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Query: 4jrf_A mol:protein length:508 putative cell adhesion protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GACSNDEEMATGGQNQLPVDGREAYMSVSVAMPKSTGTRALGEHHGTADEQNVKEVLLALFDASDVCLETKTLATTDYILNVGGANKAGYDGKAFKVPSATAKVLAVVNPSDKFKTACVASASWSAINGAVEQTLDEVTGTSKNNFMMINAGDNANPTNGALVTANVKVVDGTTIPDVATAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVPAGVTCTFGDWALNITNKSMFPYSEIVMPAGGSTGADYRIDPNYELAGFDVSQFNYLKVADDGTLPADFSAMADSKYCLENTMAADAQTQAQTTSAVASAVYTPGSFTVGESWFRLLGVTYKTLADLQVVYNAAKAAGTADAAQTQVITLCDQFYARIAKAATAQGKAVGADFASITITELDDLKSGGEYSKPDAAAGETVGVEYFQKGVCYYNILIHHDDAITATMAHGKYGVVRNNWYTLTINSVKQPGTPWLPDTTNPTDPKDPGEDDDDKEAYLSVEITVNPWTTWSQGVDLLast
1 -153.0004jrf_A mol:protein length:508 putative cell adhesion protein  ali model  100  1GACSNDEEMATGGQNQLPVDGREAYMSVSVAMPKSTGTRALGEHHGTADEQNVKEVLLALFDASDVCLETKTLATTDYILNVGGANKAGYDGKAFKVPSATAKVLAVVNPSDKFKTACVASASWSAINGAVEQTLDEVTGTSKNNFMMINAGDNANPTNGALVTANVKVVDGTTIPDVATAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVPAGVTCTFGDWALNITNKSMFPYSEIVMPAGGSTGADYRIDPNYELAGFDVSQFNYLKVADDGTLPADFSAMADSKYCLENTMAADAQTQAQTTSAVASAVYTPGSFTVGESWFRLLGVTYKTLADLQVVYNAAKAAGTADAAQTQVITLCDQFYARIAKAATAQGKAVGADFASITITELDDLKSGGEYSKPDAAAGETVGVEYFQKGVCYYNILIHHDDAITATMAHGKYGVVRNNWYTLTINSVKQPGTPWLPDTTNPTDPKDPGEDDDDKEAYLSVEITVNPWTTWSQGVDL 508
2 -103.0005nf3_A mol:protein length:523 Minor fimbrium subunit Mfa1  ali model follow..  15  1....................AAKSYMSMTLSMPMGSARAGDHYVGEWAGKDKIEKVSIYMVPQGGPGLVESAEDLDFGTATHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGKAKALLANVNAADFDAKFKEIIELSTQTTDETIMMTCL--------------QPSDALTIEAAVSEANAIAGIKNQAKVTVERSVARAMVSTKAQSAAGSVLATITDIRWVVAQGERRQYLSKKRGTVPENTWVAGLWEDHNTNEAVISGTQVPTLADYQLQDVTGELANALSGKFLLPNTHKSGANAAGNTAYVLVRAKFTPKKEAFIDRGKTYSD--------------------------------------------NTAVPEYVAGEDFFVGENGQFYVSMKSVTDPKVGGVAGMKAHKYVKGKVLYYAWLNPSTTSPD--SWWNSPVVRNNIYHIHIKSIKKLGFNWNPLVPDPDVPTDPENPLPDQDTFMSVEVTVLPW......... 523
3 -100.0005nf2_A mol:protein length:501 Minor fimbrium subunit Mfa1  ali model follow..  15  1............................................PGEAGKDKIEKVSIYMVPQGGPGLVESAEDLDFGTATHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGKAKALLANVNAADFDAKFKEIIAKKNGTTDETIMMTCLQPSDA-------------LTIEEAAVSEANAIAGIKNQAKVTVERSVARAMVSTKAQIAAGSVLATITDIRWVVAQGERRQYLSKKRGTVPENTWVTGLWEDHNTNEAVISGTQVPTLADYQLQDVTGELANALSGKFLLPNTHKSGANAAGNTAYVLVRAKFTPKKEAFIDRGKTYSDNTAVP--------------------------------------------EYVAGEDFFVGENGQFYVSMKSVTDPKVGGVAGMKAHKYVKGKVLYYAWLNPSTTSP--DSWWNSPVVRNNIYHIHIKSIKKLGFNWNPLVPDPDVPTDPENPLPDQDTFMSVEVTVLPWKVHSYEVDL 501
4 -68.5003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  14  1.GDDNEIEIPKAP------VLEKAQLALAIKSEEGAVTKTGE---TTPTDADVNTLTVGVFGVDGWSVIYTKD--------ATPNSDGTKDVGPQEVYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINLSDE---TLTKGLTMSSKVLDVTLVANTTNYIGYDDEVG--DITVKDISGKEVYGAGPVPLVRDVASIALAGADIGNPENESKSFVLKEVFIASAKGVSSVASTEEWGTIEKDGLLFLTSPNNIDEGSYKKGLQTKYDALAKKHVENDPALNHEFYVYENTKGEVKSGESNHTLLIVKGDYTYLPQGAKES---------------------------------------------------------------------------------------------ITKENCYYAIPVGEEVTIDGTEKRSKFYVQRNYKYEISLT-IIGPGSE------------IPYDPMISTN--VSASVKVEPWNVKTIHEEV 401
5 -61.5004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  15  1..........GKDNEAEPVVETNATVSFIIK---SGESRAVGDD---LTDAKITKLTAMVYAGQVQEG----------IKTVEEDGGVLKVEGIPCKSGANRVLVVVANHNYEL-----TGKSLNEVEALTTSL--TAENQNAKNLIMTGKSAAFTIKPG----------SNHYGYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYSFKPADAKIAALVAKKDSKIFGNSLVSNTNAYLYGVQTPAGLYTPDAAGETY------ELEASLNTNYAVGAGFYVLESKYDASNE--LRPTILCIYGKLLDKD---------------------------------------------------------------------------------GNPLTEPALTDAINAGFCDGDGTTYYPVLVNYDGNGYGAITQGQNKIVRNNHYKISLN-ITGPGTN------------TPENPQP-VQANLNVTCQVTPWVVVNQAATW 369
6 -61.2004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  13  1.GNDEVENLGNNVPG----EQAVLTIKLKGDGDNQAQSRAAG-PATDTEDAVINNYLVFLFREGGALDCAPYEGSSN------------AAATITTGTTAAKKAYVVANTGALAGGLFATVKTETDLLAVTGSLMDNTDNATKTNLWMSGES--------------------------EVKFNGGTNAQVTVSLSFVAAKIQLIVKDNRKNMTGTITITDDAAVLLFAGKKGRFFSAAEKVTQNEFYTGFNQYTGAFDSGVTTSTALSDAVSPGDFTINAGSTVFNHFYTFGNDGTTQ------PTILAIKSTKTVGG----------------------------------------------------------------------------------------------------TSSPIFYPILFTNTDAR--------HTIEPGKSYTVTVT-LNGDVAAGGGGGTTDPEEP-------VVSSSIEVTVTAAQWVTQPVDKEF 347
7 -56.5004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  12  1.GKDEDP----------VLPLEGAKLSVAVKASGATKAYNPNDVNELEGEAYINNLAVVVFNETGTELLGYKW------EALSGAEHSAIIADVPTTKAVRARIIVLANVPRDLLSTVST-------YDEFQTRLVDLSSQSQTNLTMSSQVIVTKSALSEEDNYLGYT---------DLGDQNVDGISDPILLTRVAARIDLVNISTRFAGTAGREVRIDAVGIYNMKTKSYYFSEADWGETEAP-------------DAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDH------TMIAVKATLRGNSSYQDHT--------------------------------------------------------------------------------------------------KIFTAVINAGGLQNGYD---HNFIRRNYVYRLRIY-FDGESFD---NIPVTPDPGPGPDPEPEVDTNLNIAVQVVGWGPVMQHPVI 354
8 -55.0003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  11  1.......................GDVAYELPAHTTRAQLSLVNNGDVEQQEKINSMRFIVFGSTPGGVRLDVNEHILLSTPETATDIDAQLLE--VTSSNDILVVVIANEPQSLTSQLDGIANLLTLQEMIYDISSDGQIISATGMPMTGVIR-------------------------DISIAPDETKTVQMVIERAVARVDVFIEAIDGGAVTGYTAGSTSVTLHNFSHDSYFVMGNVGNGTRDNADSSKNYGKVKEDVSESTAATTETWAYSSAPGAENRKLLCSFYTAERLFKSDYS---DRLSISMANVLKGPSDVTGITG--------------------------------------------------------------------------------------------------KVIESVTKVDGTGSPTAQPFTEIRRNNVYQVTAR-VGKIGI-------------------------QILTISVEDWGERQDDMDL 347
9 -51.9005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  12  18QGAMRGVDPQPDP------LQPDVYLLVNARAAHTNGEESINMD-AEDFEDRVHSLAMLVFDSNTGEKVAEHFSS-------SIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQ-TAMASIVNKSDMNHFMQVFRDYHNATNNNGFPMSRMYSN---------------QTVTIGGTITQPLPFKPDGENNVKLQRVVAKLDVNIVEG--------VENLQKIELCNANVHYRLVPNQSEP---------------------------IQFYGPVELRRVGATNQWLGYMPEAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQ-----------------------------------------------------------------------------------YLPFAKGLLADKP------SYTVYRNRHYIYRIK-TLPDK--------------------------IEVKYSICDWNIVTNDTYM 349
10 -44.8004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  15  2....................DRSIEISIRVDDFTKTGVRY-ERNQGSAAERLITNLYLLLFDQSGANPAKYYITGNTFTGGTWLPDDMKVKLDMTQSEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTAMPWSTDIASPFLMSGN---------------------------KTHDFLANRLLDNVPLVRAIAKVELNISLSEKPIIVNGSLSEFKFRYVNFDKETYVVKPTTKPDNLISS----------------ANGVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGK----VTALRIVTYLNERDSKGATVEVALP----------------------------------------------------------------------------------------RVDDGTLPPPEFGPELYRLPL----PDKILRNHWYKYEVE................................................... 304
11 -44.5003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  11  1............GEVPIGFDTDELSFDMSLVLLGDMQTKASDPTYATTEELTIQNCHVAVFDKDGKRIYFKNFGEMKTIGNLSGYELQLEGVRTFGKEDKKVSVLVVANANNANNSPFDNLTTYDGVDNSYTAKTIAKGPVTASLLVKIGKSET-------------------------TLKYNQDNAPVTVSLIQLSAKIEYTGVYKKENGELLEGFSLTKVAGLNASSKITIFNTSAVENGAFSD..................................................................................................................................................................................................................................................................... 218
12 -43.7005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  14  1.........................................ERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIWLPDDMKVKLDMTQSEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTAMPWSTDIASPFLMSGN---------------------------KTHDFLANRLLDNVPLVRAIAKVELNISLSEKPIIVNGSLSEFKFRYVNFDKETYVVKPTTKPDNSSANGVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGKVTALRIVTYLNERDSKG------ATVEVALP--------------------------------------------------------------------------------------------------------RVDDGTLPPPEFGPELYRLPL----PDKILRNHWYKYEVE................................................... 281
13 -28.5004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  8  1GERIYEDLAPCPHG-----------VSLRFIY-------DYNMEYANAFAKKVDCLTLLVYDENGNYVDTRIVTGTELQDENY--------RMKLDLKQGNYHFVAYGGLACNMKYTPGEGTGYTDLQVELDSECLTNPRRKNLHGLYWGE---------------------------LTLATADLYSEGTVEMMKNTNNIRVVLQQMNGEPVDDKKFE---FEITDDNILF-------------------------------------------SYDNNLLENGMVTYTPWAQGQASAGFTDEGR-----------------------------------------------------------------------------------EVVVAYAELSTSRLMVRDWYSPKLTVRRKADGVEIINIPLINYKSDLYASMDSQEFLDRESEWSMIFF--------------------------SPNLEWIKTYIKINDWTVRINDIR. 309
14 -26.8003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  10  2ASCDNED------------PECRLSVKFKYDY---------NMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGNY--------LMEVELPVGQYQFMAWAGARDSITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVI--------------------------NVNFDGTVHQTETINLIRDTKIVRFGFQ--SYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDV-------------------------LSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLV----------------------------------------------------------------------------------------------------------------LTEKASGKRVFDINLIDMTNAEGKNLSTQEYLDRQSNYHIIFF----------------------------SESWLAVQIVVNGWVHRIQEEN. 295
15 -25.2003pay_A mol:protein length:314 putative adhesin  ali model follow..  11  1GSCDRED------------PRCELWLEFVFDY---------NMEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAALVGGNR--------SLTDELDFGSYKVLTVGSLSDRGNKLVPGTTTLQQVIVSLKRETGGVNFEFQHLYF--------------------------EVVEVDHLPSNTNHKIYPVNLIRDTNRFNLALMGYEENKVDGTQYT---FEIQAPENAVY------------------------------------------SWENEPTGQGPITYVPYYTGPGEISDVVMSARLNT---------------------------------------------------------------------------------------------LNRSGWDYKFIIRDANTEAEVWSYNLRPVSRYDGTELPFQEYLDRQSEWNLVFT------------------------VEKNGGGFLQIGIVVGTWIHWLHGMEV 314
16 -14.9005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  6  1..CPRG-------------------VYVNFYSQTECAENPS--------PAEVARLNVYAFDKDGILRSANVFEDVQLSAA--------KEWLIPLEKDGLYTIFAWGNIDDHIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSP---------------------VVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPENYEIKLASSNGSYRFDGT...................................................................................................................................................................................................................................................................................... 175
17 -14.8004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  9  1GAAGSPEEDMEDR-----VRIDPVAGGYYPSISPSAQTRGATPDGETLKDRPISTIRLVVYDDAKNLLEEYS-SLLYPCEVDDNGAVISSSSTPLYMKAGTYYFRILSPAKALNSKGFVNIGNGEYLLATDDRYTQTAMTAVT---ITKID---------------------------EGGTLNNVQTLYLPPIINQTARMQFTVRAGEGVHTL--EMLAEGIEISGIQQPL----------------------------------DNTTSFDWVNGDVLPVKVGDQSASVRITQATRNADNSLVAHTGV----LPTDARSHSISVLLN-----------------------------------------------------------------------KVNGNPTQYQMLLTGLYLTAGHSY--------------------------NYTATVKI---------------------------SNGVTVLTWQNRSWTENVVMDK. 327
18 -13.8003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  10  1.GSDDREM----DDGRWKASALRVPLQVSSAVKQEVVTRLAPDPVPLTEG----AIGIFLSGTEPESGSGYKVIDNRKYVYSEGHWGPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQD-------------YVETEDIYYALN-----------------------------TMINGFTPAITFDMVHAYSLVELKISRENYFMPC--EISKITLKNSNLIKKGTI---------------------------------------NIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDA--------------------------------------------------------------EGGEFGLSVSLVIDGQQMLVEIPYSELGEFRQGEKY--------------------------VIGLKIKG-----------------------------TEIVPTVKALEWE........ 295
19 -13.5004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  8  1..............GEMTEMNPDTNRTIGLDVYTEVQTRGTETTTSTLKAN--AGFGIFAYQTSSAGWNSEKGNTTNEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAKGAEVKTSNNWKDMIDLVTDCHT------------------------AIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDTKIFVTGLKLDPGSTTLYNKAVYKFDNDT----------EAISPDASYFSTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKI------------------------------------------------------------NYDIVTKVTDTSNLTSTITNKEVSLPKNTFKKGTKH--------------------------TYVLTIKM---------------------------NAIKITVEDNMEGWT--DSDINV 357
20 -12.7005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  9  4TGCSRRDILDDYPVSG---------VDIKLDWDGV-------------TDQLPEGVRVIFYPKNGDGRKVDKYLSVR--------------GGEMKVPPGRYSVVVYNYNTESIR----RGEESYETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKIE------------------KSEEVLRLDWKLESVVKKYSFAVEAKGLE-----YVATVVGSIDGLSDCYCIGKGRGVCSSQPIYFEVKKGDN............................................................................................................................................................................................................................................................. 196
21 -9.4704k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  13  1.............GGENTPQPTDGRVALEATSGIRMNTRAYDKTWEAGDA-----IGIYMLNGDATDGNGNRKYTTAQTAENGSFTAAEGQTIYFPVDASQRDFVAYYPYRETLADGNVYTVDVSV-----------QTPQKDIDLMGAAK----------------------------VEGKDKTDPKVAFVFTHKLVKLDITIKADGTSLTD-ADLAGTTVSISNQQTAATYNVVTGG-------------------------------------------------DATVTTGTTKEIVLHTDGLKAEGIVLPAASTAGMALT---------------------------------------------------------------------TVPGLEGQAFHWDVNSAAQSKAFVAGSKY--------------------------LYTITISK-------------------------------VEVSSKVEDWT........ 270
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.