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Query: 4fhc_A mol:protein length:368 Spore photoproduct lyase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPMSDYDIPTTENLYFQGAMGKPFVPKLVYFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRGIPGETELARYRNAKSTLVVGVRRTLKFDSSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINSRYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQELARQLEGMDLSDLTFELIQHRFTKPAKRVIEQRYPKTRLDLDETKRKYKWGRYGIGKYVYRDEEAKELEDTMRRYIEQFFPGAYVQYFTLast
1 -125.0004fhc_A mol:protein length:368 Spore photoproduct lyase  ali model  100  1MKPMSDYDIPTTENLYFQGAMGKPFVPKLVYFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRGIPGETELARYRNAKSTLVVGVRRTLKFDSSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINSRYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQELARQLEGMDLSDLTFELIQHRFTKPAKRVIEQRYPKTRLDLDETKRKYKWGRYGIGKYVYRDEEAKELEDTMRRYIEQFFPGAYVQYFT 362
2 -17.0004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  11  7......................................................................................................LIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNKIYNSLQTNGTLIESWAKFLSENKFLVGLSMDGPKEIRKDCCGLDTFSKVERAAELFKKYKVEFNILC--VV-----TSNTARHVNKVYKYFKEKDFKFLQF.......................................................................... 191
3 -16.2005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  10  18.............................VVDVNSGAVHVVDDISFDILDYYKNFTAGEIKNKLAHKYNADEIDEALREIESLEAEGKEYVSSMDRKSVVKALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEVKKAIDFLISESGNRKNLEIDFFGGE--PMMNFDVVKGIIEYARQKEKEHNNFRFTLTTNGLLLDENIKYINENMQNIVLSIDGNDRMRIRIDGSGCYDDILPKFKYVAESRNQDNYYVRGTF-----TRENMDFSNDVLHLAD................................................................................... 275
4 -15.5004r33_A mol:protein length:420 NosL  ali model follow..  12  1MGSSSSGLVPRGSHMTQNSQAMGDFVLPELEDVRAEAATVDTRAVLALAEGE--EPAESRAAVALALWEDRSIGTAELQAAAEARCGARRPRLH---------PLYTTNYCDSECKMCSMRK--GNHRLDRKFSGRKEITEQLEILYHHEGVRGVGFLTGEYEDKHTRLASAFRIGWAIRTALDLGFERVYFNIGSMEQDEIDVLGE-VTMCVFQESYDRETYRRFMGKTADFDRRVVSFDRWLDAGYR-YVNPGVLV---GLHDDLSAELVSLVAHGDHLRSRGATADLSVPRMRP................................................................. 301
5 -15.3004rtb_A mol:protein length:477 HydG protein  ali model follow..  9  1MGSSSSGLVPRGSHMTQEIITLVQRTYEIVNKVNRNPKEEI-SQIIQKL--QKGERLSLIEAGIAFANDTEELDQILFWQARKVKEEIYGKRIV---------PLYLSNICINNCSYCSFRRENKELSRVRL--SLEEAVDEA-KAIREMGHTRILLVMGEEPEDKTLSYLEEIIPAIYS---EVDIRRINVNIAPLTLKGYERLKKLKTYQLFQESYNPEVYREVHLDGPNFLWRLNAVERAIEAGI-DDIGIGALFGLGDPLFELLGVIAHADYLKKKFGIGPHTVSVPRLKPALN................................................................ 286
6 -14.8006b4c_A mol:protein length:298 Viperin  ali model follow..  10  14.......................................................................................................NYHFSRKCNKECLFCFHTATTSHVEKP-------ENAKRGLTLLKQAGMKKINFAGG--------EPFLKFLGEMIDFCKETLQLEVSIVTNGSLVKEQFLQKHGRNLAVSCDSFNEATNIKIGRGSGDNVQKLEIGSWCQKYDIKFKLNT--VVNKFNHLEDMNDHLNAL........................................................................................ 174
7 -14.7005l7j_A mol:protein length:459 ELP3 family  ali model follow..  10  16.......................................................................................................VMTKPLPCPGKCIYCPTFAATPQSAVLRAKSCEYQAYKQVALRLRIPTDKVELIIMGGTFLSADITYQYGFIKDCYDALNGVVAGSLCIETRPDICGQRMIDFGTTRVELGVQMLDDDIYKLVERG--RVSDVAEATCLLREYGLKVHYHWMPGLPGSS-PEKDLALSRMVFEDPR--CPDGLKLYPTMVVEGTILEQWWKE......................................................... 247
8 -14.7005fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  11  1.............................MWSHPQFEKASTGREILEKLERREFTREVLKE---LSINDRGFNEALFKLADEIRRKYVGDEVHIRA-------IIEFSNVCRKNCLYC---GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPY-XMPDVISDIVKEIKKMGVA---VTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRP-DTSFENRLNCLLTLKELGYETGAGS--MVGLPGQTIDDLVDDLLFLKEHDFDMV............................................................................... 235
9 -14.6004wcx_A mol:protein length:480 Biotin and thiamin synthesis associated  ali model follow..  11  1MG-----SSSQDPMVKEKADFINDEKIRQDLEKAKKATSKDALEIIEKA--KNLKGITPEEAAVLLNVEDEDLLNEMFKVARYIKEEIYGNRIV---------PLYVSNYCVNNCRYC---GYRHSNEQQRKKLTMEEVRREV-EILEEMGHKRLAVEAGEDPVNCPIDYIVDVIKTIYDTKLKNGIRRVNVNIAATTVENYKKLKKVGTYVLFQETYHRPTYEYMHPQGPDYDYHLTAMDRAMEAGI-DDVGLGVLYGLYDYKYETVAMLYHANHLEEKFGVGPHTISVPRLRPALN................................................................ 285
10 -14.3004jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  12  1.............................MWSHPQFEKASTGREILEKLERREFTREVLKE---LSINDRGFNEALFKLADEIRRKYVGDEVHIRA-------IIEFSNVCRKNCLYC---GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYY-----MPDVISDIVKEIKKMVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRP-DTSFENRLNCLLTLKELGYETGAGS--MVGLPG--QTIDDLVDDLL....................................................................................... 225
11 -14.1003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  12  3..................................QKMALDEFDSLGDKV--IEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVF---------FIYFSTYCKNQCSFCYYNCRNEINRYR---LTMEEIKETC-KTLKGAGFHMVDLTMGEDPYY---YEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGFLALYQETYDTELYRKLRV-GQSFDGRVNARRFAKQQGYCVEDGI--LTGVGNDIESTILSLRGMST...................................................................................... 228
12 -14.0005v1q_A mol:protein length:459 Radical SAM  ali model follow..  10  32.............................ILINKTNFEDETEAFFLYLVQNHGIEIATSFFKKEIEMGKLERALSLNIYSDNNIRKHVAKLKKHNILSFPLELVIYPSMYCDLKCGFCFLANREDRNAKPA------KDWERILRQAKDNGVLSVSILGG---EPTRYFDIDNLLIACEEL-----KIKTTITTNAQLIKKSTILAKSKYITPVLSLQTLDSKLNFELMGVRPDRQIKLAKYFNEVGKKCRINAV--------TKQSYEQIIELVDFCIENKIDRFSV.......................................................................... 289
13 -13.9005l7l_A mol:protein length:446 ELP3 family, ELP3 family  ali model follow..  9  16.......................................................................................................VMTKPLPCPGKCIYCPTFAATPQSAVLRAKSCEYQAYKQVALRLRIPTDKVELIIMGGTFLSADITYQYGFIKDCYDALAQHRCVGLCIETRPDICGQRMIDFGTTRVELGVQMLDDDIYKLVERG--RVSDVAEATCLLREYGLKVHYHWMPGLPGSS-PEKDLALSRMVFEDPR--CPDGLKLYPTMVVEGTILEQWWKE......................................................... 247
14 -13.5005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model follow..  11  34........................................................................................................YHFTRQCNYKCGFCFHTAKTSFV------LPLEEA-KRGLLLLKQAGLEKINFSGGE------LQDRGEYLGKLVRFCKEELALSVSIVSNGSLIERWFKDYGEYLDILAISCDSDEQVNALIGRGQGKKNHVENLQKLRRRDYKVAFKINSVINRFNVDEDMNEHIKAL........................................................................................ 197
15 -13.4006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  8  1...............................MGSSSSG--IPEEIYKILRKQRYQIDGHTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQ----------CTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPK-VLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIF-----HKNGFTTFVVSNGILTDVIEKIEPT-QLYISLDAYDLDSYRRICGGKKEYWESINTLDILKEKKRTCIRTT--LI------RGYNDDILKFVELYERADVHFIELK......................................................................... 264
16 -12.9003c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  13  26...........................................................................................................FQGCLMRCLYCHNRDTWDTHG----EVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRAC-----KKEGIHTCLDTYDPVIDELLEVTD----LVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRY-VVVPGWSDDDDSAHRLGEFTRDMGN.................................................................................. 192
17 -12.9002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  8  17.....................................NPNMPKEVAELFRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFYGIHSHRCLQ---------MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEF-----HKRGFTTFIVTNGTIPERLEEMIKEDQLYVSITAPDIETYNSVNIPMIPWERILRFLELMRDLPTRTVVRLT-LVKGENMHS-----PEKYAKLILKARPMFVEAKAYSHQDIREFAEALVKHLPGYHIEDEY.............................................. 315
18 -12.7004u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  10  55.......................................................................................................TFLLLGPCTRACAFCQVEKGHAPA-----AVDPEEPTKIAAAVATLGLRYVVLTSVARDD-----DQGAGQFVATMAAIRQRCPGTEIEVLSPDFRMDRGRLSQRDCIAQIVAAQPACYNHNLETRGATYESSLRVLATVKELNPDIPTKSGLMLGLGETEAEIIETLKDLRR...................................................................................... 229
19 -12.6001r30_A mol:protein length:369 Biotin synthase  ali model follow..  13  70..............................................................................................................CPEDCKYCPQSSRYKTGLEAERLMEVEQVLESA-RKAKAAGSTRFCMGAAWKNPH---ERDMPYLEQMVQGVKAM-GLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGG--IVGLGETVKDRAGLLLQLAN...................................................................................... 228
20 -12.1006c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model follow..  8  25.......................................................................................................LAELTHRCPLRCPYCSNPLELDRRSAELDTQTWLRVLTE----AAGLGVLHVHLSGG---EPTARPDIVEITAKCAEL-----GLYSNLITSGVGGAL-LYDVGLDHVQLSVQGVDAANAEKIGGLKNAQPQKMQFAARVTELGLPLTLNS--VIHRGNIHE-----VPGFIDLAVKLGAKRLEVAHT....................................................................... 197
21 -12.1002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model follow..  13  31VEELKKYIPLTKEEEEGVAQCVKSLRMAI-LIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLL---------------------ITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAID----YIRNTPQVRDVLLSG--GDALLVSD--ETLEYIIAKLREIPHVIVRIGSRTPVVPELVNMLKKYHPVW--------LNTHFNHPNEITEESTRACQLLADAGVPLG---SVLLRGVN---DCVHVMKELVNKLVKIRVRPYYI.......................................................................... 289
22 -11.6001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  11  14....................................................................................................RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNEL-DEMARIAKVYAELGVKKIRITGG---EPLMRRDLDVLIAKLNQIDGIED---IGLTTNGLLLKKHGQKLYDARINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNV--IQKGINDDQ-----IIPMLEYFKDKHIEIRFIEFMDVGTKDEMLTMIEQHFE...................................................... 225
23 -11.1005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  7  4..................................................................SSSGLVPRGSHMAKGIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDYSCSWCDSAFTWDGSAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGG---NPALLKQLDAFIELL-----KENNIRAALETQGTVYQDWFTLID---LTISPKPPSSKMVTNFQ-------KLDHILTSLQENDRQHAVSLKVVIFNDEDLEFAKTVHKRY........................................................................................ 194
24 -10.8005exi_A mol:protein length:331 Lipoyl synthase  ali model follow..  8  87.......................................................................................................TFLIGGDCTRRCDFCQIDTGKPAELDRDEPRRVADSVRTM--------GLRYATVTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNGTRLAEVFESGPEVLAHNVETVPRIFKRIRPAFTYRRSLGVLTAARDAGLVT------ILGLGETSDEVRTALGDLRD...................................................................................... 252
25 -10.1006fd2_B mol:protein length:457 Putative apramycin biosynthetic oxidoreductase 4  ali model follow..  11  74VEPICHVSLPSLLEDAERLATFRAQGARCYAYWRTLFERGGCEGVLLPESISFARAA-LAGDHTVPGLVTPDSLLDPRHHQPAFGDLAAEPLPARDLVDHTPYSINGSFGCPYPCRFYCPYPLSEGRKI---TYPVERIVAEF-RQCAELGITAAVF----RDPVFSFHR--DRTLELCQALKAADGVPWWCETRIDRLDEVVAALVDAGVEVGVESGDPDMQATAVRKRLNLDTVRKFHAVARKAGLKLVFLF-----LIGLPRETRMSIRRTFDFILELGLADTEFNL-----------SVITPYPGTELHQIAVDKGWIDGSQNAFTSHNAVMHTDELSIGDLERASRFVDELHAVCK. 436
26 -9.7504njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  8  42...........................................................................................................FAGCNLWSGREEDRAQAVCRFCDTDFKDADALVATIAGLWPAGEAHRFVVCTG--------EPMLQLDQPLVDALHA-AGFGIAIETNGSLVLESIDW-----ICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLV---QPMDGPSRDLNTKLAIDWCKRHPQWRLS.............................................................................. 214
27 -9.7403rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N  ali model follow..  10  38......................KPFRADQVMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWARVETVYIPEDDRAT----------LCVSSQVGCALECKFCSFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGE--PLLNLNNVVPAMEIMLD---GLSKRRVTLST-SGVVPALDKLGDMIDVALAISLHAPAAVRRYLEKSNANQGRVEHAHQLAEKDTPCKINLIPWFPGAPYGRSSNSRIDRFSKVLMSYGFT.............................................................................. 340
28 -9.1004jc0_A mol:protein length:438 Ribosomal protein S12 methylthiotransferase RimO  ali model follow..  10  69.........................QYGYKLVVKGCLVQRYYEELKKEIPEVDQ-WIGVADPEEIANAIENGTDLVPDQPETVYRYRKRIDLEERPYA-----YVKISDGCDRGCTFCSIPSFKGSLRS-----SIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDFDVPVQHGSDKILKLMGRTKSS-EELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKF............................. 376
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.