Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: 4opw_A mol:protein length:241 Uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240
# Score Template Links and tools%idFirst GADHVKGNGKLSTKKITIDDFNAIKFDGVIDFNYEQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLKAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTAVQQKVIGKGTVEEVKLast
1 -78.1004opw_A mol:protein length:241 Uncharacterized protein  ali model  100  1GADHVKGNGKLSTKKITIDDFNAIKFDGVIDFNYEQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLKAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTAVQQKVIGKGTVEEVK 241
2 -75.6003ljy_A mol:protein length:243 putative adhesin  ali model follow..  71  2AADHVKGDGKLTSKKISVADYNEIKVDGVIDFNYEQSDDPSTVEVTVDQNLHPYVNIEVKDRVLTIAFKGAKVDHFTKFIVKTNSKWLAAAKVSGNANFMVNSPLTGDETVIKANANSLVQLKETVTVGKLDLNVSGSANMVVNHLEADKIECDIDGSGSITIKKGNAKEGDYSIVSSGDIHAFGLAVPQLSCKVTGNGLAEVHATDNLKANVVGKGNIRYKGPTAVQQRIIGKGTVEEVK 242
3 -69.6003jx8_A mol:protein length:250 Putative lipoprotein  ali model follow..  33  3ADKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEV-IGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 250
4 -65.8003lyc_A mol:protein length:241 Putative pectinase  ali model follow..  27  1.....GGDGNITTENIPVSEYDCLELEGGGMVVNTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKETNFRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVL-GGTVGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVNKIKAEIAGSGSVKYKGDPQIQKKVMGSGKIEKVE 241
5 -63.0003pet_A mol:protein length:221 Putative adhesin  ali model follow..  24  1GGEGIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKVRNFKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDI---------------------ESKGVGNVDIQSLTCQKLNVQSMGVGDVKL-EGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTISLSKKGVGTIKNI. 221
6 -47.3004ygu_A mol:protein length:184 putative adhesin  ali model follow..  19  1......GQDAKESEVRKVDAFSSIEITSVGTIHFTQSD-TYSFRIEGREKYVKNTETTVKDGRLLIGFKDKRRNQKDGVTIWISAPDLKEVEFTGVGEFNCEKPLKLDEVSFE---------------------VKGVGEVNVADLTCNVLKVALRGVGSADI-HVVCDYLSAQMGGVGSVTL-SGSAGRADISKGGIGGVNTDNLKIGR............................... 184
7 -6.9406f0t_A mol:protein length:256 Pizza6-SFW  ali model follow..  12  23...AVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPWTGLNTP----SGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVWTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAG........ 256
8 -6.8102zvw_A mol:protein length:275 Proliferating cell nuclear antigen 2  ali model follow..  9  71....................FEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIIT-IKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIP-DAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPV------VVEYKVAEMGYIRYYLAPKI.............. 269
9 -6.6906f0s_A mol:protein length:256 Pizza6-SYW  ali model follow..  12  23...AVDSAGTVWVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTP----SGVAVDSAGTVWVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVFTGLNTPSGVAVDSAGTVWVTDHGNNRVVKLAAGSPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAG........ 256
10 -6.6802odl_A mol:protein length:373 Adhesin  ali model follow..  11  11GTATMQVDGNKTNSVDAIINWKQFNIDQNEMVQFLQENNNSAVRVTSNQISQLKGILDSNGQVFLINPNGITIGKDAIINTNGFTASTLDIS-KALAEIVNHGLITVGKDGSVNLIGGKVKNEGVISVNGGSISLLAGQKITISTYSIAAPENEAVNLGDIFAKGGNINVRAATIRNQGKLSADSVSKDKSGNIVLSAKEGEAEIGGVISAQNQQGGKLMITGD................. 263
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.