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Query: 4iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSGSTEEQRFDQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFWWPALMMFGPNDDNSPNSARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPDLQFDEASGHYRFGEIDWQEFNEVISGRGICNHERLAAKRKAWEEGEWVREAALAHAQKQQARSAALast
1 -115.0004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model  100  1MGSSGSTEEQRFDQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFWWPALMMFGPNDDNSPNSARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPDLQFDEASGHYRFGEIDWQEFNEVISGRGICNHERLAAKRKAWEEGEWVREAALAHAQKQQARSAA 314
2 -99.9003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  91  1...MRSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHAQKQHARKVA 311
3 -73.2004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  15  2..............................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCGDELAFGRDERQYSNLLLVEQPNGNFADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELSNRKMQQAVDNLWRFTGELFLADEVELSLVEQGIA-----VDPRELQAEWQSAVHTALLDSGLQIPQEAAF-RSGGKQGLHSE------------HLGPLLAEMQYLQRSHPGLQW.................. 251
4 -72.3003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  16  1...........................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDELAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIA-----LSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAY-RTGGKKGLHTE------------HLGPMLAEMQYLQRVLPGQQW.................. 253
5 -64.4004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  18  1.................GMQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNY-----QNKNRMQGAINFWFPRAVEMLHMTWSLNE--THLRDLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDKALHYNVVL........................................................ 234
6 -55.3003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  15  74WGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELQKYLNFHYSVTSDLYGAE--ISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGR........ 412
7 -47.1005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  1.....................MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIP--ADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAELVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHF---DQVKARVSAVVVEALPLTLAMLQSLAAD---------MRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAAR........................................................ 224
8 -45.0004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  12  1.GMPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLE---SCREELLEANRENLPLIRRMLDQVAGD---------AAVLQMDKEDLIEDFLIAYQESLTEIGFNTREIT................................................................. 235
9 -44.1004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  12  8......................LELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDE--LHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKA---ELEEANRQNLPLVWLMLNEVADD---------ARELGMERESLVEDFMIAYGEALENIGFTTREIM................................................................. 221
10 -43.4004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  8......................TEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEE--LTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKE---ELEQANKENLPLVWKMLNQVQGD---------AKVLGMEKEALVEDFMISYGEALSNIGFSTREIM................................................................. 221
11 -43.2005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  11  9......................KELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDE--LIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFA---ESKAELELANRQNLPIVWKMLNQVEGD---------AHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIM................................................................. 222
12 -43.0004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  11  1.GMPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCRE---ELLEANRENLPLIRRMADQVAGD---------AAVLQMDKEDLIEDFLIAYQESLTEIGFNTREIT................................................................. 235
13 -42.9005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  12  9......................AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEA--LKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVRE---GIERANAQNLPIVWRMLNAVEAD---------TEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVM................................................................. 222
14 -39.1005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  12  34......................PTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLA--DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFE---ESKAELEAANRQNLPIIWKLLNAVADD---------ARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIM................................................................. 247
15 -38.2005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  10  37.........................DYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEE--LASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGD------------ALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAG........................................................... 253
16 -37.5001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  9  63ARMEAAKDERQFGTLLDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRVFASVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIAN-DPASAKFLNTDLNNAFWTQQKYFTPLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKRDAYWAHHD--AYAMWPLGFARLALPDEEDQAWFEANYPGKIFWKKLGYEDPKSGFIPYQW 402
17 -35.8002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  11  89.....AKMQESAETSFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDEDDEMWQPMRKLVEDVVDDWFETLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNRELLQKWIDHWEPQAYEALKPLAE--------------ASVGIDGLNEARAELSARLKKFELQSRGVSA................................................................ 333
18 -33.6005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  8  3......................KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVEELFPLAVQIV--------------KEGKDKIEPLGY---SIQELVNLMEELKKARINKI......................................................................... 209
19 -32.5003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  61...IQREKDAGAYSVKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAIAAKHFFDDIITGRDALTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIE--NGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLE---SQSFKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELHHSY------TAWWNPAAGVTPEERDWLEEKYPGRCWITENVLNDRMDLVSPET. 392
20 -32.0004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  11  44.............ADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAEFRQIYKKAGLFPLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRT...................................................................... 294
21 -31.6001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  10  68ARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIAN-DPASAKYLNTDLNNAFWTQQKYFTPLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLYALWPTGFFRLALPDQEEMEWFEANYPG--WWRARGCEDPSSGFI.... 403
22 -30.4003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  12  38.............ADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALWHKICVERAILPMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRL------IEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNA-----------------------------------RGRPVAEIDVDYSPAQLEDTFADEDRRTLAAASA. 317
23 -30.2001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  61...IQREKDSGAYSIKAALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIHTNARSFFDDMTRDSVASIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVE--NGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLE-SRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHL----TVWWDPAAGVSPEEREWLEEKYPG--WNDDVITDNLVNGKPELTV 389
24 -30.0002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  10  64...YQAEKEKKLYAIFDAFAQNNGHQNIDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDDDARSAGPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSWSEA--EVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHHLSH------QLWTTFYQYCQATNFHTWIPEK--EEMDWMSEKYPDTFDK....... 371
25 -26.8001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  91.....DGQESYVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALE-KEGNREVLQKWVAKWEPLADKAIEAYCS---------------PDGENAIVEAKSASRYVRQMMGL....................................................................... 330
26 -26.2003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  8  88.....DGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPGWQGLRELMEFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALE-NPDNHAVIEGWIEKWRPLADRAAEA................................................................................................................ 299
27 -24.6002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  9  65.............EEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERNIPAVKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE--EVVQNIVKEAVEVERSFI----------CESLPCDLIGMNSRLMSQYIEFVADRLLECLGSP...................................................................... 297
28 -24.5002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  7  65.............EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKRMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE--ERVREIIVDAVKIEQEFL----------TEALPVGLIGMNCILMKQYIEFVADRLLVELGFS...................................................................... 298
29 -24.3002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  8  48.............EEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVEFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVH--KPSEERVREIIINAVRIEQEFL----------TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS...................................................................... 281
30 -24.3002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  56.............FEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLK--NPTPKTFLESIVYDVILEGL-AFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELTEETKTFVKTTLMKAADL------EKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGME...................................................................... 299
31 -24.1003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  8  41.............EAVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE--ERVREIIINAVRIEQEFL----------TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS...................................................................... 274
32 -23.3003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  7  67.............EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKRMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE--ERVREIIVDAVKIEQEFL----------TEALPVGLIGMNCILMKQYIEFVADRLLVELGFS...................................................................... 300
33 -23.0001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  7  60.............EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSALQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNP--KIIEKIITEAVEIEKEYY----------SNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNE...................................................................... 292
34 -23.0004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  66.....LPTEIPMGKDIEL-----KSDRLSEDERRVILLNLGFFSTAESLVGNNIVLIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKD-EGLQEFVKNLVGYYIIMEGI-VMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEITPELQQEIVELIKRAVDL------EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLK---------------TKNPFPWMSETIDLNKEKNFFETRVIEYQHA-ASLTW.................. 360
35 -22.8003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  14  1.GMSTSPADT-------------------ARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQAAVDYFHSRTR---ADWYESLMKAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASDE-TTEVLRERLRSALADDPRLASRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSAGLAEKHSKRMTQLGLTG..................................................................... 225
36 -22.8001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  9  106.............EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVH--KPAEQRVREIITNAVRIEQEFL----------TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN...................................................................... 339
37 -22.8006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  9  45.....VHTEVDFTADTQ-----DFHAHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRVDYLQDNRKYMVSLILFSILIENVSLFSQFAIFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYDEETLALVRETVKDSIAV-----ESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIP...................................................................... 289
38 -22.7002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  9  66.............EEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNPAIKNKALWAAKWINDTNSFAERIVANACVEGI-CAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE--NVVQNIVKEAVEVERSFI----------CESLPCDLIGMNSRLMSQYIEFVADRLLECLGCS...................................................................... 298
39 -22.5004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  9  29.............EEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEK-EVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEQQEVQKETQELLMELY------EIEMAYTEEIYTSIG---LVEDVNRFVRYNANKGLMNLGLE...................................................................... 271
40 -22.1001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  9  11TLELEPVVEANMTRHLDTEDIWFAHDYVPSTLPRTITDACEILLILKDNLAGHHRELVEHILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANED--VRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPLAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADAGIFG---------KPQLRQLISDRITAWGLA...................................................................... 264
41 -21.9002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  13  64.....DTLVPDYPLEIVPFAEHPLFLAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMHSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRK--ELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARDAQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQ---RRALVRCLPIALEAFAEQDLSALLLAEEIVGDLRSTAGGTRLVRDFSGARKMVEQLGL....................................................................... 325
42 -21.7001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  11  39.............EKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEISEENRNLQRKAEIVLQSYRGDEPLKRKVASTLLESFLFYPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVRAELKDYTYELLFELYDN------EVEYTQDLYDEVG---LTEDVKKFLRYNANKALMNLGYE...................................................................... 273
43 -21.6001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  9  44.............EKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAILLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQISEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAQEEYKAYTFDLMYDLY------ENEIEYTEDIYDDLG---WTEDVKRFLRYNANKALNNLGYE...................................................................... 278
44 -21.4003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  10  34.............EKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESFLFYSMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGREELKSFAFDLLLELYDN------ELQYTDELYAETP---WADDVKAFLCYNANKALMNLGYE...................................................................... 268
45 -21.3004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  33.............TRIPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDLRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEITNTNPYLQKKAEIINEIYLNGTALEKKIASVFLETFLFYPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDQEKLKEWMYDLLYTLYEN------EEGYTESLYDTVG---WTEEVKTFLRYNANKALMNLGQD...................................................................... 267
46 -21.2001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  10  123.....TAEEIDLSKDIH-----DWNNRMNENERFFISRVLAFFAASDGIVNENLVEFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP--AIVEKIVTEAVEIEQRYF----------LDALPVALLGMNADLMNQYVEFVADRLLVAFGNK...................................................................... 359
47 -21.0006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  9  60.............EKIPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIVINTETLQERAKALIPYYVNDDPLKSKVAAALMPGFLLYPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEQAEMKEFVFKLLYELIDL------EKAYLKELYEDFG---LADDAIRFSVYNAGKFLQNLGYD...................................................................... 294
48 -20.9005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  9  33.....DPGRPDFREDMIPFRGHPIWERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRVLPDSHITTIHQEHLDRCEETLGFATVAEISINAYLDLLADDQQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADR---RRFLLEKVVAGLEAFVAPDFTGVPGWEKAAAEVREAQGGTHLVQDHSGIHTLLTEMDV....................................................................... 295
49 -20.5001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  12  34.............EKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMAAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIREELKLFALDLLMELY------DNEIRYTEALYAETG---WVNDVKAFLCYNANKALMNLGYE...................................................................... 268
50 -20.3006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  9  64.............ENIPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIVVDNEALQARPKALIPFYTADDPLKSKIAAALMPGF-YLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEQAEMKQFVFDLLDKMIGL------EKTYLHQLYDGFG---LADEAIRFSLYNAGKFLQNLGYE...................................................................... 298
51 -20.2001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  7  51.............EEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
52 -20.0001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  7  51.............EEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRA-RELKKKLYLCLMSVNALEAIRFYSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
53 -19.5001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  7  51.............EEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRA-RELKKKLYLCLMSVNALEAIRFYSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
54 -19.3004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  48.............EEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKAELREFAIDLLNQLYEN------ELEYTEDLYDQVG---LSHDVKKFIRYNANKALMNLGFD...................................................................... 289
55 -19.3001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  6  51.............EEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRA-RELKKKLYLCLMSVNALEAIRACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
56 -17.8001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  12  1...........................MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRADE-EIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGTLEQMIESAIAGETYEWTQMY-----------GFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT........................................................................................................................................ 144
57 -17.7002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  11  3VTHSMPPQKLEIFKSLDDEKSWQPQDYLPDPVSDDYFVVLVGDMITEEALPTYMSMLNRCAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENS--YLGFIYTSFQERATFISHANTAKYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYS---ALDYCDILEFLVDKWNVE------RLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTM--PFSWIRQVK............. 337
58 -16.9001mhy_B mol:protein length:395 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  7  117.....SEEARYTQRFLAAYSSEGSIRTIDPYRDEILNKYFGALLYSEYGLFNAHSSVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKATVQEIWQGVQDWNELWAGHAVYDATFGQFARLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSENRTFLNAWTEHYLASSVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVD.................................................................... 381
59 -16.6005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  12  138......HTEFNFTSDIQ-----DFKTGLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEFKELKKKPVIMKRVHYLDDDREYTESILLFALFIEHVLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWDEEHNNLIKEMCLNSFEA-----ESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLE...................................................................... 381
60 -16.6002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  12  23................................IKKLVDKLVKATAAEFTTYYYYRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVTYGKDPRTYDLAQRILQEEIEHEAWFLELLYGR............................................................................................................................................ 170
61 -16.5001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  13  1...........................MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFNG-EIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTSEIKDLTLKEVLDIAISVEKDSIILYYELKDLVNSDAQKTVKKIIDQEKEHLRKLLEMKRES............................................................................................................................................ 150
62 -16.4004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  11  17............................ANPRFAQLLLEQFGGATGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSSQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDETKQTLVHLLTREISHTQMFMKALDSLGKLTD....................................................................................................................................... 182
63 -16.2001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  9  79....................QVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENS--YLGFIYTSFQERATFISHGNTARHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTA---KDYADILEFLVGRWKVD------KLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTM--PFSWIRQVK............. 362
64 -15.5002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  11  20..................................SLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE........................................................................................................................................ 165
65 -14.9002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  12  5.............................SHDVKELIEGLNEDLAGEYSAIIMYAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQAE------------DVREMLEYARQSEYETIKRYEKRKEQAANELVVKLEDMIADETNHMEELDRLLNDK............................................................................................................................................ 144
66 -14.6004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  11  3.........................GSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKADV-DIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFGTSRQNLQSAIAGET--------------YTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGLVD.......................................................................................................................................... 144
67 -14.5001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  10  2.........................AGNREDRKAKVIEVLNKARAMELHAIHQYHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDAD--QEDATIEAYSQ-----FLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDT...................................................................................................................................... 152
68 -14.3001fyz_C mol:protein length:389 METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN  ali model follow..  7  114.....AEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKALAVEGLWQEVFDWNEAFSVHAVYDALFGQFVRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPENRTVMRNWTGKWLEPTIAAL------RDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRID.................................................................... 372
69 -14.3003sid_A mol:protein length:180 Symerythrin  ali model follow..  13  1...........MGLNYNQEDFMGLDRFFQDAVSNNTDANAASSIEVEMYECDCFAEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQIDAVSRGLRRALETALEVETIESQKTKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLEVA........................................................................................................................................ 180
70 -14.1003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  13  1...........................MGMQGDPDVLRLLNEQLTSELTAINQYSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLA--IEYDVLNRLKP-----GIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM............................................................................................................................................ 143
71 -13.7003dde_A mol:protein length:239 TENA/THI-4 protein, Domain of Unknown Function with a Heme Oxygenase-like Fold  ali model follow..  11  1.GMSEQKVATMWDSILTNSPFIHEVLD-GKATKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYFCFHHAHEEAGHELMALSDIASIGFDREDVLSSKPLPATETLIAY-SATGNPVQRLGYSYWAENVYGYIDPVLKAIQ-PQSMKFFIAHSKIDAKHAEEVNEMLHEVCK-TQEDVDSVVAVMENSLVLTARILD................................................................................................................. 215
72 -13.6005n5e_e mol:protein length:99 PFC_05175  ali model follow..  13  18................................KEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNL............................................................................................................................................................................................................................... 76
73 -13.5003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  9  2..............................QGDAKVIEYLNAALRSELTAVSQYYRLQEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLA--AEHDARTLYIE-----ARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLM............................................................................................................................................ 141
74 -13.5005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  7  2..............................KGDKTVIQFLNKQLTNELTAINQYARMLNHWGFDKLGKHEYEESIGEMKHADRLIARIFMLDGLPNLQDLHKLLIGEDVPELLACDLK--LEQAAHATVRE-----AIAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIDLI............................................................................................................................................ 141
75 -13.4002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  8  4.................................YTLAEFLAHAIALETEAAERYVELADMMEAHDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPVKRLGADFAAEEAEHVVALDKWIEKTPRPSI....................................................................................................................................... 154
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.