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Query: 4mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GMQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNRMQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDKALHYNVVLKLast
1 -88.9004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model  100  1GMQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNRMQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDKALHYNVVLK 235
2 -66.6003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  19  15QETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQKQMLQDAINRFWWPALMMFGPNDDNSPARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGH. 255
3 -64.4004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  18  18QETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQRQMLQDAINRFWWPALMMFGPNDDNSPARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPDLQFDEASGH. 258
4 -62.8003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  16  1..........MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDELAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLVSGQKMQQAINKLWRFTAELFDADEIDIA---LSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYR--TGGKK 227
5 -60.6004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  15  2.............NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCGDELAFGRDERQYSNLLLVEQPNGNFADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLLSNRKMQQAVDNLWRFTGELFLADEVELSLVEQGIA---VDPRELQAEWQSAVHTALLDSGLQIPQEAAFR--SGGKQ 225
6 -53.4005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  11  1....MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIP--ADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAELVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQARVSAVVVEALPLTLAMLQSL----AADMRQIGM---DPVETLASFSELFREALESVGFEAVEARR......... 216
7 -51.3003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  22  96.....DVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTR........ 348
8 -51.1004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  8.....LELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDE--LHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDAAELEEANRQNLPLVWLMLNEV----ADDARELGM---ERESLVEDFMIAYGEALENIGFTTREIMR......... 222
9 -50.6004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  8.....TEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEE--LTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATEELEQANKENLPLVWKMLNQVQGD-------AKVLGMEKEALVEDFMISYGEALSNIGFSTREIMR......... 222
10 -50.3005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  11  9.....AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEA--LKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTEGIERANAQNLPIVWRMLNAVEA-------DTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMK......... 223
11 -49.9004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  12  22.....ALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESEELLEANRENLPLIRRMLDQVAGD-------AAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITR......... 236
12 -49.4005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  9.....KELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDE--LIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAEAELELANRQNLPIVWKMLNQVEGD-------AHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYG-G.. 234
13 -48.4004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  13  1GMPTLEMPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESEELLEANRENLPLIRRMADQVAGD-------AAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITR......... 236
14 -45.7005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  13  34.....PTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLA--DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEEAELEAANRQNLPIIWKLLNAVADD-------ARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMR......... 248
15 -45.2005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  10  35......AIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEE--LASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAK--DELERANRENLAIVWRMLDEVAGDALVLGM---EKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAA 257
16 -39.9005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  11  3.....KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKYAVKRVEELFPLAVQIVKEGK--------DKIEPLGY---SIQELVNLMEELKKARINKI.................. 209
17 -36.7001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  10  82..TRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRVFALVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPALNTDLNNAFWTQQKYFTPVLGYLFEKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPR............ 325
18 -33.6002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  13  103..EKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKAQPMRKLVEDTLVVDDWQNILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESELQKWIDHWEPQAYEALKPLAEASVG------------IDGLNEARAELSARLKKFELQSRG............ 330
19 -33.6001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  10  87..TRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPALNTDLNNAFWTQQKYFTPVLGMLFEKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESP............. 329
20 -33.3003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  14  77..ERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAYAKHFFDDIITGRDAISVAIMLTFSFETGFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEMYEWIIGQFERSLIDLGLDKPW............ 315
21 -32.6004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  13  49.SQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAEFRQIYKKAGLFPLLQGIDYLNMDEGRHIQFGIYTIQRIVNEELFIRYMDELWPHVIGYVDYLTEKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRT............... 294
22 -31.4003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  10  43.TRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALWHKICVERAILPMQELVRRIGDDERRHMAWGTFTCRRHVAADANWTVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNA............... 283
23 -31.3001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  77..ERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEMLEWIVAQFERQLLDLGLDKPW............ 315
24 -29.7002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  12  89..........SDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDDDARSAGPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFIDNVPIVQRWIDKWFWRGFRLLSLVSM-DYMLPNKVMSWSEAWEVYYEQNGGALFKDLERYGIRPPKYQDVANDA.... 327
25 -27.9001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  10  105..NDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCSALPDGE-------NAIVEAKSASRYVRQMMGL................ 330
26 -27.6003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  9  102..NEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPGWQGLRELMEFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQYLERSTSLRASILT........................ 326
27 -27.0003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  8  46.SKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVRE-----IIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS-P............. 282
28 -25.6003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  12  1GM---STSPADTARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQAAVDYFHSRT--RPADWYESLMKAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASDETTEVLRERLRSALADDPRLASRLALWGRRLLEALTQAQRVSYEHAFLGSLIGGEDSGLIAGLAEKHSKRMTQLGLT............... 224
29 -25.4002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  10  70.SSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERNIPAVKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQN-----IVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSP-P............. 305
30 -25.3006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  12  60........AHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRVDYLSNNRKYMVSLILFSILIENVAILLSFTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDEETLALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIP............... 289
31 -25.3002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  10  70.SKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFYVKKKADWALRWIADRKSTFGERVVAFAAVEGV-AAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVRE-----IIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS............... 298
32 -24.5002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  8  53.SKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVRE-----IIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS............... 281
33 -24.1001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  10  55........DPSQSTLPRTITDACEILLILKDNLAGHHRELVEHILEDWWGRWLGRWTAEEHLHAIALREYLVVTREV--DPVANEDVRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPLAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETI--AAIAARAADLDVLGADIEAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLA............... 264
34 -24.0002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  61.SHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKE-NPTPKTFLESIVYDVILEGL-AFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGME............... 299
35 -23.2003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  10  72.SKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVRE-----IIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS............... 300
36 -23.1004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  9  34.SSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEK-EVTKKELYMAMVASVFLESY-FYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELS-AEEQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLE............... 271
37 -22.6003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  9  39.SNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQRGDDPLKKKIASVFLESF-WLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIS-LGQREELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYE............... 268
38 -22.5001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  8  49.SNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAILLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKNGDDPLKKKVASTLLESF-YLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLS-EAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYE............... 278
39 -22.5002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  10  71.SSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLRVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERNIPAIKNKALWAAKWINDTNSFAERIVANACVEGI-CAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQN-----IVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCS............... 298
40 -22.5002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  11  81.....PLFLAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMHSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRK--ELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARDAQPMHSLITTLHLRDETAHGSIVVEVVRELYAREQQRRALVRCLPIALEAFEQDLSALLLELNAAGIRGAEEGTRLVRDFSGARKMVEQLGL-DDAVDFDFPERPD.. 338
41 -22.5004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  7  82........DRLSEDERRVILLNLGFFSTAESLVGNNIVLIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEI-TGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGI-VMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEEEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLK............... 320
42 -22.4001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  10  39.SNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMAAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQVSDEPLKKKIASVFLESFLFYPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLS-AIEREELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYE............... 268
43 -22.1001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  5  65.AKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSALQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEK-----IITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNE............... 292
44 -22.0001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  9  111.SKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVRE-----IITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN............... 339
45 -21.8004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  38.SNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAELNGTALEKKIASVFLETF-FTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELP-EDEQEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQD............... 267
46 -21.8001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  10  44.SNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAYRGDEPLKRKVASTLLESFLFYPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVD-DVTRAELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYE............... 273
47 -21.5005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  11  50.....PIWERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRVLPDSHITTIHQEHLDRCEETLGFATVAEISINAYLDLLADDQQVVNSTTVKLHNRDEYCHASISGEMMKQVYEAADRRRFLLEKVVAGLEAFAPDFTTWESIVAFEGVPGWEKGTHLVQDHSGIHTLLTEMDV................ 295
48 -21.4006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  11  65.SNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEAHEWVINTETLQERAKVNDDPLKSKVAAALMPGFLLYPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLS-PEKQAEMKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYD............... 294
49 -21.1001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  9  56.SRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAI-ACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD............... 322
50 -21.0006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  12  69.SNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHEWVVDNEALQARPKTADDPLKSKIAAALMPGF-YLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLS-PEKQAEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYE............... 298
51 -20.8001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  9  138........NRMNENERFFISRVLAFFAASDGIVNENLVENFSTVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFEIGEKAEWALRWIQDADALFGERLVAFASIEGVFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD-PAIVEKIVTEAVEI----EQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNK............... 359
52 -20.3001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  9  56.SRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAI-ACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD............... 322
53 -20.0001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  10  56.SRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD............... 322
54 -19.9001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  8  56.SRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD............... 322
55 -19.4002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  9  13.....VEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGE-IAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVTYGKDPRTYDLAQRILQEEIEHEAWFLELLYGRPSGHFRRS...................................................................... 178
56 -19.3002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  12  1GSTIQEVREGLPIEKMASLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWEM......................................................................... 166
57 -19.2004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  8  53.NGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQT-EEKKAELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFD............... 289
58 -19.2004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  11  17...........ANPRFAQLLLEQFGGATGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDMGPHFLDSQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDETKQTLVHLLTREISHTQMFMKALDSLGKL........................................................................... 180
59 -18.8001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  11  1..........MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRADE-EIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGTLEQMIESAIAGETYEWTQMY------------FAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT.......................................................................... 144
60 -18.5004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  13  1......GPGSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKADV-DIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFGTSRQNLQ------------SAIAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGLVD............................................................................ 144
61 -18.3001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  12  1..........MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFNG-EIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDLVNSDAQKTVKKIIDQEKEHLRKLLEMKREST............................................................................. 151
62 -18.1005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  11  154..........LSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEFKELKKKPVIMKRVHYLDDDREYTESILLFALFIEHVLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPDEEHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLE............... 381
63 -17.2001mhy_B mol:protein length:395 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  7  131..SSEGSIRTIDPYWDEILNKYFGALLYSEYGLFNAHSSVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKATVQEIWQGVQDWNELWAGHAVYDATFGQFARLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSLNAWTEHYLASSVAALKDFVGAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVDVDQKVDAVLAGYK 394
64 -17.1001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  14  2........AGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYG-NMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDAD--QEDATIEAYSQ-----FLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKN............................................................................ 148
65 -17.1003sid_A mol:protein length:180 Symerythrin  ali model follow..  14  24................NNTDANAASSIEVEMYECDCFAEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQIDAVSRGLRRALETALEVETIESAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLEVA.......................................................................... 180
66 -16.9002itb_A mol:protein length:206 TRNA-(Ms(2)io(6)a)-hydroxylase, putative  ali model follow..  12  13...GCPTPDAWIEAALADQETLLIDHKNCEFKAASTALSLIAKYNTHLDLIMMSRLAREELVHHEQVLRLMKRRGVPLRPVSAGRYASGLRRLVRAHEP-VKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEARHYQGYLKLAHNYGDEADIARCVELVRAAEMELIQS....................................................... 189
67 -16.8002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  10  4................YTLAEFLAHAIALETEAAERYVELADMMEAHDTATVFRDMARFSTLHGDEIKQRSRALELPKMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAASADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSI......................................................................... 154
68 -16.8002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  10  5............SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQ-FFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQA------------EDVREMLEYARQSEYETIKRYEKRANLNMTELVVKLEDMIADETNHMEELDRLLNDKA............................................................................. 145
69 -16.1003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  15  1..........MGMQGDPDVLRLLNEQLTSELTAINQYSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVL-------NRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMDK............................................................................ 145
70 -15.8003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  11  17.............PISEEEKEGLIEMREEEKLARDVYLTLYNKWKL-----IFKNIAESEQTHMDAVKYLLEKYNIPDPVKVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISKEEYEEIIS........................................................... 181
71 -15.7005ux1_A mol:protein length:237 tRNA-(MS(2)IO(6)A)-hydroxylase-like  ali model follow..  10  27...AAPTSWSWVEQANAHPMEVLIDHAHCERKAAGAAVQMMFRYLCEPGLGALSPLAREELEHFEQVLALIKARGRYLEPLPSPGYGADLARQ-IRKGEPQRMLDSFLVAGLIEARSHERMALLAEHPDPQLRELYSDLLASEARHFGLYWVLCEQRYPRELIVERLEVLALAEVKALEGALTRPEDVRMHSC.......................................... 217
72 -15.6003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  12  10...........KQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKL-----IFKNIAESEQTHMDAVKYLLEKYNIPDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISKEEYEEIIS........................................................... 176
73 -15.6003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  15  2.............QGDAKVIEYLNAALRSELTAVSQYYRLQEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLAAEHDAR-------TLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMGS............................................................................ 143
74 -15.5005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  12  2.............QGDPEVIEFLNEQLTAELTAINQYFLHAKLQDHKGWT-YTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFHVRVGQSVTEMFQADRE--VELEAIDRLRR-----GIEVMRAKHDITSANVFEAILADEEHHIDYLETQLDLIEKLGESLYLSTVI................................................................. 154
75 -15.5002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  16  6.............QGDPDVLRLLNEQLTSELTAINQYSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVL-------NRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMDK............................................................................ 147
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;