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Query: 4iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLAFGRDERQYSNLLLVEQPNGNFADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELSNRKMQQAVDNLWRFTGELFLADEVELSLVEQGIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQGLHSEHLGPLLAEMQYLQRSHPGLQWLast
1 -112.0004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model  100  1MNNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLAFGRDERQYSNLLLVEQPNGNFADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELSNRKMQQAVDNLWRFTGELFLADEVELSLVEQGIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQGLHSEHLGPLLAEMQYLQRSHPGLQW 251
2 -103.0003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  73  4.SGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHTEHLGPMLAEMQYLQRVLPGQQW 253
3 -73.2004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  15  31.AYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED--LYQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFWWPALMMFGPNDDNSPNSARSMAHSNDELRQRFVDNTVPQVEILGMTVPDPDLQDEASGHYRFGERGICNHERLAAKRKAWEEGEW 296
4 -71.7003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  14  28.AYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED--IYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTE--SGHYRFGEIDWQEFNEVINGR..... 273
5 -60.6004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  15  14.DLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVI--ERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNY-----QNKNRMQGAINFWFPRAVEMLHMTWSLNETHLRDLNLTKNDLINGYIKTTNEELKKCGYNEVNYDKALNVVLK.......................... 235
6 -50.1003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  12  104.EYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELQKYLNFHYSVTSDLYGAEISSNAYYTNGLKRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQ........... 369
7 -39.8005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  15  10.AYREAYSRINGVVIVGEGLANRHFQMLARRIP--ADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLAR--RLFQPLHDLFKRHDHDGNRAELVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHF---DQVKARVSAVVVEALPLTLAMLQSLAADMRQ----IGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAARMVGS..................... 228
8 -39.7004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  16.SYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELH--KLAKMEQRHMKGFMACGKNLSVTPDMGFA--QKFFERLHENFKAAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANF---DASKAELEEANRQNLPLVWLMLNEVADDARE----LGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAA......................... 230
9 -38.3004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  11  30.RYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELK--RLAKMEMRHKKGFTACGKNLGVEADMDFA--REFFAPLRDNFQTALGQGKTPTLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANL---ESCREELLEANRENLPLIRRMLDQVAGDAAV----LQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAA............................ 241
10 -38.3004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  12  16.IYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELT--RLAKMENRHKKGFQACGNNLQVNPDMPYA--QEFFAGLHGNFQHAFSEGKVVTLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANF---ATAKEELEQANKENLPLVWKMLNQVQGDAKV----LGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAG......................... 230
11 -37.6005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  13  17.TYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELI--RLSKMESRHKKGFEACGRNLAVTPDLQFA--KEFFSGLHQNFQTAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHF---AESKAELELANRQNLPIVWKMLNQVEGDAHT----MAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIG......................... 231
12 -37.3004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  10  30.RYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELK--RLAKMEMRHKKGFTACGKNLGVKA-DMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANL---ESCREELLEANRENLPLIRRMADQVAGDAAV----LQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAA............................ 241
13 -37.0005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  13  17.TYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALK--KLAAMENRHFKGFQSCARNLEVTPDDPFAR--AYFEQLDGNFQQAAAEGDLTTMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVRE---GIERANAQNLPIVWRMLNAVEADTEV----LQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLAS......................... 231
14 -36.0005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  14  42.TYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELA--SLAKMEARHKKGFTACGKNLNVTPDMDFA--KKFFSDLHGNFQVAAAAGNIVTLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANF---ESAKDELERANRENLAIVWRMLDEVAGDALV----LGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAAA...................... 259
15 -35.3005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  13  42.TYKDAYSRINAIVIEGEQEAHDNYLTLAELLA--DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAK--QFFSELHKNFQTAAAQGQIVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHF---EESKAELEAANRQNLPIIWKLLNAVADDARV----LGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA......................... 256
16 -31.2002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  10  114.ETQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGDESKAYWMDDEMWQPMRKLVEDTLVVDDWFEILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNRELLQKWIDHWEPQAYEALKPLAE---------ASVGIDGLNEARAELSARLKKFELQSRG.................................... 330
17 -30.6001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  10  93.RWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRKGMKRVFADGFISGDAVELVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIAND-PASAKFLNTDLNNAFWTQQKYFTPEYGSKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKRDAYWAHHDLALAAYEDQAWFEANYPG--W 374
18 -26.8003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  12  88.GWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRA--IAAKHFFDDIITGRDAISFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIE--NGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELHHSYHMGVWEERDWLEEKYPG--W 365
19 -26.1001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  12  98.KWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRKGMKRVFSDGFISGDAVELVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIAND-PASAKYLNTDLNNAFWTQQKYFTPEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLLAYEEMEWFEANYPG--W 379
20 -26.0002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  11  92.RYVNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFHDGPHMHDRVWYLSVPKSFFDRSAGPFEFLTAISFSFELLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLSL-DYMLPNKVMSWSEAWEVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHHLSHQLWTTFYEEMDWMSEKYPD--T 368
21 -25.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  7  11.EIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLVEDFQSSRWREN-FHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVEELFPLAVQIVKEGKDKI------------EPLGYSIQELVNLMEELKKARINKI.......................................... 209
22 -24.4001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  12  88.GWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIHTNEWAAIAARSFFDD-LTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVE--NGKKDEAQQMVDVAIWRSWKLFSV-MDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWEEREWLEEKYPG--W 365
23 -23.1003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  11  11.RYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQAAVDYFHS----RTRPADWYESLMKAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASDE-TTEVLRERLRSALADDPRLASRLRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSGLIAGLSKRMTQLGLTG...................................... 225
24 -22.4004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  9  61.EEKISALPLVAGFSAGEEAVTLDILPMAHALARQEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVIFYEALPEAMNRLYADDSPEAVINMIVEGTLAESGYYTFRQIYKKAGLFPLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQTYALEIDYDLLRHYVIKQFNLRKKQISRT....................................... 294
25 -21.1003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  5  55.DERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELPECLNA-YNHIVEGMLALTGYYAWHKICVERAILPMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEE--FALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNA....................................... 283
26 -20.8001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  13  116.EWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDQGFRELIEKALIAWDWGELVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEK-EGNREVLQKWVAKWEPLADKAIEA---------CSALPDGENAIVEAKSASRYVRQMMGL........................................ 330
27 -20.5003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  12  113.GWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHEREQGLRELMEKQLTAFDWGELVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALEN-PDNHAVIEGWIEKWRPLADRAAEA---LSMLSSDILPAQYLERSTSLRASILTV.............................................. 327
28 -18.5004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  87.DERRVILLNLGFFSTAESLVGNNIVLAIFKVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEITPELQQEIVELIKRAVDL-EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNP---SETIDLNKEKNFFETRVIEYQHAASLTW 360
29 -18.1001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  10  60.TLPRTITDACEILLILKDNLAGHHRELVEHFILEDWWGRWLGRTAEEHLHAIALREYLVVTREVDPVAN----EDVRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPLAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETAAIAARAADLDVLGADIEAYRDKLQNVADAGI-------KPQLRQLISDRITAWGLA....................................... 264
30 -17.7002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  9  82.DEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE--ERVREIIVDAVKIEQEFL-----TEALPVGLIGMNCILMKQYIEFVADRLLVELGFS....................................... 298
31 -17.7002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  10  82.NEKHFIKHVLAFFAASDGIVLENLASKFLRVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHA-KNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE--EVVQNIVKEAVEVERSFI-----CESLPCDLIGMNSRLMSQYIEFVADRLLECLGSP....................................... 297
32 -17.5006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  8  65.AEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRVDYLS-QDNRKYMVSLILFSILIENVSLFSQFAILKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYDEETLALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIP....................................... 289
33 -17.3003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  8  58.EERYFISHVLAFFAASDGIVNENLVERFSQVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE--ERVREIIINAVRIEQEFL-----TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS....................................... 274
34 -17.1002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  6  73.TEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELKTFVKTTLMKAADLEKDWF-----RYIIGDKIPGINPEDMETYISFIANKRAVQLGME....................................... 299
35 -17.0002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  9  65.EERYFISHVLAFFAASDGIVNENLVERFSQVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDAAVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHK--PSEERVREIIINAVRIEQEFL-----TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS....................................... 281
36 -16.3002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  11  96...TGMWIGYNERVIATEQLIAEPAFDLVMHSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISERPPQPELVTYRRLRRVLADMPE-IAVLVWGAVAETCINALLALLARDAQPMHSLITTLHLRDETAHGSIVVEVVRELYARNEQQRRALVRCLPIALLLELNAAGIRGAEEIVGDLRSTAGGTRLVRDF-SGARKMVEQLGL........................................ 325
37 -15.8004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  11  46.EEQIAYKRVLGGLTLLDTKQGGEGMPLVLVLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPYRRLLKPEVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEQQEVQKETQELLMELYE----IEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLE....................................... 271
38 -15.6001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  10  56.GEKQLTMRVFTGLTMLDTIQGTVGAVSLIPALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAWSEENRNLQRKAEIVLQSYRG-ASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVRAELKDYTYELLFELYDN----EVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYE....................................... 273
39 -15.5003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  10  51.VEQQLTMRVFTGLTLLDTLQNVIGAPSLMPALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAWSEENAPLQRKAQIIQQHYRG-ASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGREELKSFAFDLLLELYDN----ELQYTDELYAETPWADDVKAFLCYNANKALMNLGYE....................................... 268
40 -15.5003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  8  84.DEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNVKKKADWALRWIADRKSTFGERVVAFAAVEGVFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE--ERVREIIVDAVKIEQEFL-----TEALPVGLIGMNCILMKQYIEFVADRLLVELGFS....................................... 300
41 -15.4001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  7  61.QEQLATMRVFTGLTLLDTIQGTVGAISLLPAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAQEEYKAYTFDLMYDLYE----NEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYE....................................... 278
42 -15.3004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  50.KEKDLVGKVFGGLTLLDTLQSESGVDALRKVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIWTNTNPYLQKKAEIINEIYLN-ASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDQEKLKEWMYDLLYTLYEN----EEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQD....................................... 267
43 -15.1006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  9  77.EWQELITRTFTGLTLLDTIQATVGDVAQVPSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEAINTETLQERAKALIPYYVNDDPLKSKVAAALMPGFLYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEQAEMKEFVFKLLYELIDL----EKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYD....................................... 294
44 -15.1001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  7  123.DERHFISHVLAFFAASDGIVNENLVERFSQVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNVKKKADWALRWIGDKEATYGERVVAFAAVEGIFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVH--KPAEQRVREIITNAVRIEQEFL-----TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN....................................... 339
45 -15.1001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  8  68.HEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIENALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD....................................... 322
46 -14.9002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  9  83.NEKHFIKHVLAFFAASDGIVLENLASKFLRVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKW-ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENQNIVKEAVEVERSFICESLPCDLI---------GMNSRLMSQYIEFVADRLLECLGCS....................................... 298
47 -14.9001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  9  51.AEQQLTIRVFTGLTLLDTIQNIAGAPSLMAAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAWSEENPPLQRKAQIILAHYVS-ASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIREELKLFALDLLMELYD----NEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYE....................................... 268
48 -14.9001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  8  77.DQKTYIGNLLALSISSDNLVNKYLIENFSALQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLEIANLPEVKHKAAFIERWISN-AFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNP--KIIEKIITEAVEIEKEYY-----SNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNE....................................... 292
49 -14.7001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  8  143.NERFFISRVLAFFAASDGIVNENLVENFSTVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP--AIVEKIVTEAVEIEQRYF-----LDALPVALLGMNADLMNQYVEFVADRLLVAFGNK....................................... 359
50 -14.4001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  8  68.HEKHIFISNLKYQTLLESIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIENALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD....................................... 322
51 -14.4001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  13  6...GTKTAENLKQGFIGESMANRRYLYFAKRADE-EIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGTLEQMIESAIAGET--------------WTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT.................................................................................................... 144
52 -14.4001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  9  68.HEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIENALEAIRYYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD....................................... 322
53 -14.3005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  12  65...SWGWVAYNRNTVLIEQRIANPAFELVIGGGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRVLPDSHIEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADDQQVVNSTTVKLHNRDEYCHASISGEMMKQVYEAPADRRRFLLEKVVAGWESIVAFEGVPGWEKAAAEVREAQGGTHLVQDH-SGIHTLLTEMDVDQVEFGWGTTVTR........................... 309
54 -14.3006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  10  81.DWQQLITRTFTGLTLLDTVQSSIGDVAQIKSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAWVVDNEALQARPKALIPFYTA-AAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEQAEMKQFVFDLLDKMIGL----EKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYE....................................... 298
55 -14.0001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  8  68.HEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIENALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD....................................... 322
56 -14.0003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  11  1MQGDAKVIEYLNAALRSELTAVSQYWLHYRLQEDWGFG-KSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLAAEHDARTLYIEAR---------DHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMGSIGEQNYGMLN............................................................................................ 153
57 -13.9001mhy_B mol:protein length:395 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  8  145...DEILNKYFGALLYSEYGLFNAHSSVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTVQEIWQGVQDWNELWAGHAVYDATFGQFARLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSENRTFLNAWTEHYLASSVAALKDAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVD-------------VDQKVDAVLAGYKN.......... 395
58 -13.9004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  11  1MKGDQKVIEYLNRGLRSELTAVSQYWLHYRMLEDWGYK-KWRAESIEEMAHADKFVERILFLEGLPNLQTLDPLRIGQTVKEVLESDLAAEREARALYQEGA---------AYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVSKLGLELYAQHH............................................................................................ 153
59 -13.7005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  12  1MKGDKTVIQFLNKQLTNELTAINQYFLHARMLNHWGFD-HEYEESIGEMKHADRLIARIFMLDGLPNLQDLHKLLIGEDVPELLACDLKLEQAAHATVREAI---------AHCESVRDYVSRDLFQDILDDTEEHIDYLETQIDLI........................................................................................................ 141
60 -13.6004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  12  23.....QLLLEQFGGATGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFAVRGMGPHFLDSQGDVVRDLRANIAAEAGARQTYEELIKSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKLTDP.................................................................................................. 183
61 -13.6001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  10  1MKGDAKVIEFLNAALRSELTAISQYWVHFRLQEDWGLA-KSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRIGEGPRETLECDLAGEHDALKLYREAR---------DYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLYDRLGPQGFALLN............................................................................................ 153
62 -13.6001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  12  1MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLK-VEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAI---------GYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQ............................................................................................ 153
63 -13.5005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  10  1MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLK-HEYHESIDEMKHADKLIERILFLEGAPNLQDLGKLLIGANTQEMLQCDLNLELKATKDLREAI---------VHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSH............................................................................................ 153
64 -13.5003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  9  1MQGDPDVLKLLNEQLTSELTAINQYFLHSKMQDNWGFT-HTRAESFEEMRHAETITDRILLLDGLPNYQRLFSLRVGQTLREQFEADLAIEYEVLERLKPGI---------VLCREKQDATSARLLEQILADEETHIDYLETQLQLMDKLGDA.................................................................................................. 147
65 -13.4004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  13  2MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLK-VEYRESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAI---------GYADSVRDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQ............................................................................................ 154
66 -13.3003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  13  1MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLK-VEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAI---------GYADSVHDYVSRDMMIEILRDERGHIDWLRTELDLIQKMGLQNYLQAQ............................................................................................ 153
67 -13.3005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  11  1MQGDPEVIEFLNEQLTAELTAINQYFLHAKLQDHKGWT-YTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFHVRVGQSVTEMFQADREVELEAIDRLRRGI---------EVMRAKHDITSANVFEAILADEEHHIDYLETQLDLI........................................................................................................ 141
68 -13.3003sid_A mol:protein length:180 Symerythrin  ali model follow..  12  21VSHNNTDANAASSIEVEMYECDCMYPTFAEIARR-EIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQI--ASDSRGLRRALETALEVETIESQKTKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLEVA.................................................................................................... 180
69 -13.3003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  10  1MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLK-HEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQCDLNLELKATKDLREAI---------VHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSH............................................................................................ 153
70 -13.2002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  7  18...DFSLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELE-KVQDIIDLIRWAMKAEEIAAEFYLKLEEVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE.................................................................................................... 165
71 -13.1001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  7  89.EIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGATRAWTAEENRHGDLLNKYLYLSGR---VDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVAKDYADILEFLVGRWKVD----KLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRSW 355
72 -13.1004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  10  1MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLK-HEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAI---------VHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSH............................................................................................ 153
73 -13.1002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  8  64.EIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGATRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVALDYCDILEFLVDKWNVE--SDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTMSW 330
74 -13.1003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  9  3MQGDPDVLRLLNEQLTSELTAINQYFLHSKMQDNWGFT-HTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGI---------VMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................................................ 143
75 -13.1001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  9  1MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLE-HEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAI---------AYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQ............................................................................................ 153
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.