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Query: 4dz4_A mol:protein length:324 Agmatinase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GPGSMNETLYGDGAIRRPSVYGSSIENTYAGVLSFMRRNYTRDLDGVDVVVSGVPLDLATTFRSGARLGPSAVRAASVQLAELNPYPWGFDPFDDLAVIDYGDCWFDAHHPLSIKPAIVEHARTILQSDARMLTLGGDHYITYPLLIAHAQKYGKPLSLIHFDAHCDTWADDAPDSLNHGTMFYKAVKDGLIDPKASVQVGIRTWNDDYLGINVLDAAWVHEHGARATLERIESIVGGRPAYLTFDIDCLDPAFAPGTGTPVAGGLSSAQALAIVRGLGGVNLIGADVVEVAPAYDQSEITAIAAAHVACDLLCLWRQRKAGARLast
1 -108.0004dz4_A mol:protein length:324 Agmatinase  ali model  100  1GPGSMNETLYGDGAIRRPSVYGSSIENTYAGVLSFMRRNYTRDLDGVDVVVSGVPLDLATTFRSGARLGPSAVRAASVQLAELNPYPWGFDPFDDLAVIDYGDCWFDAHHPLSIKPAIVEHARTILQSDARMLTLGGDHYITYPLLIAHAQKYGKPLSLIHFDAHCDTWADDAPDSLNHGTMFYKAVKDGLIDPKASVQVGIRTWNDDYLGINVLDAAWVHEHGARATLERIESIVGGRPAYLTFDIDCLDPAFAPGTGTPVAGGLSSAQALAIVRGLGGVNLIGADVVEVAPAYDQSEITAIAAAHVACDLLCLWRQRKAGAR 324
2 -97.9001gq6_A mol:protein length:313 PROCLAVAMINATE AMIDINO HYDROLASE  ali model follow..  37  2..................ERIDSHVSPRYAQIPTFMRLPHDPQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRG-PGTFDLINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHG-PLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVGDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAHRTQ. 312
3 -96.6003nio_A mol:protein length:319 Guanidinobutyrase  ali model follow..  37  7..................QPLGGNEMPRFGGIATMMRLPHVAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATG-AAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHG-KVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGSRKQGFRVVQAEECWHKSLEPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR.. 319
4 -94.9003nip_A mol:protein length:326 3-guanidinopropionase  ali model follow..  37  2.............SNDHPQPLDAAEIPRFAGIPTFMRLPAFTDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSR-IAPYDLVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRE--RPLGMVHFDAHSDTNDRYGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAARSA 318
5 -91.2003lhl_A mol:protein length:287 Putative agmatinase  ali model follow..  26  2........................................SLNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLD--LEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYN-DIYVIHFDAHTDLREEYNNSKNSHATVIKRIWD--IVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIISNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKEG. 281
6 -90.6001wog_A mol:protein length:305 agmatinase  ali model follow..  26  1....................MSGPAHLPYGGIPTFARAPLVQPDGQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADV--PDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEA-LPNLVHITTVGLRGLRARARGHTIIPMDDVTADL----AGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV.... 304
7 -86.3003pzl_A mol:protein length:313 Agmatine ureohydrolase  ali model follow..  21  6.....................NGREKDHASELRSIFSLKKVNGYEEAKYVVFGIPFDNTSSYRRGSKYAPDSIRGAYVNLESYEYSYGID--LLASGMADLGDMEE-SEDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRALP----KDVDLVIVDAHSDFRSSYMGNKYNHACVTRRALD--LLGEGRITSIGIRSVSREEFKVSFISSFDVKKNGIDKYIEEVDR--KSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERL-SYKAVGFDIVEFSPLYD-NGNTSMLAAKLLQVFIASREKYYKEHI 305
8 -82.0003m1r_A mol:protein length:322 Formimidoylglutamase  ali model follow..  24  1..........SNAMDKYPFLREAGSSFKDRDVTKMSDLIATDGQDIKGPALIGVPLSKSSISHSGASFAPGTIRQALKHSSAYSAELGEH--VVSELLYDLGDIDIHVTDIVKSHHHIFQTMHALLSDHPVPLILGGDNSISYSTIKAIAQTKG-TTAVIQFDAHHDVRNTEDG-GPTNGTPFRRLLDEEIIEGQHLIQLGIREFSNKKHNVNIHTMDMIREKGLIPTIKEILPVVQDDFIFISVDMDVLDQSHAPGCPAIGPGGLYTDELLEAVKYIQQPNVAGIEIVEVDPTLDFRDMTSRAAAHVLLHALKGMKLSPFK.. 322
9 -81.2002a0m_A mol:protein length:316 ARGINASE SUPERFAMILY PROTEIN  ali model follow..  19  4..........................AARTDDPRLLSLFSAQREEDADIVIIGFPYDEGCGGRAGAKKGPAAFRFFLQRLGSVNNLELNVD-ASHLKLYDAGDITAS--TLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRAFPGDVGVINVDSHLDVRPPLQDGRVHSGTPFRQLLEESSFSGKRFVEFACQGSQCRDHQGHLMWLSEVRKKGAVAALEDAFGLTGK-NTFFSFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAKTPTVMMMDMSELNPLVE-EYRSPRVAVYMFYHFVLGFATRPKPKA 308
10 -80.7004rhm_A mol:protein length:351 Arginase  ali model follow..  22  1........................MGSSSSGLVPRGSHMF-------SKFLMNVKGVTPRGSDWANRLGPVALFGYGAGMPRRAPLLDFFDHYAELTIHDKGPIECPPETSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRLFPDDIVIVHFDAHPDVSD--------PRSPLRVLLDKGLL--KGVVSVGNRQVSSEDRKMFYMDMHAIYSKG----LFCIRDIRNDYPVFISIDADVLDPAFAPAVDSPVAGGLSTRDLLHIMNGIRGPKVVGIDVYGYNPDLDNVGLTAIALSKIIKEGILKAYSISTHTE 321
11 -78.2004rhi_A mol:protein length:351 Arginase  ali model follow..  21  1........................MGSSSSGLVPRGSHMFS---KFLMNVKGVTPRG----SDWANRLGPVALFGYGAGMPRRAPLLDDCDHYAELTIHDKGPIECPPETSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRLFPDDIVIVHFSARPSVSD--------PRSPLRVLLDKGLL--KGVVSVGNRQVSSEDRKMFYMDMHAIYSKG----LFCIRDIRNDYPVFISIDASVLDPAFAPAVDSPVAGGLSTRDLLHIMNGIRGPKVVGIDVYGYNPDLDNVGLTAIALSKIIKEGILKAYSISTHTE 321
12 -70.5001pq3_A mol:protein length:306 Arginase II, mitochondrial precursor  ali model follow..  24  2...............................................SVAVIGAPFSQG-QKRKGVEHGPAAIREAGLMKRLSSKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARHCP-DLCVVWVDAHADINTPLTTSGNLHGQPVSFLLRELCISSASIVYIGLRDVDPPEYDIQYFSMRDIDRLGIQKVMERTFDLLRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTLLSALDLVEVNPQLATSEEEAKTTANLAVDVIASSFGQTREG. 306
13 -69.5002eiv_A mol:protein length:291 Arginase  ali model follow..  28  3...............................................RVAVVGVPMDLGAN-RRGVDMGPSALRYARLLEQLED---------LGYTVEDLGDVPVSLARASRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAARG--RRVGVVWVDAHADFNTPESPSGNVHGMPLAVLSGLGAVDPKDVVLVGVRSLDPGEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRI....... 290
14 -69.3001wva_A mol:protein length:322 Arginase 1  ali model follow..  24  2..........................................SAKSRTIGIIGAPFSKG-QPRGGVEEGPTVLRKAGLLEKLKEQECDGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHP-DLGVIWVDAHTDINTPLTTSGNLHGQPVSFLLKELCISAKDIVYIGLRDVDPGELGIKYFSMTEVDRLGIGKVMEETLSYLKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGN 311
15 -69.2005ynl_A mol:protein length:362 Arginase  ali model follow..  20  18.................AKFERQHMDSPDLGTDDDDKMSPATLATPRTAGIVGCPFSGG-QPKAGVHSGPLQLIESGLLNDGWTVDFAGADALAVSIVSDTPDPDIGRLKVSRVTKDVADRVYAHASKGQLTVTLGGDHSLAMGTVSGTFKAYP-EACLIWVDAHADINTPHTTSGRLHGCPVSFLLGLDCLKPERIVYIGLRDIDAGENNIKCFSMFHVDKYGIGKVVEMALDHVRTRPIHLSFDVDALDPSVAPSTGTAVRGGLTFREGHYICEAIETNLLVSLDIMEINPSLGALASVA-QTVDVGRSLVRCALGET.... 354
16 -69.0001d3v_A mol:protein length:323 PROTEIN (ARGINASE)  ali model follow..  25  2..........................................SSKPKPIEIIGAPFSKG-QPRGGVEKGPAALRKAGLVEKLKETEYNVRD-HGDLAFVDVPNDSPNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHP-DLCVIWVDAHTDINTPLTTSGNLHGQPVAFLLKELCISAKDIVYIGLRDVDPGELGIKYFSMTEVDKLGIGKVMEETFSYLKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGN 311
17 -67.9001t5f_A mol:protein length:314 Arginase 1  ali model follow..  26  2...............................................PIEIIGAPFSKGCP-RGGVEKGPAALRKAGLVEKLKETEYNVRD-HGDLAFVDVPNDSPNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHP-DLAVIWVDAHTDINTPLTTSSGNAGQPVAFLLKELAISAKDIVYIGLRDVDPGELGIKYFSMTEVDKLGIGKVMEETFSYLKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSAFGTKREGN 306
18 -67.2001xfk_A mol:protein length:336 Formimidoylglutamase  ali model follow..  20  14................RHDPEDGQAGRRVHHIACPIQVGELAN-QEPGVALIGFECDAGVKGRTGAKHAPSLIKQALANLAWHH----------PIPIYDLGNIRCEGDELEQAQQECAQVIQQALPHA-RAIVLGGGHEIAWATFQGLAQHFLPRIGIINFDAHFDLRSELAPVRPSSGTPFNQIHHFCQQQDFHYACLGVSRASNDKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDDYLYLTIDLDVFPAASAPGVSAPAARGVSLEALAPYFDRILHYKLMIADIAEYNPSFDIDQHTARLAARLCWDIANAMAEQVQSIR 334
19 -64.0006dkt_A mol:protein length:296 Arginase  ali model follow..  27  2.............................................DKTISVIGMPMDLGQA-RRGVDMGPSAIRYAHLIERLSD---------MGYTVEDLGDIPINRNSVLAGNEKLAQKVNKVIEEKKFPLVLGGDHSIAIGTLAGTAKHYD-NLGVIWYDAHGDLNTLESPSGNIHGMPLAVSLGIGKIKPENVVIIGARSLDEGESGMKVYTMHEIDRLGMTKVIEETLDYLACDGVHLSLDLDGLDPNDAPGVGTPVVGGISYRESHLAMEMLYDAIITSAEFVEVNPILDHKNKTGKTAVELVESLLGKKL....... 295
20 -64.0001cev_A mol:protein length:299 PROTEIN (ARGINASE)  ali model follow..  27  3...............................................PISIIGVPMDLGQT-RRGVDMGPSAMRYAGVIERLEREDLGDIPIGKAERLHEQGDSRLRNKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYE-RLGVIWYDAHGDVNTAESPSGNIHGMPLAASLGFGKIKPEHVVLIGVRSLDEGEKGIKIYTMHEVDRLGMTRVMEETIAYLKEDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKL....... 298
21 -63.0004ity_A mol:protein length:330 Arginase  ali model follow..  22  3.........................................GSGMAKKMSIVLAPFSGGQP-HSGVELGPDYLLKQGLQQDMEKLGWDDGKVVEARKASDNGDRIGRVKRPRECTEKIYKCVRRVAEQGRFPLTIGGDHSIALGTVAGVLSVHP-DAGVIWVDAHADINTMSGTSGNLHGCPLSILLGLDVLKPNKIAYIGLRAVDDEELNIAAFSMHHVDRYGIDKVVSMAIEAVGTEPVMVSYDVDTIDPLYVPATGTPVRGGLSFREALFLCERIECGRLVALDVVECNPLLAATESHVNDTISVGCAIARCMMGETLLYT 317
22 -62.0004q3p_A mol:protein length:385 Arginase  ali model follow..  21  9........................VPRGSHMMLKSVATPYKPKLLYTSANFLGIPTNRG-QPKIGTYQGPELIRKSNFFQLVAEDGIQLTD-CGDIIPVELNEAEDPQRRVEELMKQSNKHTVELSGSKSTPVIVGGDHSMATGTILGHAEAKP-DLCVLWIDAHGDINTPLNSSGNMHGMPLSFLVKELCLNASNIAYIGLRDLDAHETGIAYFTMLDVDRMGIEAVIKEALLAVLEKAIHLSFDIDALDPLVAPSTGTAVPGGLTLREGLRICEEVSATKLSVVELAELNPLLGSQEKTQSSAVHILRACLGHCRSGHLPFK 359
23 -61.9004g3h_A mol:protein length:330 Arginase (RocF)  ali model follow..  16  1................................................MILVGLEAELGAS-KRGTDKGVRRLREALSATHGDVIKGMQTTQERCVLYKEFRYAKNFEDYYLFCKENLIPCMKEVFEKKEFPLILSSEHANMFGIFQAFRSVHDKKIGILYLDAHADIHTAYDSSKHIHGMPLGMVLNRVEIDPKCLVYFGVRSTEQSELQIPLFSVDAIRE-NMQEVVQKTKESLAVDIIYLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLESRLKAVEVTEYNPTVSIKHNNEKQVLEILDLIINSCKIKDKKH. 316
24 -57.5003mmr_A mol:protein length:413 Arginase  ali model follow..  18  82............................................INNNDNNNDNNNDNNNDNNNNCYIPNGVIKEKKHDLSNNKMNHNFYGNYEENNVISTNDKYKNNKEIGIFSKNLFDTMSNELRKKNFVLNIGGDHGVAFSSILSSLQMYQ-NLRVIWIDAHGDINIPESPSGNYHGMTLAHTLNLTYLKPENTAIIGIRDIDAYEKNINYYTIFDIEKNGIYNTICTALEKISNCPIHISLDIDSVDNVFAPGTGTVAKGGLNYREINLLMKILETKRVVSMDLVEYNPSLDEVDKKVHGDSLPILDNATKTGK...... 392
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.