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Query: 4kvr_A mol:protein length:244 Aldehyde decarbonylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GMPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVSLast
1 -85.5004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model  100  1GMPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS 244
2 -82.9004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  98  1GMPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS 244
3 -73.8004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  65  5..................AVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAG 230
4 -73.7005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  58  2..............QQLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIG 231
5 -73.5005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  56  9.....................AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLAS 231
6 -73.2004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  61  6...................ASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAA 230
7 -70.0005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  39  2.....................TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLAAARMVG 227
8 -68.9005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  60  32...................ASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA 256
9 -66.9005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  65  32...................ATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAA 256
10 -49.9004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  12  6.....................RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED-VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK--NRMQGAINFWFPRAVEMLHMTWSLLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDK........ 226
11 -45.7005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  8  6........................FSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVR-LPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-----VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI................. 209
12 -45.2003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  12  20.....................EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAMLQDAINRFWWPALMMFGPNDDNWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPD......... 246
13 -45.0004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  12  2GSSGSTEEQRFDQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQAQRQMLQDAINRFWWPALMMFGPNDDNWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPD......... 249
14 -42.0004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  14  49.................SQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALAEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDEELFIRYMDELWPHVIGYVDYLTERTYALEIDYDLLRHYVIKQFNLRKKQISRTK............. 295
15 -41.3003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  14  24.LKLFAGGNAKFWHPADTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELSPAAQVRASVTYNHIVEGMALTGYYAWHKICVPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEDQPPFDLSKDDFLQYSTDKGMRRFGTISNAR............. 284
16 -39.8003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  11  1..........................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLANIGLDLLGQARNFLSYAAELAGEGDEDTLARDERQFSNLLLVEQPNGNFAD-TIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNVSGQKMQQAINKLWRFTAELFDADEIDEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGG... 225
17 -38.3004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  11  2.............................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLANIGLDLLGQARNFLSYAAELNGCGDEDTLGRDERQYSNLLLVEQPNGNFAD-TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGELSNRKMQQAVDNLWRFTGELFLADEVELSLIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGG... 223
18 -38.2002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  12  109........................TRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATAVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNLQKWIDHWEPQAYEALKPLAEAS-----VGIDGLNEARAELSARLKKFELQSRGVSA........ 333
19 -36.9001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  12  88........................NKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPR........... 325
20 -34.9003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  83........................ENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREAQKKVDMAIWRAWRLFAVLTGPVMDYYTPKEFMYEWIIGQFERSLIDLGLDKPWYWDLFL..... 321
21 -34.8001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  11  93........................VRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPR........... 330
22 -34.3001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  83........................DRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKGNRNMATFGMMDENRHGQIQLYFPYANVKRSRK-TNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDAQQMVDVAIWRSWKLFSVLTGPIMDYYTPKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDL.. 324
23 -34.3001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  111........................QMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPAITNCATYETADHLRWLTHTAYRTRELANCYPDVENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGN--REVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL............... 330
24 -33.8003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  10  96.....................DVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVLQKYLNFHYSVTSDLYGAEISTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSA 355
25 -33.6003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  11  34.EASFWTAEAVDLSK----DIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK............. 275
26 -32.4002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  16  87........................NISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGARVACQMQAIDELRHSQTQQHAMSHYNKHFNG-DRVWYLSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKEVYYEQNGGALFKDLERYGIRPPKYQDVANDAK.. 328
27 -32.2003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  9  108........................QMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPAISNCCILQTADSLRWLTHTAYRTHELSLTYPDAEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENNHAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQ--YLERSTSLRASILTV................. 327
28 -31.8001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  9  55........................DPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRA---EKYTQVETLVYMAFYERCGAVFCRNLAAQIEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADA-KPQLRQLISDRITAWGLAGEPSLKQFVTG... 275
29 -31.7002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  11  58.QASFWTAEEVDLSK----DLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK............. 299
30 -31.7002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  9  58.EASFWTAEEIDLSS----DLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQTEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK............. 298
31 -30.6002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  10  41.EASFWTAEEVDLSK----DIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFFSIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK............. 282
32 -30.4006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  18  60........................AHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRV-TKSQDNRKYMVSLILFSILIENVAILLSFTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPV............. 290
33 -29.5002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  10  84........................LAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMH-PLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKIS-ELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARTIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFSALLLELNAAGIRGAERLVRDFSGARKMVEQLGLDAVDFDFPERPDWSP 341
34 -29.3004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  61.CANNWLPTEIPMGKDIE----KSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFF-ILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYGILGLRASMFIDYVQHIADRRLERIGLKP............. 321
35 -29.3004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  11  22.IAQFWTEEEIAVSS----DKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNYYRRLLKPEVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEP............. 272
36 -29.0002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  49.LANFWTPFEINMSH----DAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNNPTPKTFLESIVYDVILEGLNF-FYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWKIPGINPEDMETYISFIANKRAVQLGMEK............. 300
37 -28.8003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  11  60.QASFWTAEEVDLSK----DLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK............. 301
38 -28.8003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  14  27.TSNFWLPEKVPLSN----DIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAHYRGDDPLKKKIASVFLESFLF-PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISEELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEP............. 269
39 -28.7002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  7  59.EASFWTAEEIDLSS----DLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKEIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILF-IFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK............. 299
40 -28.5004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  14  5..............KKEPIHVVNIGEANPRFAQLLLEQFGG-ATGELSAALQYWVQSFHVAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKS-SQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSDEGTKQTLVHLLTREISHTQMFMKALDSLGKL..................................................................... 180
41 -28.3001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  13  32.TGNFWLPEKVPVSN----DIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDSEENRNLQRKAEIVLQSYRGDEPLKRKVASTLLESFLF-PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEA............. 274
42 -28.3001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  12  27.TSNFWLPEKVPLSN----DIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENKAQIILAHYVSDEPLKKKIASVFLESFLF-PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSEELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEA............. 269
43 -28.3001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  11  37.TGNFWLPEKIPVSN----DIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPTMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENKAKIIMSYYNGDDPLKKKVASTLLESFLF-PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEG............. 279
44 -28.3001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  9  53.EASFWTAEEIELAK----DTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAANDDSLYAERLVAFAAKEGIFQAMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEK............. 293
45 -27.9004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  26.TEQFWLDTRIPLSN----DLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNKAEIINEIYLNGTALEKKIASVFLETFLF-PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDP............. 268
46 -27.9002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  15  20.................................SLEELLGMAIKAEIGAREFYKSLAEKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE.................................................................... 165
47 -27.8006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  10  53.TQNFWLPEKIPVSN----DLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEINTETLQERAKALIPYYVNDDPLKSKVAAALM-PGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSAEMKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYDS............. 295
48 -27.7006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  10  57.TQNFWLPENIPVSN----DLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQILTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEVDNEALQARPKALIPFYTADDPLKSKIAAALM-PGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYES............. 299
49 -27.5001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  10  118.EASFWTAEEIDLSKDIH------NRMNENERFFISRVLAFFAASDGIVNENLVENFSTEPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKEHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFF-IFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKK............. 360
50 -27.5003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  18  10............................ARYNRFVADLFGMMAYGELSAFERFSADARYSPTLRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAM--LPFQAAVDYFHSRTRPADWYESLM-KAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPSRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSGLIA-GLAEKHSKRMTQLGLTG 225
51 -27.5001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  10  99.EASFWTAEEVDLSK----DIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF-IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNK............. 340
52 -27.2001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  11  44.LSFFWRPEEVDVSR----DRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF-SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
53 -26.9002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  14  23...............................IKKLVDKLVKATAAEFTTYYYYTILRMHLEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKD-PKEILKVLLEAEQCAIRTWKEVCDMTDPRTYDLAQRILQEEIEHEAWFLELLYGR........................................................................ 170
54 -26.8002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  16  4................................YTLAEFLAHAIALETEAAERYVELADMMLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSDPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSI................................................................... 154
55 -26.5005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  10  53........................ERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIG-QQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFTTWESIVAFEGVPGWEKAAAEVREAQGGTHLVQDHSGIHTLLTEMDVLD 297
56 -26.2001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  20  5...........................REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCDIVTARLFERIIEEEQAHLTYYENIGSHI........................................................................ 146
57 -26.2001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  11  44.LSFFWRPEEVDVSR----DRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRYCSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
58 -26.1001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  11  44.LSFFWRPEEVDVSR----DRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF-SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
59 -26.1001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  11  44.LSFFFRPEEVDVSR----DRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRF-SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
60 -26.0001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  15  1..........................MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLNSDAQKTVKKIIDQEKEHLRKLLEMKRES........................................................................ 150
61 -25.7004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  16  2.......................PGSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKANDIAALFRSTAEGETGHAHGHLEYLEAVGDPA-----------------TGLPFGTSRQNLQSAIAGETHEYTDMYPGMAKTAFEEIANWFETLAKAERSHANRYTKALDGL........................................................................ 142
62 -25.5002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  15  5............................SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLR-------------VKQAEDVREMLEYARQSEYETIKRYEKRKEQAMTELVVKLEDMIADETNHMEELDRLLNDK........................................................................ 144
63 -24.7002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  13  5.............IDRLQIELPMPKEQDPNAAAAVQALLG--RFGEMSTLMNYM---KALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPESAPLGFAKDVRN-LILDLLHNFFLEVAARTHKLRVYEMTNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKM................................................................ 207
64 -24.1001jku_A mol:protein length:266 pseudocatalase  ali model follow..  12  13......................KPDRSDPIMARRLQESLG--QWGETTGMMSYLSASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVADMRFNVVRESEARLQVSRLYSMTDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGI.................................................................. 198
65 -24.0003sid_A mol:protein length:180 Symerythrin  ali model follow..  19  24................................NNTDANAASSIEVEYECDCMYPTFAEIAPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA--STIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLANMEVATAFEAIVKSETKHANWVKRALENLLEVA.................................................................... 180
66 -23.9004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  41.VKQFWLPEEIALNG----DLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVADGHQRKAVLNFMMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQDDEISLFKAMVASVYLESFLFYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDP............. 290
67 -23.8003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  17  2.............................QGDAKVIEYLNAALRSELTAVSQYWLHYRLQGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCDYPSKMLFEELIADEEGHIDYLETQIDLM........................................................................ 141
68 -23.8002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  18  6.............................QGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................ 145
69 -23.7005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  17  2.............................QGDPEVIEFLNEQLTAELTAINQYFLHAKLQTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMDITSANVFEAILADEEHHIDYLETQLDLI........................................................................ 141
70 -23.6002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  15  10..........................QGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK------LARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTDYTTCDIAKHILAEEEEHEQDLQDYLTDI........................................................................ 160
71 -23.6003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  18  2.............................QGDPDVLKLLNEQLTSELTAINQYFLHSKMQTELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCDATSARLLEQILADEETHIDYLETQLQLM........................................................................ 141
72 -23.6003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  14  2..............AMGTLEAQTQGPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP------------LRIGQNVKEVLEADLKGEYDARASYKESREICDYVSKQLFDELLADEEGHIDFLETQLDLL........................................................................ 156
73 -23.6003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  18  1..........................MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................ 143
74 -23.3001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  15  1..........................MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRAPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPA---------------TDKPIGTLEQMIESAIAGETYEWTQMYPGFAKVAFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT.................................................................... 144
75 -23.3001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  17  2.............................KGDAKVIEFLNAALRSELTAISQYWVHFRLQAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP------------LRIGEGPRETLECDLAGEHDALKLYREARDYCDIVSKNIFESLITDEEGHVDFLETQISLY........................................................................ 141
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.