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Query: 4h40_A mol:protein length:327 putative cell adhesion protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GAAGSPEEDMEDRVRIDPVAGGYYPSISPSAQTRGATPDGETLKDRPIFLLEDGSTIRLVVYDDAKNLLEEYSKAYLVRNAGTSGSSLLYPCEVDDNGAVISSSSTPLYMKAGTYYFRILSPAKALNSKGFVNIGNGEYLLATDDRYTQTAMTAVTITKIDEGGTLNNVQTLYLPPIINQTARMQFTVRAGEGVHTLEMLAEGIEISGIQQPLDNTTSFDWVNGDVLPVKVGDQSASVRITQATRNADNSLVAHTGVLPTDARSHSISVLLNLKVNGNPTQYQMLLTGLYLTAGHSYNYTATVKISNGVTVLTWQNRSWTENVVMDKLast
1 -99.0004h40_A mol:protein length:327 putative cell adhesion protein  ali model  100  1GAAGSPEEDMEDRVRIDPVAGGYYPSISPSAQTRGATPDGETLKDRPIFLLEDGSTIRLVVYDDAKNLLEEYSKAYLVRNAGTSGSSLLYPCEVDDNGAVISSSSTPLYMKAGTYYFRILSPAKALNSKGFVNIGNGEYLLATDDRYTQTAMTAVTITKIDEGGTLNNVQTLYLPPIINQTARMQFTVRAGEGVHTLEMLAEGIEISGIQQPLDNTTSFDWVNGDVLPVKVGDQSASVRITQATRNADNSLVAHTGVLPTDARSHSISVLLNLKVNGNPTQYQMLLTGLYLTAGHSYNYTATVKISNGVTVLTWQNRSWTENVVMDK 327
2 -55.9003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  9  1.GSDDREDGRWKASALRVPLQVSSAVIKQEVVTRLAPDP----------VPLTEGAIGIFLSGTEPESGQED---------SGYKVIDNRKYVYSEGHWGPPTANDTIYLVGNDADVCAYYPYKDSYTDKT-----------VIPLQSQDYVETEDIYYALNTM-INGFTPAITFDMVHAYSLVELKISRENYFMPCEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDA-SPHTLSVGESYVCRVLMIPVPLKIERTGLSVSLVIDGQQMLVEIPYSELEFRQGEKYVIGLKIKGTE--IVPTVKALEWEDEEVNG. 301
3 -52.0003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  14  1...GDEESGKADRAYKPIEIYGNINVVNNVQETRAVGAA-----------WGSDDRIGVTVEADEDNATAN-----------AVDTYINIQYRNETGGSFGSTDNNIRLKGEGEFTLNAYYPYQGANGTLPGTEGV-IAKTISGADQTTDKQPQIDFLFAQATG--VRAESPVTFDFSHKMTKIILKFKATNGAT---LNNMKVYLKSLQLEGSFNVTTGEAVAKSGATPNSELSMD-----IAKPAEGEMTASIILFPQDMPE---KVLLEVRMNDE--TYTQYMPVQNLESGHAYPYNVTFENPA-MTITKAEIEDWIVEDDKD. 290
4 -50.9004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  13  1...GGENTPQPTDGRVALEA-----TSGIRMNTRAYDKT-----------WEAGDAIGIYMLNGDATDGNGNR--------------KYTTAQTAENGSFTAAEGQTIYFDASQRDFVAYYPYRETLADGN---------VYTVDVSVQTPQKDIDLMGAAKVEGKDKTDPKVAFVFTHKLVKLDITIKADGTLTDADLAGTTVSISNQQTAATYNVVTGGDATVTTGTTKE-----------IVLHTDGLKAEGIVLPAASTAGMALTFTVPGLEGQAFHWDVNSQSKAFVAGSKYLYTITISKAG--VEVSSKVEDWTPGNGGG. 276
5 -49.6003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  8  10.............................EKTLAVVSASSDDRPSTRGIINDNTYALGVFRTTANTYAPLYN-------------------VKHIYSGGEWGADDV-IKVDYRNASFFAYYPYHTATGNYAGLAGGTTLTLQAQLFNAGEDICYGAGEASGGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIKSNNANFYLTRSLDIASTAGATGGSAVAAGYVHNPN----VNIATGKSVTYEYMFPPQPLDGSKLTILVTV--DGVTRSCDISTLGSSLDSGKYYGVSLTFTDVG-IILSSAVVTVNNFGGQGN. 284
6 -46.0004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  9  2...EMTEMNPDTNRTIGL-------DVYTEVQTRGTETTTST--------LKANAGFGIFAYQTSSAGWNSE--------KGNTTPNFMYNEHATWTSDSWGYTNLRFWPIDDKITFFAYAPYESKPEVGSGQNAKGAPTITFEVKTSNNWKDMIDLVTDCHTQTNESNKGTVQFKFSHVLTQIANIKVKPDVNTDTKIFVTGLKLDTLYNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDFSDTEALYFIPVNNKNGTLKLKINYDIVTKVTNKEVSLPKNTFKKGTKHTYVLTIKMNAIKITVEDNMEGWTDDSDSD. 354
7 -44.2004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  9  1....GDELQETSKEATNFSISIDDAL--SDPLTRTSNDLFPARNSITTGEVIS----------------------------MAASGQDYTPFIVGKDSRAW----NEIGTATGTVTFYAHYPALTDE------------AATRSGGNKRYLKGGQEHLFGTA--EAAPGSQNVSLKFKRMTVPVIILDENDRPYE-----GEAKVELSLKNEGTQDLLNGTIEINENALSE-----------NIEVKKVSEGVTTNVLPQKINAGEEIGTITV--GGVTQKISAV-EDLDLKAGSTLSVRLSKKFGG--GIIDGNVPLYR....... 247
8 -24.5004eps_A mol:protein length:510 hypothetical protein  ali model follow..  11  1....GEEEVPGNVRNGIVLNVTDTGIISNEPSTRTEDTGFVTT-------FTQGDQIGLFAVKDGAILDEINNMPFT-------------------NGSSWSGKPILYDDRLVGVNFYAYYPYQSEMTGKTDLIGDDAGWELTTEQSDQKAYAKQDLMTSNATALIENGNYSLSFQLTHRMSLVVVKLPSTRYIFTDA-------------EGVAMPEETPYVAMSVDVAFYLDNVEEGTKISPYYDAKKDEYRLLRKPSSENQ------IIGHYNDKQCTLDTA---EKMKEGKYKRFVVD......................... 258
9 -23.6004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  12  1.GNDEVENLGNNVPGEQAVLTIKLKGDGDNAQSRAAGPATDTEDAV--------NNYLVFLFREGGALDCAPY-------------------------GSSNAAATITTGTTAAKKAYVVANTGALAGGLFATVKTETDLMDNTDNASTQTKTNLWMSGESEVKFNGGTNAQVTVSLSFVAAKIQLIVKDNRKNMTITITDDAAVLLFAGKKGRFGFNQYTGAFDSGVTTSTALSDAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVGGTSYPILFTNTDIEPGKSYTVTVTLNGDVAAIEVTVTAAQWVTQPVDKE 346
10 -22.9005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  7  18QGAMRGVDPQPDPLQPDVYLLVNARAAHTNGEESINMDAEDFEDRV--------HSLAMLVFDSNTGE-------------------KVAEHFSSSIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQVFRDLDPIHYHNAT-TITQPLPFKPDGENNVKLQRVVAKLDVNIVEG------VENLQKIELCNANVHYRLVPNQSEPIQFYGPVELRREAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQYLPFPSYTVYRNRHYIYRIKTLPDK--IEVKYSICDWNIVTN... 345
11 -20.0004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  9  1GERIYED-LAPCPHGVSLRFIYDYNMEYANAFAKKVD------------------CLTLLVYDENGN--------------------YVDTRIVTGTELQDENYRMKLDLKQGNYHFVAYGGLACNKSSFLMKYTPGEGTGYTDCLTNPRRKNLHGLYWGELTLATADLYSEGTVEMMKNTNNIRVVLQ---QMNGEPVDDKKFEFEITDDNILFSYDNNLLENGMVTYTPWAQGQASAGFTDEGREVVVAYAELSTS-MVRDWYSPKLTVRRKADGVEI-INIPLINEFLDRESEWSMIFFLSPNLEWIKTYIKINDWTVRINDIR 309
12 -19.9004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  8  1.GKDEDPVLPLEGAKLSVAVKASGTATKAYNPNDVNELEGEAY-----------NNLAVVVFNETGTEL------------------LGYKWEALSGAEHSAIIADVPTTKAVRARIIVLANVPRDLLSTVSTYDEFQTRLVDLSSQSQTNSEEDNYLGYTDLGDQNVDGISDPILLTRVAARIDLVNISTRPFAGREVRIDAVGIYNMKTKSYFSEADWGETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVKATLRGNTKIFTAVIDHNFIRRNYVYRLRIYFDGESFDNIIAVQVVGWGPVMQHPV 353
13 -19.7003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  9  1.....................GDVAYELPAHTTRAQLSIDLVNNGDVEQQ----NSMRFIVFGSTPGGVRLDVNEHILLSTPETATDIDAQLLEVTSS--------------NDILVVVIANEPQSLTSQLDGIANLLTLISSILNSDGQIISATGMPMTGVIRDISDETKTVQMVIERAVARVDVFIEAIDGGAVTTAGSTSVTLHNFSHDSYFKVKEDVSESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAESDYSDRLSISMANVLKGPSDVTGITGPFTEIRRNNVYQVTARVGKIGIQIL-TISVEDWGERQDID. 342
14 -18.8003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  12  2ASCD-NEDLPECRLSVKFKYDYNMEFADAFHAQ---------------------DKVELYVFDKNGK--------------------YLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHD-----------NSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLM-EDRKTRLVLTEKASGKR-VFDINLIDYLAMTNRQSNYHIIFFLSESWLAVQIVVNGWVHIQEENQ 296
15 -17.0005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  8  13......................................................TNLYLLLFDQSGANPAKYYIAGNTFSGGIWLPDDMKVKLDMTQ------------SEAGERKVYVVANVDNAVKTALDAVAN-QTVKRTTAMPWSTDIASPFLMSGNKTHDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVSLSEFKFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDWTVWTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPEFLPDKILRNHWYKYEVEI........................ 282
16 -16.7004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  8  13........................DFTKTGEAVRYERNQGSAAERL--------TNLYLLLFDQSGANPAKYYITGNTFTGGTWLPDDMKVKLDMTQ------------SEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTAMPWSTDIALMSGNKTHDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVSLSEFKFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDWTVWTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPEFLPDKILRNHWYKYEVEI........................ 305
17 -15.6003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  6  1.GDDNEIEIPKAPVLEKAQLALAIKSEEGAVTKTGETTPTDAD-----------NTLTVGVFGVDGWSVIYT--------------------KDATPNSDGTKDVGPQEVYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINLSDETLTKGLTMSSKVLDSGKEVYGAGPVPLVRDVASIALAGADIGNYESKSFVLKEVFIASAKGVSSVASTEEWGTIEKDFFGDTHNTKGEVKSGESNVNEAYANHTLLIV-ESITKENCYYAIPVGEEVTIDG-TEKRSKFYVQRNYKYEISLTIIGPGS-VSASVKVEPWNVKTIHEE 400
18 -14.9004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  11  1....GKDNEAEPVVETNATVSFIIK----SGESRAVGDDLTDAK----------TKLTAMVYAGQVQEGIKT-----VEEDGGVLKVEGIPCKSGANRVLVVVAN-----HNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAAFTIKPGSNHYYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNNYYSFKPADAKIAALVAKKDSKIDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKDYPVLVNYDGNGYIYSGAITQGQNKIVRNNHYKISLNITGPGANLNVTCQVTPWVVVNQAAT 368
19 -14.9004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  9  1GACSNDEEMATGGVDGREAYMSVSVAMPKSTGTRALGEHHGTADEQNV------KEVLLALFDASDVCLETKT-------------ATTDYILNVGGANKAGYDGKAFKVPSATAKVLAVVNPSDKFKTACVASASWSAINGAVEQTLDEVTGTSKMMINAATAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVPATCTFGDWALNITNKSMNYLKVADDGTLPADFSAMADSKYCLENTMAADAQTQAQTTSAVATPGSFTVGESWFRLL-EYSKPDAAAGETVGVEYFQKGVCYWYTLTINSKEAYLSVEITVNPWTTWSQGVD 507
20 -13.1005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  8  4TGCSRRDILDDYPVSG------------------DIKLDWDGVTD------QLPEGVRVIFYPKNGDGRKVD--------------------------KYLSVRGGEMKVPPGRYSVVVYNRIRGEESYETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKSEEVLRLDWKLESVVKKYSFAVEAK---GLEYVATVVGSIDGL--SDCYCIGKGRGVCSSQP-----------IYFEVKKGDNKVTAFFTAFKQVKEMTMPTRMSTSERETSSEKGAIILIKFIKTDNTVQEATIDVTEPDGGGGMGGNVDGWGPEDNVE. 314
21 -12.3003pay_A mol:protein length:314 putative adhesin  ali model follow..  10  1GSCD-REDLPRCELWLEFVFDYNMEYADAFNPQ---------------------KSVDVLVFDSD---------------------DKLLFTKSVKVAALVGGNRMSL-LDFGSYKVLTVGSLSDRFRLSDNAGNKQQVIVSLKRETGGVNFEFQHLYFGEVVLPSNTNHKIYPVNLIRDTNRFNLALM---GYEENKVDGTQYTFEIQAPENAVYSWENEPTGQGPPGEISDVVMSARLNTMRLLNRSGWDYKFIIRDANTEAEVWSYNLMTLLSIARPVSRYDGTELPLDRQSEWNLVFTVVEKNGFLQIGIVVGTWIHWLHGME 313
22 -11.0003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  9  2.......EVPIGFDTDELSFDMSLVLLTGDMQTKASDPNYTYATTEELT-----QNCHVAVFDKDGKRIYFKNFYSKDLGEMKTIGN-------LSGYELQLEGVRTFGKEDKKVSVLVVANANNANNSPFDNLTTYDGVSYTAKTIAKGPVTASLLVKIGKSEKYNQDNAPVTVSLIQLSAKIEYTGVYKNGELLEGFSLTKVAGLNASSKITI................................................................................................................ 205
23 -10.1005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  10  31...........................................................................................YAFDKDGILRSANVFE--EKDGLYTIFAWGIGETTKQQVLMRLKQDGKWATNIDG-TTLWYATSPVVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPENYE-----IKLASSNGSYRFD------------GTVAKADSTYYPGETKVVGDSTCRAFFTTLKLE-SGHENTLSVTHKPTGRE-IFRTDLQNINLRCINDFDIRLVAHPDDTYVVVQIWINGWL....... 277
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.