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Query: 4nj4_A mol:protein length:250 RNA demethylase ALKBH5, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSGVDLGTENLYFQSMPERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRLLast
1 -107.0004nj4_A mol:protein length:250 RNA demethylase ALKBH5  ali model  100  1MSSGVDLGTENLYFQSMPERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRL 244
2 -94.4004npl_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  79  1....................DESEYEERRDAEARRVKSGI-KQASIFTLEECARIEAKIDEVVAKADKGLYREHTVDRAPLRNKYFFGEGYTYGAQLEKRGPGQERLYSKGEVDDIPDWVHELVIDRLVTHGVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFLFKPIRVSEPVLHLPVRRGSVTVLSGYAADDITHCIRPQDIKERRAVIILRKTRADAPRL 223
3 -93.4004o61_A mol:protein length:222 RNA demethylase ALKBH5  ali model follow..  100  2.........................QQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRL 220
4 -64.9004qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  16  13..................................RLQDAAVVRPGFLSTAEEETLSRELEPEL-----------------RRRRYEYDHWDAAIHGFRETE-----------KSRWSEASMAIMRRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAGLSLLSPSVMRLVHT------QEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEESGRRISVICRSLPEGMGP. 196
5 -63.4003thp_A mol:protein length:345 Alkylated DNA repair protein alkB homolog 8  ali model follow..  17  100..........................QWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQ-----NSQKSLKHRRVKHFGYEFHYENNNVDKDKPLS--------GGLPDICESFLEKWLRKG--YIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHP--------DGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDGLRTSFTFRKVRQTPCN. 318
6 -55.5004nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase AlkB  ali model follow..  18  3..................................PLAAGAVILRRFAFNAAEQLIRDINDVASQSPPGGYTMSVAMTNCGHLGWTTHRQGYLYSPI---------DPQTNKPWPAMPQSFHNLCQRAATAAG-YPDFQPDACLINRYAPGAKLCLHQDIHPDLRAPIVSVSLGLPAIFQFGGL------KRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKTIDCRYNLTFRQAGKKE... 205
7 -55.0002fd8_A mol:protein length:211 Alkylated DNA repair protein alkB  ali model follow..  18  7.....................................AGAVILRRFAFNAAEQLIRDINDVASQSPFRGYTMSVAMTNCGHLGWTTHRQGYLYSPI---------DPQTNKPWPAMPQSFHNLCQRAATAAG-YPDFQPDACLINRYAPGAKLSLHQDDEPDLRAPIVSVSLGLPAIFQFGGL------KRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKTIDCRYNLTFRQAGKKEN.. 207
8 -54.8003khb_A mol:protein length:219 Alpha-ketoglutarate-dependent dioxygenase alkB  ali model follow..  16  2...................PHMLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPPGGYTMSVAMTNCGHLGWTTHRQGYLYSPI---------DPQTNKPWPAMPQSFHNLCQRAATAAG-YPDFQPDACLINRYAPGAKLSLHQDDEPDLRAPIVSVSLGLPAIFQFGGL------KRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKTIDCRYNLTFRQAGKKE... 219
9 -52.8003rzm_A mol:protein length:206 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  20  12.......................................DSSYTVLFGKAEADEIFQELEKEVEYFTGA-----------LARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW-IPVLERIRDHVSGVTGQTFNFVLINRYKDGDHICEHRDDERELAPPIASVSFGASRDFVFRHKDRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKVLAPRVNLTFRKILLTA... 206
10 -52.8002iuw_A mol:protein length:238 ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3  ali model follow..  15  1MGSSSSGLVPRGSHMRVIDREGVYEISLSPTGVSR----VCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPH----------------WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEDSVDWHSDDEPSLGRIIASLSFGATRTFEMRKKPPPEENGDYVERVKIPLDHGTLLIMEGATQADWQHRVPKEHSREPRVNLTFRTVYPDPR.. 228
11 -52.7004mgt_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  20  12.......................................DSSYTVLFGKAEADEIFQELEKEVEYFTG-----------ALARVQVFGKWHSVPAKQATYGDAGLTYTFSGLTLSPKPW-IPVLERIRDHVSGVTGQTFNFVLINRYKDGDHICEHRDDERELAPPIASVSFGASRDFVFRHKDRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKVLAPRVNLTFRKILLG.... 205
12 -52.1003h8o_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  19  14.......................................DSSYTVLFGKAEADEIFQELEKEVEYFTGA-----------LARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW-IPVLERIRDHVSGVTGQTFNFVLINRYKDGDHIGEHRDDCRELAPPIASVSFGASRDFVFRHKDRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKVLAPRVNLTFRKILLTKK.. 209
13 -52.0003rzg_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  19  14.......................................DSSYTVLFGKAEADEIFQELEKEVEYFTGA-----------LARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW-IPVLERIRDHVSGVTGQTFNFVLINRYKDGDHICEHRDDERDLAPPIASVSFGASRDFVFRHKSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKVLAPRVNLTFRKILLTKK.. 209
14 -51.9004mg2_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  18  12.......................................DSSYTVLFGKAEADEIFQELEKEVEYFTG-----------ALARVQVAGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW-IPVLERIRDHVSGVTGQTFNFVLINRYKDGDHICEHRDDERELAPPIASVSFGASRDFVFRHKDRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKVLAPRVNLTFRKI....... 202
15 -50.6005xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed  ali model follow..  11  3.............................AAPLQYLRPGMVLLKKFLKHDDQVDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFDGAQPPSIPEVFSKIVKDAKARPANDVEELPPLSPDICLVNFYTSSGKLGLHQDKDETKGLPVVSFSLGDTAEFLYGDV------NDVDKASKVDLESGDVLIFGGKSRLIF-HGVSRAKLRPGRLNLTFRQ........ 230
16 -29.3003lfm_A mol:protein length:495 Protein fto  ali model follow..  12  46................................................HKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGGCTYKYLNTRLFTVPANEDAVPLCMSADFPRVGMGSSYNGQDEVDIKSRAAYNVTLLNFFGMGMAVSWHHDENLVDRSAVYSYSCEGPEEESEDDSHLEGRDPDETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGS--QPRFSSTHRVAECST... 312
17 -22.8005iqs_A mol:protein length:315 WelO5  ali model follow..  11  19MSNNTVSTKPALHFLDINATEVKKYPTAIQDIIINRSFDGMIIRGVFPRDTMEQVARCLEEGNDGGMKSILNKNEEFGTKVAQIY---KDYFASSAIFRQACRTMFQGSPDFEEQVESIFHSLSGLPVEIPTGPEGQTYTPATIRLLLEGREIAVHVGNDFL--SDQLSYFIGGELVVEYMDDVEFKIKSNQSQSVAYAPGPGDMLLFNGG---RYYHRVSEVIGNSPRRTIGFLAFSKQRDKI 304
18 -19.3003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  14  2..........................GSDKIENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGN----------------------QTSGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDDGMIRTDLSATLFLSEPENYQGGELV-----QDTYGQQSIKLSAGSLVLYPSSS----LHQVTP--LSGERTAAF........... 184
19 -17.2004xaa_A mol:protein length:223 Putative oxygenase  ali model follow..  14  1......................MTTATLDRAAAIERFDGFANAGPVLAPDAIARLKAGAERLITRFTDEGLRSDDYWNFPVEGDERPVLYRVHNLEKQDWAPERDLLHREELAQLAAAFVDGPVV--------------YALVLKEPYRAAEVPWHRDRVNVGPRTVCNLSICLDDA-LLPDDAEVAKVRATGPVVPVPVSQGDVVVHDVRL-----HGSGPNANGSWRRTIVIEYADPAA... 219
20 -15.8004lt5_A mol:protein length:327 Naegleria Tet-like dioxygenase  ali model follow..  8  67LSKCKTTFQQSFTNANITLKDEKWLKNVRTAYFVCDHDGLAYLPNVLPKELVEEFTEKFESIQTGRKKDTGYSGILDNSMPFNYVTADLSQELGQYLSEIVNPQINYYISKLLTCVSSRTINYLVSLNDSYYALNNCLYPSTAFNSNDGHRIRKPHKDNLDITPSSLFYFG--TEGYLELTD------------NCKVFVQPGDVLFFKGNE---YKHVVAN--TSGWRIGLVY.......... 294
21 -15.7005ybl_A mol:protein length:314 Multifunctional dioxygenase ausE  ali model follow..  10  1MGSSSSGLVPRGSHMPSRLQKFPATAPADEIYAAFKEDGCVIIEGFVPPDQMARFSQEIQPAMEKIQVQVTNDGNSNDRVKRFSKLVTTSPTFRHEILEN-----------------DLMHELLQRVFSKPGEGMGYHFNDTMVIEVQPGAP-RLHRDAPECLVNFFCAVT-GATRLVPGSNRATDCPQYGKIDSVPAIMQPGDCYMMSGKV-----HG-HNATLSDQRRALAFSTIRR..... 246
22 -15.5003w20_A mol:protein length:273 Putative uncharacterized protein  ali model follow..  11  2.........QHTYPAQLMRFGTAARAEHMTIAAAIHA-ADAIVMDIVPDGERDAWWDDEGFSSSPFTKNAHHAGIVATSVTLGQLQREQGDKLVSKAAEYFGIACRVNDGLRTTRFVRLFSDALDAKPLTIGHDYEVEFLLATRRVYEPFEAFAPHCDLKRSFPRQLGGFLTIQGAGMVMWDNRPESRAAERAAKIMLKPQPGQLTLFQSKN----LHAIER--CTSTRRTMGFLIHTEDGWRM 271
23 -15.4005ybm_A mol:protein length:314 PrhA  ali model follow..  11  1MGSSSSGLVPRGSHMPPRLQRFPATASADEIFAAFQEDGCVVIEGFISPEQVARFSQEVDPAMEKIPVEVTNNGNSNDRTKRFSKCVIASPTFRNEIIES-----------------DLMHELCDRVFSKPGEGMGYHFNDNMVIEVQPGAPQRLHRDGPECVINFFCAVT-GATRLVPGSHLERDCPQFGKIETVPAIMQPGDCYLMSGKV-----HG-HNATTTDRRRALALAIIRR..... 246
24 -15.3004iw3_A mol:protein length:229 Putative uncharacterized protein  ali model follow..  10  2.....GSSSSGLVPRGSHMASHISPEHPMLAAVVDDLAGWSQQAHFLPADLVRALAAECRRRDAEGE-----------------------LNPAGVGRGATQEVRETIRGDQIQWIDPGQAEACDQYLAAMDQLRLAINQECHFALYPPGAFYRRHLDRFRDDDRRMVSAVLYLNEGWQPHDGGQLRMFLADGVEHDVEPVAGCLVVFLSGEVP---HEVLP--AGRERLSLTGWFRRRGNDPF 223
25 -15.2004nao_A mol:protein length:326 Putative oxygenase  ali model follow..  9  1MRGSGSMTSQHQEHTGTKRFSIQSDPVEIHRAIVE--DGVAIIEGFLTPEQVQKLNKDVDAPLKADREQLKFKADKKDDPHFWLADF-----IPDHVARVHNLVDFSHCFRHEILNHELLHKICRLTFEESGDY---WLGYGAVIENGPGTEQKWHRDAPEGMLNFFTALT-GKTQYILGSNK-ELGEPDADHPIEYVGLKPGDTTIVSGKI-----HRGSDNRSDKMRRAMPI.......... 239
26 -15.1003nnf_A mol:protein length:344 CurA  ali model follow..  17  1MSSGVDLGTENLYFQSNAMNREQVEQLKQEYEE----KGYCQIKKIFDFSAIKTIQKTLDQAKQESQISKEKVTLKLG---------------GIDDIDTNDHAYDLVKYDFVSSFIQEKLALLNYITGKNLMI----MHNALFSVEPNHKGLPWHVGVGS----PLDKITKEHRGGMQYKITEDVIDYTIKDGYEEDEYNLGDAFFFNKYV-----HQSVPPGLHKLRRAFVIRLVDYDT... 271
27 -15.1002rg4_A mol:protein length:216 Uncharacterized protein  ali model follow..  11  1..............................................MSLAQIKSLFATLSEHGPALDPAEFAASCYSIAEDDDAGQEWCEREGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAFAEDLEFELDGRLEDIWINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRRKGAREELRTFRSVAPKVGDVLLWESWL----RHEVPMNMAEEDRISVSFNYAWGEG... 210
28 -15.1003bvc_A mol:protein length:212 Uncharacterized protein Ism_01780  ali model follow..  10  15..........................................LSDHGPAIDAEEMESSCYAIAEDDEAGQGWCEENGYPGYTS----------------YASLTDLPWRFPIFADLVKSLDAHVAAFAEDLEFDLDGELEDLWINILPEGGSHASHIHPHSVISGTTYVSMPGGTSALKLEDPRRKTARDELRQFIYVTPAVGDVLLWESWL----RHEVPMNMSEDDRISVSFN......... 200
29 -15.0002opw_A mol:protein length:291 PHYHD1 protein  ali model follow..  11  1.........................MACLSPSQLQKFDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLAR-SMYIFKQPHFGGEVSPHQDEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSDNSLFVPTPVQRGALVLIHGEV-----HKSKQNLSDRSRQAYTFHLMEASGTTW 272
30 -15.0004xab_A mol:protein length:252 EvdO2  ali model follow..  10  2....................DAMEVVGTIDHRDREEFRGFAILPQVASESEVAWLRQAYDRL--FVRRATPGAEDFYDIAGQRDREGPPLLPQIIKPEKYVPELLDSPHFARCRSIASAFLDMAEEELEFY--------GHAILKPPRYGAPTPWHQDDEATVESGCLHYLPGGHRGPVLPHHHIDNDDRDPTSAVACPLAPGGAVVHDFRT-----HYAGPNLTDQPRRAYVLVFMSAPAEVA 241
31 -14.9002y33_A mol:protein length:252 EGL NINE HOMOLOG 1  ali model follow..  8  2..........SHMASPNGQTKPLPALKLALEYIVPCMNGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDI---------------RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCI-LNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRN---HEVQP--AYATRYAIT........... 213
32 -14.7003mgu_A mol:protein length:644 PKHD-type hydroxylase TPA1  ali model follow..  9  8.VKGEKERNSKQISLEEDKIKGMFNPKIWDKTFQDGLKNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLANL----------SGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKT--DMSINTYTKGCHLLTHDDVGSRRISFILYLPDPDR-GLRL--PSILPNVPHSDPSAKLVPQFNQIAFFKVLPGFSF-HDVEEVKVDKHRLSIQYHIPQVGE... 252
33 -14.7002g19_A mol:protein length:244 Egl nine homolog 1  ali model follow..  8  2...............PNGQTKPLPALKLALEYIVPCMNGICVVDDFLGKETGQQIGDEVRALHDTGK--------------FTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINAMVACYPGNGTGYVRHVDNPNGDGRCVTCI-LNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRN---HEVQPAY--ATRYAIT........... 208
34 -14.6006ey1_A mol:protein length:257 HIF prolyl hydroxylase  ali model follow..  6  15MDERRPKIGCDKTGLALEKTWQLQKNERLSNMVVNQLNGFCIINNFLGSSCSTEVLQQVLNLYQSGVFSNGQLARNVSVNRIR----------GDKIAWIGGDERGCEAIKYLSSCVDSLISRCNGRLGNYMITGRTK--CMVACYPGSGLGYIRHIDNPNRDGRCVTVL-LNPNWNSQDCGGQLWLYPNNENKVVKIDPIFDRLLLFWSDRRN---HEVKP--AYAMRYAITYFDEKERALS. 246
35 -14.5006ax6_A mol:protein length:235 Procollagen lysyl hydroxylase and glycosyltransferase  ali model follow..  12  25.......TRKEEWEKKYLHPEFLSHLQNFKDFDYTEICNDVYSFPLFTPAFCKEVIEVMDKANLWSKGGDSYFDPRIGGVESY-----------------PTQDTQLYEVGLDKQWHYVVFNYVAPFVRHLNNYKTKDINLAFVVKYDMERQLAPHHDS-STYTLNIALNEYGKE-GCEFIRH----------KFIWQGQKVGYATIHAGKLLA--YHRALP--TSGKRYILV........... 225
36 -14.4005epa_A mol:protein length:279 SnoK  ali model follow..  9  1...........MARSADPDPGGPTTAENLSKEAVRFYQGYVHIPRVLSETEVTAFRAACEEVLEKEGREIWGAGEDEVQVHYVAQAWQKHPELRSLVLH------------------PEISGIALRLAGAPLRV-----SDILVKEPKRTLPTLVHDDETG--LSATLTAWIALTDVMSYRDLADVWPDYPWQPRVAVPVRAGDVVFHHCRT-----HMAEANTSDSVRMAHGVVYMDADA... 238
37 -14.4004kbz_A mol:protein length:238 Egl nine homolog 1  ali model follow..  8  25......................................GICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTK----------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI-LNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRN---HEVQPAY--ATRYAIT........... 206
38 -14.2005l9v_A mol:protein length:252 Egl nine homolog 1  ali model follow..  8  2..........SHMASPNGQTKPLPALKLALEYIVPAMNGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIR--------GDKITWIEGKEPGCETIGLLMSSMDDLICHCNGKLGSYKINGRTK--AMVACYPGNGTGYVRHVDNCNGDGRCVTCI-LNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRN---HEVQP--AYATRYAIT........... 213
39 -14.2004nhk_A mol:protein length:647 PKHD-type hydroxylase TPA1  ali model follow..  18  1MSSGVDLGTENLYFQSMLEEDKIKGPKIWDKTFQDGLKNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLANL----------SGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKT--DMSINTYTKGCHLLTHDDVIG--SRRISFILYLPDPDRKWKSHSILPNVPHSDPSAKLVPQFNQIAFFKVLPGFSF-HDVEEVKVDKHRLSIQ........... 239
40 -14.2005c5t_A mol:protein length:228 Prolyl 4-hydroxylase  ali model follow..  11  10.................PRGSHMEGFETSDRPGVCDGKYYEKIDGFLSDIECDVLINAAIKKG-----------------LIKSEVGGATENDPIKLDPKSRNSEQTWFMPGEHEVIDKIQKKTREFLNKKHCIDKYNFEDVQVARYKPGQYYYHHYDDACPKDQRLATL-------MVYLKAPEEGGGGETTLKTKIKPKKGTSIFFTRKLYKETLHAGLPVKSGEKIIANQWIRAVK..... 222
41 -14.1002a1x_A mol:protein length:308 Phytanoyl-CoA dioxygenase  ali model follow..  9  10...............HPQQFQYTLDNNVLTLEQRKFYNGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTL-------PEILKYVECFTGPNIMAMH---TMLINKPPDSGKKTSRHPLHQD--SDLIVCAWTAMEHILVVKMFHGIQDYEENKARVHLVMEKGDTVFFHPLL-----HGSGQNKTQGFRKAISCHFASADCHYI 260
42 -13.9005ep9_A mol:protein length:305 SnoN,Epimerase SnoN  ali model follow..  14  1MARSADQETEPGVPADLPAESDPAALERLAARYRR--DGYVHVPGVLDAGEVAEYLAEARRLLAHEESVRWGSGA------------GTVMDYVADAQLGSDTMRRLATHPRIAALAEYLAGSPLRLFKLEVLLKENKEKDA-------SVPTAPHHDAFA--AGTALTAWVALVDVMTFWAGAFTRPGEIWMPRVTVPLRAGDCTFHHART-----HSAGANSTDEPRLSTSAVYMDATA... 241
43 -13.8002jij_A mol:protein length:233 PROLYL-4 HYDROXYLASE  ali model follow..  9  6....................GELKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRT------------------------STGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDGPEHGGQRVVTMLMGGETVLPNAEQKVTGDGWSECAKRGLAVKPGDALMFDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIGGR. 226
44 -13.8002hbt_A mol:protein length:247 Egl nine homolog 1  ali model follow..  9  21......................................GICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDI---------------RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCI-LNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRN---HEVQP--AYATRYAIT........... 202
45 -13.6005lbc_A mol:protein length:252 Egl nine homolog 1  ali model follow..  8  2..........SHMASPNGQTKPLPALKLALEYIVPCMNGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLVLHCNGKLGSYKVNGRTK----------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI-LNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRN---HEVQPAY--ATRYAIT........... 213
46 -13.4005v1b_A mol:protein length:240 Egl nine homolog 2  ali model follow..  10  27......................................GICVVDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIR------------------GDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSAMVACYPGNGLGYVRHVDNPHGDGRCITCI-LNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRN---HEVKPAY--ATRYAITYFDADERARAK 221
47 -13.4005iax_A mol:protein length:226 Procollagen-Proline Dioxygenase  ali model follow..  8  4.NNNQIGENKEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKS------------------------------KLARSKVGSSRDVNDIRTSSGAFLDDNELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDSRSAANNRISTL------VMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFDQSLNELTLHGGAP--TKGEKWIAT........... 208
48 -13.2005zm2_A mol:protein length:306 Dioxygenase andA  ali model follow..  9  2....GSSSSGLVPRGSHMPPIRRVNASQGSDAAYQILQGCVIVEQVICPNIIAKISDDVNRVMDKATIG----------AKKGEQTHIINMHNRTIHMGDLVLTSKTYRDELLNL--PFAHEVLEKVFKKD--SGDYWLNMGNILNMLPGAEAQRHRDDMDPATSPDLMINIGGTLLLPKSHT-NADFYANAEDLPAAEMQVGDALIFTGKC-----HGGGANRSDKPRIGLALAAQPG..... 241
49 -13.2004y5s_A mol:protein length:315 Verruculogen synthase  ali model follow..  9  5.............TVDSKPQLQRLAADADVDRMCRLLEGAFILKGLLPFDVVESFNRELDVQMAIPPPERLLADKYPPHFKYVPNVATTCPTFRNTVLIN-----------------PVIHAICEAYFQRTGDY---WLSAAFLREIESGMPAQPHRDDYQPLEAPPVSLSVGATEVILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRV-----HA-NRTTAGKPRRVVLA.......... 226
50 -13.2003kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1  ali model follow..  12  3.......EEDKIKGMFNPKIWDKTFQDGLKKEIEDSQPNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLANL----------SGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKT--DMSINTYTKGCHLLTHDDVIG--SRRISFILYLPDPDRKWKSHSILPNVPHSDPSAKLVPQFNQIAFFKVLPGFSF-HDVEEVKVDKHRLSIQ........... 223
51 -13.0006EC3 Entity 1(prereleased)  ali follow..  15  259.....................................DGFVNAGPVFADDTIARLKAGAIDLISRFTEHGHVSDDYWNYDVEN----------EAPVLYRIHNLEKQDWAERELLFRPELAELAAAFVGSPVVPTA---FALVLKEPKRAAGVPWHRDRANVAPHTVCNLSICLDTALEGPDDIDVPEIRDGGPRVPVPSKVGDVIVHDVRL-----HGSGPNPSDQWRRTIVIEFANPAI... 458
52 -12.9005y7t_B mol:protein length:315 Iron/alpha-ketoglutarate-dependent dioxygenase asqJ  ali model follow..  9  1MMTSKDHVKSQIPRLSAINDLHKIWPTVEE-------HGAAIIESFLSLDIVRRLNEEVDPFVKIEPIPA------AKTKDHPNHVLSTTTRLVNVLAPISKAYREDVLN------SKVLHRICSDAFHVY---GDYWVLMGAVMELAPSNPAQPHRDMPATSINFLVALS-GATHVILGSHKWQNLSNVSMDATVRALMNPGDALLITDST-----HC-AETTGTETRRLLTI.......... 229
53 -12.7005nch_A mol:protein length:268 Leucine hydroxylase  ali model follow..  12  17.....................................DGYVLLEGAFSPEEVHVMRQALKKDQEVQGPHRILEEDGRTVRALYASHTRQSV---------------FDQLSRSDRLLGPATQLLECDLYIHQ-------FKINTKRAFGGDSWAWHQDTDGLPAPRAVNVGVFLSDVVVF-TPAELSQMVEKHPMVSPKAASGSVMLFHPEI-----HGSAPNISPFARDLLIITYNDVANAPK 239
54 -12.7002rdn_A mol:protein length:288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase  ali model follow..  9  1.GSHMTNVTGDYTDCTPLLGDRAALDSFYEEH------GYLFLRNVLDRDLVKTVAEQMREGLVALGAADPHATLEELTIDSFESVDEVAMH----------DYVKYDAFWNNPSTIKVFEQVFEPVFVFLSTTIRYYPSQAGSEEPSFHYLTPFHQDGFYIGPNPLIRTTRESGGVALADRGIPPTEVSEDEHLLHSPMEPGDILLFHAHM-----HKSIPNLSKDPRMSMDTRVQPAKSH.. 256
55 -12.3004mhr_A mol:protein length:314 Ectoine hydroxylase  ali model follow..  9  9..SRQRADAEMRPRLDPVVHSEWTNDAPISARQAAAFDGYIVLEDIFSADEVAFLQKAAGNLLADPAALDADTIVTEPQSNEI-----------RSIFEIHAQSPVMARLAADARLADVARFLLGDEVYIHQ-------SRLNYKPGFKGREFYWHSDEDGMPRMRALSMSVLKKQEYGVPDEESLAELAHRHGIVAPTGKPGTVILFDCNL-----HGSNGNITPFPRANAFLVYNAVSN... 270
56 -12.2004xbz_A mol:protein length:334 EvdO1  ali model follow..  9  11.RGSHMMSSVGDLRVVNRIAECDIRRTGLLPEHVTAFQGVLVVRGLLTPQELADVQEAGRALIDRAWSTRSMEDTVWTLEPDQPGAAPVRIEYVVDKARPIAMLAGH----------PLLLRIMEQLVGPNLIP-----DSMVFKTPAGAPRLAWHRDAGL--AGRVIDAGIESNYWGDDRLTATADQLNDTTGAVPAVMQPGDLLLHNILT-----HGAPAVVGKQRRIYFEYRPAE...... 259
57 -12.0004p7w_A mol:protein length:292 L-proline cis-4-hydroxylase  ali model follow..  13  23..............................................LDQRRLTDDLAVLAKSNFSSEYSDFACGRWEFCMLRNQ---------KQEEQRVVVHETPALATPLGQSLP-YLNELLDNH------FDRDSIRYARIIRISENACIIPHRDYLELEGKFILVLDTNEKCSNTEENN-------------IFHMGRGEIWFLDASL----PHSAGCFS-PTPRLHLVV.......... 181
58 -12.0003emr_A mol:protein length:310 EctD  ali model follow..  10  10...NNQPKILKRKDPVIYTDRSKDNQAPITKEQLDSYNGFLQIKNFFSEDEVIDMQKAIFELQDSIKDVASDKVIREPESNDI-----------RSIFHVHQDDNYFQDVANDKRILDIVRHLLGSDVYVHQ-------SRINYKPGFKGKEFDWHSDDNYSFNGPLMLISLKKQKLGVPDEESLRELTRIGGGISVPTGKAGSVTLFESNT-----HGSTSNITPYPRNNLFMVYNSVKNRLV 274
59 -11.9005m0t_A mol:protein length:294 Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH  ali model follow..  9  5.............TETSKPTLRRIPRSAGDEAIFQVLQGVVVIEGFMSADQVRRFNGEIDPHMKQWELGQKSYQESYLAGMRQLSSLPLFSKLFRDELMND----------------ELLHGLCKRLFGPE--SGDYWLTTSSVLETEPGYH-ELHREHPESMLNFLTALT-GATRVLPGSHLWEDAPPPKADTAIPAVMNPGDAVLFTGKT-----HG-KNNTTDFLRRGFPL.......... 227
60 -11.0002xdv_A mol:protein length:442 MYC-INDUCED NUCLEAR ANTIGEN  ali model follow..  10  54..........................................YGSLFKLTDLKSLCS----------RGMYYGRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDE-LWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVF---ILQLELYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFRG-----TIHQADTPAGLAHSTHVTISTYQNNS... 240
61 -10.9004nhx_A mol:protein length:562 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1  ali model follow..  7  2...GSSSSGLVPRGSHMNGKRPAEPGPARVGKKGKKEVMAEFSDAVTEETLKKQVAEAWSRRTPFSHENFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILFEDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELE--GRRIAFILYLVP-TLDL---YSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSF-HQVSELSEEKSRLSIS........... 248
62 -10.8002fct_A mol:protein length:313 syringomycin biosynthesis enzyme 2  ali model follow..  8  2....................SHMSKKFALTAEQRASFNGFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIANYDRHLDDDFLASHICRPE----------------ICDRVESILGPNVLC-----RTEFFPKYPGDEGTDWHQATDANIANGCLQFIPGTQNSMNYDETKRMTYEPDEASAVPMQMKAGQFIIFWSTL-----HASYPGESQEMRMGFASRYVPSFV... 263
63 -10.6003gja_A mol:protein length:319 CytC3  ali model follow..  6  1MTTVSEQANFTFSPEEVARFER---------------DGYIGPVKIFEPEEMTRRWNIIRRQLLDRSLAIYPDSNGKANISNYDRHLDIDLLAEHIM-----------------------RPEIVDRVGSLIGRNLLCWRSEFFPKYQGDEGTDWHQATHSTEQNGCLQLMPGTHTSMNYDESKGMDYDADESQAYPMVLKPGEAVIFWSNT-----HASLPHTGSKYRMGFAARYVPTQV... 265
64 -10.5001e5r_A mol:protein length:290 PROLINE OXIDASE  ali model follow..  9  69.............................................................................................................TAHVEHVP-YLKEIVTTVFDGTHL-------QMARSRNLKNAIVIPHRDFVELDREV-TFMVLEDSPLAFHS------------EDTVIHMRPGEIWFLDAAT----VHSAVNFS-EISRQSLCVDFAFDG.... 179
65 -10.4001vrb_A mol:protein length:342 Putative asparaginyl hydroxylase  ali model follow..  10  29.........................EEYWPVKPLVARGEVERFTSIPGFEKVRTLENVVGDAVIEESEGITDRFLVSPAEALEWYEKGAALEFDF-----------------TDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYA--KNGGGFKAHFDAYTNL-----IFQIQGEKTWKLAKNENVSNPEDLPDAEIVNLTPGTMLYLRG-----LWHSTKSDQ-ATLALNITFGQ........ 247
66 -10.4004xcb_A mol:protein length:261 oxidase/hydroxylase  ali model follow..  11  18.....................................TGFLVIPGVFGSGEVESFRSELERLDTVDPGFPRTRRYPDLPAASPVFAVNQPLRLLEGYGLRRTKDSVLYLHGGNSELLDLGDRQVGRDLSITHTYHDGKLYCYLSDIQSPEDG-GSHK------------ANFPLLRERAERGENTSLVDSGFPTLSDVFVRSGDVLLLNEAL-----HGTRRKLTEGDRLLTAFG......... 226
67 -9.8504nub_A mol:protein length:384 50S ribosomal protein L16 arginine hydroxylase  ali model follow..  10  14.........................ERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNH-------------------WHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVF---IIQGT-AALQMKQHCPHPDLLQVDPFEAIIDEELEPGDILYIPG-----FPHEGYALE-NAMNYSVGFRA........ 204
68 -9.7405apa_A mol:protein length:220 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE  ali model follow..  13  101.........................................................................................................................PKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIKEGCKIRCANETKT--------------EEGKVLIFD----DSFEHEV--QDASSFRLIFIVDVWHPE.... 202
69 -9.7004y4r_A mol:protein length:454 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66  ali model follow..  11  1...GGEPAWDSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRREREAVLVRSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLCPQAFSTT-VWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAF-----VLQLEGRKLWRVYRPRNFSQDDLGEPVLQTVLEPGDLLYFRG-----FIHQAECQD-GVHSLHLTLS......... 246
70 -9.6904lit_A mol:protein length:407 50S ribosomal protein L16 arginine hydroxylase  ali model follow..  11  42.........................ERHWQKRPVVLKRGFNNFIDPISPDELAGLAME------------------SEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEP-TAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVF-----IIQGTGRRRWRVGEHPDLLQVDPFEAIIDEELEPGDILYIPG-----FPHEGYALE-NAMNYSVGFRA........ 232
71 -9.6204csw_A mol:protein length:406 CUPIN 4 FAMILY PROTEIN  ali model follow..  11  28.........................ANYWQKRPLLIRQALPGFRSPITPEELAGLACELILEKGGAYPWEVRYGPFEPEDFVALPPTHWTLLVQE---------------------VDRLVPEVAALLETVRFVPNWRLDDIMVSYAPEGGTVGAHIDNYDVF-----LVQAWGRRRWQIVPGLEVRLLAHFEPDAEWILEPGDVLYLPR-----IPHYGVALE-DCMTFSIGFR......... 222
72 -9.4704diq_A mol:protein length:489 Lysine-specific demethylase NO66  ali model follow..  13  12.QVDNTGGEPAWDSPLRRVLAELNRIPSSRRRAARLFEWLIYYQGLFSTADLDSMLRNAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLC---------------------PQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAF-----VLQLEGRKLWRVTSSPNFSQDDLGEPVLQTVLEPGDLLYFRG-----FIHQAECQD-GVHSLHLTLS......... 262
73 -9.1301w28_A mol:protein length:331 DEACETOXYCEPHALOSPORIN C SYNTHASE  ali model follow..  15  66...........................................IDFFESEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVELLRFRYFPQ--RMAPHYD-------SMVTL-IQQTPCANGFVSLQAEVGGA----TDLPYRPDAVLVFCGAIATLVTHHVRDQIAGSSRTSSVF.......... 277
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.