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Query: 4iyp_A mol:protein length:222 Immunoglobulin-binding protein 1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSMAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLDLFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVESGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRLast
1 -95.7004iyp_A mol:protein length:222 Immunoglobulin-binding protein 1  ali model  100  1GSMAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLDLFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVESGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSR 222
2 -83.2003qc1_A mol:protein length:243 Immunoglobulin-binding protein 1  ali model follow..  82  13SHMAAEDELLLPRLPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNNLVAMASQRQAKIERYKQKKEVEHRLSALKSAVESGQADDERVREYHLLHLRRWIAVSLEELESIDQEIKILKEKD............ 237
3 -73.4002v0p_A mol:protein length:234 TYPE 2A PHOSPHATASE-ASSOCIATED PROTEIN 42  ali model follow..  23  2...........ASVTEQFNDIISLYSTKEHTSLRQDSPEYQGLLLSTIKKLNLKTAIFDRLALFSTNETIDDVSTASIKFLAVDYYLGLLISRRQRQSMKLIYLKKSVESFINFLTLLQDYKLLDPLVGEKLGNDLSGAQLKRKEKIELFQRNKEISTKLHCLELELKNNDEHDELLRELYLMRLHHFSLDTINNIEQNLFECEMLSNFLK........... 234
4 -6.7302oku_A mol:protein length:131 Acyl-CoA dehydrogenase family protein  ali model follow..  13  18.......................IREEYQQTEVKPELQPMKEALARMTDRAEALIAFVTE----QKDQELLDFQARRLVEMTAHAVFGHLLMLAANDDDSFRQSAEV................................................................................................................... 97
5 -6.3102pb1_A mol:protein length:400 Hypothetical protein XOG1  ali model follow..  2GGHNVAWDYDNNVIRGV---TPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIP-----IGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI................ 224
6 -6.3105b04_I mol:protein length:678 Probable translation initiation factor eIF-2B subunit epsilon  ali model follow..  11  476.SESSETSSSSEEDMEFIPFSARRDSANTINSEDFDEGDFNKEAQQSLERAFEENHQIDIAALMAMNANYHEVRSAIVLALLMTRWGPLLAKLTFSHEEQVDNVLTLQKYFLQLLGYFYQLEIAEENAIQEWYSDPRSSEGELAALR-----DAGGKQFVDWLNTAESESESEEGSE............................................. 678
7 -6.1405eur_A mol:protein length:136 Uncharacterized protein  ali model follow..  10  9...........................................................DIALSADKETVQELSTKYFTEIVVTTMLNSTGSDMANSNRILNDIHAAGLDAGDYGKYSRWWAQSNAQERQEAERRRKEAKAHQERMAAIHATPEEIAKAVAERKAREEALIKRFGNKGA........................................... 132
8 -6.1305x41_Q mol:protein length:256 Uncharacterized protein CbiQ  ali model follow..  12  102........................................PDGPAKAAALVMRATAATCCLLFLATTTPAADL-LSGLRRWRVPAELIEIAL-LAEEAAAMTTAQRARLGHATRRRWLRSTAQV---------AALLPRALTRARRLETGLGARNWQGEMRVLSTR........................................................ 225
9 -5.9105n9j_B mol:protein length:144 Mediator of RNA polymerase II transcription subunit 10  ali model follow..  13  1..MLPQDDMTASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK.......................................................................................................... 120
10 -5.6003b0b_B mol:protein length:107 Centromere protein S  ali model follow..  17  1GSEAAGGEQRELLIQRLRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEIRQCENFARDLEMFARHAKRSTITSEDVKLLA............................................................................................................................................ 84

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.