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Query: 4dve_A mol:protein length:198 Biotin transporter BioY, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MAMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFVDFVGAIWLSFQSNIPLLTSLISNLVFIPGDCIKAILTVVIVRRLRKQGGFELYFRLast
1 -80.9004dve_A mol:protein length:198 Biotin transporter BioY  ali model  100  1MAMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFVDFVGAIWLSFQSNIPLLTSLISNLVFIPGDCIKAILTVVIVRRLRKQGGFELYFR 190
2 -20.7004z7f_A mol:protein length:199 Folate ECF transporter  ali model follow..  16  15.MTKKKFGTKSIALMGVLIAVVVVFSRFFAYETTF--LKISFTFIPESLIGMIFGPFWAGIGTAV---------------ADVVGMLLFPKAGYFPGFTLNAFLAGAIYGYFYYKKEMTWQRVILATLLVTVLINIILTPLWLSLMYGVNLANFAW-WVPRLIKTVIFFPIQVIATYYLGNKIPFKRLFG 185
3 -19.0005d0y_A mol:protein length:184 Conserved hypothetical membrane protein  ali model follow..  18  6.KVSSKLELRELVLLAMVIAIKVVLG---QFKVGDATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSA--------------IFGNLGGFFIGFTLTAALESMIYGFFLYKKPIQIWRVIASVICVTVICYIGLNTLWVSMLGGTNFMVALSS----ILKEMITPWIHMVVVWFILEGLSRVKLSR 174
4 -18.8005d3m_C mol:protein length:184 S-component for folate  ali model follow..  20  6.KVSSKLELRELVLLAMVIAIKVILG---QFKVGNATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSV--------------IFGNLGGFFIGFTLTAALGPMIYGFFLYKQPIQIWRVIASVICVTVICNIGLNTLWVSMMYGINFMVALSS----ILKEMITPWIQMVAVWFILEGLSRVKLSR 174
5 -18.2004hzu_S mol:protein length:166 Predicted membrane protein  ali model follow..  16  2....TKGSLKENTIAAVLIAMTVALSILVVIPIPATKGIVTLCEVGIYTSAILYGRRMGLLV-------GGAS--------GFLIDILTGYPVWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFG-------WPAGLASIFGNVVQVGFGAGVTLSIVGPLTR..... 160
6 -16.2004huq_S mol:protein length:174 Uncharacterized protein  ali model follow..  10  4.TQLPKLDTLSMVTMGVLMALQLVIS---RFSVGNNFIKVSFTFLIVALIAKWFG-------------------PWWGMLTAAVVDVIGTGGPFFIGFTVSAVLGSLIYAVFLYRQPVSWWRVIGASVLIALLVNTLLNTLWVTIMYQTPFWSLLPV----ALKELIVTPVQIVLVYLLLKSQVIQMIQA 170
7 -15.2005kc0_A mol:protein length:190 Riboflavin transporter RibU  ali model follow..  13  2......SSIKKISFVGIFSALATLVMFLEFPIFPQASLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFF---------------LMKSGDPVGIAMNAVLGMSFVGI-YHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYFEAPFELYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSS..... 169
8 -15.2006fnp_A mol:protein length:182 Membrane protein  ali model follow..  15  1MQTKERYQLQRLTLLALLTAMCVVLRIFKIIDIP-----VQPVTDIIMLTTLELGAGTGILLAILVMVISNI---------------FGITLPQIFAYAACALTVALFARLLPLKSRKFFWLQELLAGFLGLEYGFFVSLGMAGWGGWAAFIAYWVSGLTFLYHAAGNLAFYPIFYLPLVLGLDR..... 171
9 -14.8003rlb_A mol:protein length:192 ThiT  ali model follow..  16  3.MSNSKFNVRLLTEIAFMAALAFIISLIPN--TVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIW------GILSMITGHAYILSLSQAFLEYLVAPVSLG-IAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLA-GILTAIAAFVILIIFVKKFPKLFIHSNY.. 184
10 -14.6004tkr_A mol:protein length:214 Thiamine transporter thia  ali model follow..  15  17.YVMQNKRLIILLECAIFAAVAMVLSFI-PLDIGSS-FSISLGMIPMYVIAIRRGFWAAGFAGLLW------GLLHFLTGKAYILMPSQAIIEYILAFSFIA-FSGVFSKQVRSNLAANQLKKAIEWAWGTMII-YVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPK..... 199
11 -14.4005kbw_A mol:protein length:181 Riboflavin transporter RibU  ali model follow..  14  2.....GSSIKKISFVGIFSALATLVMFL-EFPIFPQALKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFF---------------LMKSGDPVGIAMNAVLGMSFVGI-YHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYFEAPFELYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSS..... 170
12 -13.2003p5n_A mol:protein length:189 Riboflavin uptake protein  ali model follow..  13  5.RKLNMQQNKRLITISMLSAIAFVLTFIKFPIPFLPPLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNY---------------LFSMGDPVGPFANFLAGASFLLT-YKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMIFVIIVSGIIPF---NIIKGIVISIVFILLYRRLAN..... 184
13 -12.2004rfs_S mol:protein length:203 Substrate binding pritein S  ali model follow..  14  2....TRHKTFRLVVDALLMAIVLLQNLVPFL-IPFGPFSMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRAFTWPSSPVAPLIFTNPL---ILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAALVLGLVFLFYQTPAVATAFGATGNQTLGYVLMISLFTNIPELILDVLVAPLIAMPLRR..... 192
14 -9.8904m58_A mol:protein length:238 Cobalamin biosynthesis protein CbiM  ali model follow..  16  31..VNKSFDKKDVPAMAIGSAFAFTIMM---FNVPI-PGGTTAHAIGATLLATTLGPWAASISLTLALFIQAL---LFGD--GGILAL----GANSFNMAFIAPFVGYGIYRLMLSLKLNKVLSSAIGGYVGINAAALATAIELGLQYGLNVAIPAMMFAHLTVAGIVEAVITGLVVYYLQKV........ 212
15 -9.8005x3x_M mol:protein length:222 Cobalt transport protein CbiM  ali model follow..  16  31IRKIVAERPEARMTLAAAGAFAFVLSA---LKIPS-VTGSCSHPTGTGLGAVVFGPSVMAVLGVIVLLFQAL---LLAH--GGLTTL----GANAFSMAIVGPWVAFGVYKLAGKAGASMAVAVFLAAFLGDLATYVTTSLQLALAYPDPASGFLGAALKFIPLAIAEGFLTVIVVDALAGK........ 207
16 -9.1804m5b_A mol:protein length:217 Cobalamin biosynthesis protein CbiM  ali model follow..  16  31..VNKSFDKKDVPAMAIGSAFAFTIMM---FNVPI-PGGTTAHAIGATLLATTLGPWAASISLTLALFIQAL---LFGD--GGILAL----GANSFNMAFIAPFVGYGIYRLMLSLKLNKVLSSAIGGYVGINAAALATAIELGLQYGLNVAIPAMMFAHLTVAGIVEAVITGLVVYYLLE......... 211
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.