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Query: 4ui9_D mol:protein length:121 ANAPHASE-PROMOTING COMPLEX SUBUNIT 15, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MSTLYPSLFPRVTETLWFNLDRPCVEETELQQQEQQHQAWLQSIAEKDNNLVPIGKPASEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEMNDYNESPDDGEVNEVDMEGNEQDQDQWMILast
1 -76.1004ui9_D mol:protein length:121 ANAPHASE-PROMOTING COMPLEX SUBUNIT 15  ali model  100  1MSTLYPSLFPRVTETLWFNLDRPCVEETELQQQEQQHQAWLQSIAEKDNNLVPIGKPASEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEMNDYNESPDDGEVNEVDMEGNEQDQDQWMI 121
2 -10.1006eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model follow..  18  186.......................................................DDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKNNGDDDDYGDEEDPNEEAAF.. 251
3 -9.9506cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model follow..  18  189..........................................................STGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKNNGDDDDYGDEEDPNEEAAF.. 251
4 -7.8706e10_B mol:protein length:287 Exported protein 2  ali model follow..  18  184..TLYTHITPDAVPQL--------PKECTLKHLSSYMEEKLKSMESKKNIESGKYEFDVDSSETDSTKDDGKPDDDDDDDDNFDDDDNFDDDTVEEEDASGDLFKNEKKDENKE....... 287
5 -7.4004fp9_B mol:protein length:335 mTERF domain-containing protein 2  ali model follow..  23  251........................SEAEFLARTACTSVEEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDDEE............. 334
6 -6.9106bx3_B mol:protein length:412 COMPASS component SWD1  ali model follow..  25  339.......................................WSVVIPPKWSALAPDFEEVEENVDYLEKEDEFDEVDEAEQQQGLEQEEEIA---------DLRTREQYDVRGNNLLVERFTI 412
7 -6.7906btm_F mol:protein length:464 Alternative Complex III subunit F  ali model follow..  6  27................FLSAPKDIQEVEKILAADAHG----------------------AHGTAHGESAEASHKEAGHHEAAEASHEEHKGGEHAKVGAADEHTEHLNHVLHQLQNKPW.. 107
8 -6.7405oql_A mol:protein length:904 Periodic tryptophan protein 2-like protein  ali model follow..  4  817...........................RVVARAVAKMRDEIRRLADENVYMVDYLLNQAKSKSNNRAVVGDAEEEWGGLDDFGVKALPSSKPET--------TLDDIMQDDVAESEEEWI. 901
9 -6.3705sy1_A mol:protein length:670 STRA6  ali model follow..  8  506VLGIWRVVITALFNIVHLRLDISL--NRNVEAFDPGYRCYSHYLKIEVSQSHPVMKAFCGLLLQSSGQDGLSAQRIRDAEEGIQLVQQEKKQNKVSNA--------------KRARAHWQL 612
10 -6.2706c0f_v mol:protein length:453 Ribosome biogenesis protein SSF1  ali model follow..  18  328LTELGPRLTLKLVKVLHHEFVQKSSEEIKALEKRHAAKMRLKNIAKKKAVKDAKKQRKLERRKARAAEGGEGQGKDDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE............. 453
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.