEIAEECKQECYDLFVQAAQQEKDWADYLFRDGLNKDILCQYVEYITNIRMQAVGLDLPFNTRNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTNFQL....... 375
16 -82.9004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  20  22.GKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAV-HTHTFLYICESLGLDEK--EIFNAYNERAAIKAKDDFQMEITGKSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETI-DLNKEKNFFETRVIEYQHAASLT............... 359
17 -81.4001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  18  4TFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETI-HSRSYTHIIRNIVNDP--SVVFDDIVTNEQIQKRAEGISSYYDESLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIKQECYDLFVQAAQQEKDWADYLFRDGLNKDILCQYVEYITNIRMQAVGLDLPFNTRNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTNFQL....... 375
18 -80.8001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  17  60.SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRW----IGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAE-------QRVREIITNAVRIEQEFLTEALPIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFM--ENISLEGKTNFFEKRVGEYQRMGVMSNTENSFTLDAD.... 389
19 -80.5001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  18  4TFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETI-HSRSFTHIIRNIVNDPS--VVFDDIVTNEQIQKRAEGISSYYDESLRELKKKLYLCLMSVNALEAIRYYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMEECKQECYDLFVQAAQQEKDWADYLFRDGLNKDILCQYVEYITNIRMQAVGLDLPFQTSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTNFQL....... 375
20 -79.2001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  17  78VHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQ----DADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP-------AIVEKIVTEAVEIEQRYFLDALPVGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFM--ENISLAGKTNFFEKRVSDYQKAGVMSKSTKQFTFNED.... 412
21 -77.7006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  19  1MGSSSSGLVPRGSH-MSIFDKRVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFHALSLAEKTAVKNSLLAIAQIEVAVKSFWGN-IYEHFPKPEFNGLGSTFAECEFR-HSEAYSRLLEVLGYNDE----FEKLLDVPVIRRRVDYLSNVLKDKSQDNRKYMVSLILFSILIENVSLFSQFAILLSFTRKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSIAVESDILDWIFEESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVEDY-WFEEEVFANSLDDFFAKRPVEYTKHDKSITANDLF......... 338
22 -77.0002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  21  20..SDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAK-----WINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE-------EVVQNIVKEAVEVERSFICESLPCGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWM........................................... 309
23 -75.0002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  19  21...NESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA----DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE-------ERVREIIVDAVKIEQEFLTEALPVGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN................................. 320
24 -73.9001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  20  4TFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETI-HSRSYTHIIRNIVNDP--SVVFDDIVTNEQIQKRAEGISSYYDESLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIKQECYDLFVQAAQQEKDWADYLFRDGLNKDILCQYVEYITNIRMQAVGLDLPFQTSNPIPWINTWLV...................................... 340
25 -73.6003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  18  1.......MGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEAVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALR----WIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE-------ERVREIIINAVRIEQEFLTEALPVGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM........................................... 286
26 -73.0005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  16  101.........RALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKTGLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVR-HHDAYSHLLEILGLNEE----FKELKKKPVIMKRVHYLETSLKHKSDDDREYTESILLFALFIEHVSLFSQFLIIMAFKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWFDEEHNNLIKEMCLNSFEAESKVVDWIFEKFLPKAVINEFLKNRFNKSLEAIGLEKLFDIDEALL-WFDDEIIGTKHGDFFVKRSINYSKRTQSITSDDLF......... 430
27 -64.2003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  9  1.............MAGMTRTRSGSLAAGGLNWPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEGRLAEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKCVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQDLSKDDFLQYSTDKGMRRFGTISNARGRPVAE----IDVDYSPAQLEDTFADEDRRTLAAASA................. 317
28 -60.9004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  11  1MAVDDD----DKMVHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQGRLEVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRLYA-DDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELRYMDELWPHVIGYVDYLTELGKRQQQLEIDYDLLRHYVIKQFNLRKKQISRTKRVDVVEGLEKTAAE........................................ 309
29 -40.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  11  2......................................................D-KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFE--KAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTV------------RLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR---------VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI.......................................................... 209
30 -28.2005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  10  1.......................................................MTQLDFASAAYREAYSRINGVVIVGEGLANR----HFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHD-----------HDGNRAECLVIQGLIVECFAV-----AAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKA----RVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEA...................................................... 211
31 -25.4005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  13  3..................................................QLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHD----ELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAA-----------AEGKVVTCLLIQSLIIECFAI-----AAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKA----ELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFST...................................................... 218
32 -25.0004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  13  1.................................................MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAE---LLPEDKEELTRL-AKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHA------------SEGKVVTCLLIQALIIEAFAI-----AAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKE----ELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFST...................................................... 217
33 -24.2004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  14  1.................................................MPQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAE---MLPDQRDELHKL-AKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAA-----------AEGKVVTCLLIQSLIIECFAI-----AAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKA----ELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTT...................................................... 217
34 -23.9004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  13  2........................................MPTLEMPVAAVLDSSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGT---LLPDHVEELKRL-AKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTAL-----------GQGKTPTCLLIQALLIEAFAI-----SAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCRE----ELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNT...................................................... 231
35 -23.7005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  11  1.................................................MNRTAPSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAE---MLPDHAEALKKL-AAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAA-----------AEGDLTTCMVIQALIIECFAI-----AAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADT-----VLQMDKEAIVEDFMIAYGEALGDIGFSM...................................................... 218
36 -22.8002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  8  66....................RMEDWCAVSDPRYYGAYVGNRAKMQESAEFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAG--DATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSDESKAYWMDDEMWQPMRKLVEDTLV--------VDDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETN-RELLQKWIDHWEPQAYEALKPLAEASVGIDGLNEARAELSA-----RLKKFELQS...................................................... 328
37 -22.7004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  13  14................................................DSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEE----LKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTAL-----------GQGKTPTCLLIQALLIEAFAI-----SAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCRE----ELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNT...................................................... 231
38 -21.7005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  13  24..............................................SEFMPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHD----NYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAA-----------AQGQIVTCLLIQSLIIECFAI-----AAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKA----ELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNN...................................................... 243
39 -21.1005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  13  24..............................................SEFMPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEA----ANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAA-----------AAGNIVTCLLIQALIIEAFAI------AYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKD----ELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFST...................................................... 243
40 -19.4003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  8  2......................................RSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITR--APTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARE------------DIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGA------IVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQ-KQMLQDAINRFWWPALMMNSPNSARSLTWKIKRDELRQRFVDNTVPQVEMLGMT....................................................... 241
41 -19.3004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  9  14...............................................QRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITR--APTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARE------------DLYQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIV-----NQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQ-RQMLQDAINRFWWPALMMNSPNSARSMAWKISNDELRQRFVDNTVPQVEILGMT....................................................... 244
42 -19.2004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  8  2....................................................MQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVN--APTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDV------------IERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGA------LYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNRQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYN....................................................... 220
43 -18.7003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  1.......MAMHPRKDWYELTRATNWTP-LFPERMSGHMGIPLEKWESYDKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMAR--FSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQ---FDWAWRAYHSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTSQSFKEFMYEWIIGQFERSLIDLGLDKPWYWDLTTAWWNPAAGVTPEERDWLEEK---Y...................... 362
44 -18.5001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  11  1MAQKPVADALTLEL---------------EPVVEANMTRHLDT-WFAHDY--FLGGRDWDPSQSTLPRTITDACEILLILKDNLAG-HHRELVEHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDP--------------VANEDVRVQHVMKGYRAEKYTQVETLVYMAFYE----RCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAA-RAADLDVLGADIEAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLAGEPSLKQ................................................ 271
45 -18.4002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  14  1ISEFDSGETMREEQPHLATTWAARGWVEEEGIGSATLGRLVRA-WPPLEIVPFAEHPLFLAAEPHQRQRVLTYNERVIATEQLIAEPAFDLVMH-GSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISER--PPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALL--------LLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLELNAGIRGAEEIVGDLRSTAKMVEQLGL........................................................ 325
46 -17.4001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  71.......................DWNAFRDPDVYRTYNLLQDG--VQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLF--HALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEKA--IAWDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGN------REVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL........................................................ 330
47 -17.3005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  11  35.........................................GRPDFREDMIPFRGHPIWERLSDETRSRLLAYNRNTVLIEQRIANPAFELVIG-GLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRVLPDSHITTIHQEHLDRCEEPWQRS-----LTTLGFATVAEISI-----AYLDLLADDQEIVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFVAPDFTTWESI---------------------VAFEGVPG...................................................... 262
48 -16.3001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  10  1.......MSMLKREDWYDLTRTTNWTP-LFPEEMSGARGISMEAWEKYDKAALERDGFVDRADPGWVSTMQLHFGAIALEE--YAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSR----WDWAHKAIHTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQPTVWWDPAAGVSPEEREWLEEK---Y...................... 362
49 -15.9003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  9  68.......................NWDAFTDPDVYRTYNLMQDG--VQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQ--MAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPGWQGLRELMEKQ--TAFDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDN--HAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQYLERSTSLRAS--ILTV.......................................................... 327
50 -15.3001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  7  1MAISLATKAATNRAPVGVEPQEVHKWLQSFNWDFKENRTTKYHMANETK-DGLTRLGAGNKVHPRWGETMKVISNFLEVGE-YNAIAASAMLWDSATAAEQKNGYLAQ-VLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRVFADG--ISGDAVECSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPANTDLNNAFWTQQKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGGRLGKYGVESPRSLRD------AYWAHHDLALAAYAMWPLGFARLALPDEEDQAW-FEAN.... 370
51 -14.6003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  9  1MINYSERIPNNQRALEQWQPSFLNWNSSNYDVYLRTAVSVDPKGWADFGYVKMHDQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGL--TAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAF-----NEKTPDWLSFFMFTFITDRDGKFQ-----LASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEV-MKELGTDDPAKLRAAGV-------------IDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVA................ 341
52 -13.9002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  8  1MVSKNKKLNLKDK--YQYLTRDMAWEP-TYQDKKDIFPEIKITDWSPFRFDAFAQNNGHQNISDARVNALKLFISGISPLEHAAFQGYSKVGR--QFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDRVWYLSVPKSFFDDARSAGP-----FEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSEVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHH--LSHQLWTTFYQYCQATNFHTWIPEKEEMDW-MSEK.... 364
53 -13.4001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  8  1MALSTATKAATDALAANRAPTSVNAQE-DFKNNRTKYATKYKM-ANETKQDALTRLNAGVRVHPKWNETMKVVSNFLEVGE--YNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDG--ISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIG-----RLGKYGVESPRSLKD------AYWAHHDLYLLAYALWPTGFFRLALPDQEEMEW-FEAN.... 375
54 -13.2002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  9  2..QVTHSMPPQKLEIFKSLDDWARNNVLIH--------KSVEKSWQPQDYGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGA-WTRAWTAEENRHGDLLNKYLYLSGRVDM--------------RKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKI................................................................................................. 238
55 -12.8003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  5  1.............................................................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGH--APELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLL-----------EQPNGNFADTIARQYFIDAW------VALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVS-GQKMQQAINKLWRFTAELEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN....................................................... 214
56 -12.6001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  8  32MPPQKIEIFKSLDNWAEEN--------------ILVHLKPVEKCWQPQDFGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDET-AIWTRAWTAEENRHGDLLNKYLYLSGRVDM--------------RQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRK................................................................................................... 261
57 -11.7004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  8  2................................................................NNPNPVATYALRLGDNGLVLAQRLGAWCGH--APELEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTL--AFGRDERQYSNLLLVEQPNGN--------------ADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELS-NRKMQQAVDNLWRFTGELEVELSLVEQGIAVDPRELQAEWQSAVHTALLDSGLQ....................................................... 212
58 -9.5103sid_A mol:protein length:180 Symerythrin  ali model follow..  10  2..........................................................GLNYNQEDFM-TDANAASSIEVEMYECDCMYPTFAEIARRSGQPEIMFDAIAKEEGMHAQLLTKLYSELEVKDSAETL----------AKRLVSTIESQIDAVASDSRGLRRALETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE................................................................................................................... 178
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.