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Query: 4fp9_B mol:protein length:335 mTERF domain-containing protein 2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SNGGVIEELSCVRSNNYVQEPECRRNLVQCLLEKQGTPVVQGSLELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKSEYLQYSLTKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDDEEELast
1 -90.5004fp9_B mol:protein length:335 mTERF domain-containing protein 2  ali model  100  1SNGGVIEELSCVRSNNYVQEPECRRNLVQCLLEKQGTPVVQGSLELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKSEYLQYSLTKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDDEEE 335
2 -51.3003m66_A mol:protein length:270 mTERF domain-containing protein 1, mitochondrial  ali model follow..  17  3.......VDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNY----ISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL............................................................. 270
3 -38.4003n6s_A mol:protein length:353 Transcription termination factor, mitochondrial  ali model follow..  14  50.......TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSADFVRKIIFKNPFILIQSTKRVKANIEFLLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIEPRVLDSSISTLKSRIKELVNAGCNLST-----------LNITLLSWSKKRYEAKLKKLSRFA..................................................................... 347
4 -38.2003mvb_O mol:protein length:343 Transcription termination factor, mitochondrial  ali model follow..  14  49.......TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILEASPESFNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLPADFVRKIIFKNPAILIQSTKRVKANIEFLLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIEPRVLDSSISTLKSRIKELVNAGCNLST-----------LNITLLSWSKKRYEAKLKKLS........................................................................ 343
5 -36.5004yxx_A mol:protein length:220 dTor_6x35L  ali model follow..  14  3........................LEQALKILKVAAELGTTVEEAVKRALKLKTKLGVSLEQALKILEVAAELGEEAVKRALKLKTKLGVSLEQALKILEVAAKLGTTVEEAVKRALKLKTKLGVSLEQALKILKVAAELGTTVEEAVKRALK-LKTKLGVSLEQALKILEVAAELGTTVEEAVKRALKLK-TKLGVSLEQALKAKLGTTVEEAVKRALKLKTKLGGWLE......................................................................................................... 214
6 -9.6306cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model follow..  24  103....................................................................................................................................................................................................................................................DGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEED 221
7 -9.3406eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model follow..  27  167........................................................................................................................................................................................................................................................................................DENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEED 221
8 -8.6305chl_A mol:protein length:74 Vacuolar protein sorting-associated protein 72 homolog  ali model follow..  19  12...............................................................................................................................................................................................................................................................................NKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPE. 74
9 -8.0603cx5_F mol:protein length:146 Cytochrome b-c1 complex subunit 6  ali model follow..  23  4........................................................................................................................................................................................................................................................................ELVGEYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE.. 72
10 -7.4004ui9_D mol:protein length:121 ANAPHASE-PROMOTING COMPLEX SUBUNIT 15  ali model follow..  23  25..........................................................................................................................................................................................................................................................VEETELQQQEQQHQAWLQSIAEKDNNLVPIGKPASEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEMNDYNESPDDGEVNEVD. 108
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.