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Query: 4v4i_S mol:protein length:110 50S ribosomal protein L24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGALDTEELast
1 -64.9004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model  100  1MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGALDTEE 110
2 -59.1004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  47  1....MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEIKSNN 105
3 -57.1003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  52  1....MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKV-EDGKKVRVAKKSGQVLDK.. 103
4 -56.1001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  51  12..DKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAVASGKTID... 115
5 -55.6003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  32  1..MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRF-EDGKKVRFFKSNSETIK... 104
6 -51.5005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  37  66..HKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPD 173
7 -51.1005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  47  1....MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSAGASSGGIVTQEAPIHVSNVMVVDS-DGKPTRVGYRIDETGKKVRIAKTNGKDI.... 105
8 -51.0005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  44  1....MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTARSGGIVTQEAPIHVSNVMVVDS-DGKPTRIGYRVDETGKRVRISKRNGKDI.... 105
9 -49.6005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  36  65..HKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPD 172
10 -45.7004ce4_Y mol:protein length:216 MRPL24  ali model follow..  33  52..EDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTV-DYRGTMIPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGERVRVSTRSGRIIPKPE 158
11 -45.6003j7y_V mol:protein length:216 uL24  ali model follow..  30  52..EDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPE 158
12 -35.4003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  13  59..KEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTVPVPKLEGQTSHMITIPVSILGKDLRLVADIDDEKTPGKTRTVAVRDYRCVKGQPDLIIPWPK 186
13 -34.1001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  28  39..RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEE-----------VPRPLDTSNVRVTDLDLEDEKREARLESEDDS................ 119
14 -22.0005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  18  46..KRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQ-----------AVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHK...... 136
15 -18.4003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  28  43..RAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKAN------------STVAVGIHPSNVEITKLKLTHHRK.......................... 113
16 -18.2005t2a_X mol:protein length:143 uL24  ali model follow..  28  43..RAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKAN------------STVAVGIHPSNVEITKLKLTHHRK.......................... 113
17 -18.1005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  28  37..RAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGT-----------TVPVGVHPSNVEITKLKLNHNRK.......................... 107
18 -18.0002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  29  46..KALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGA-----------SVPINLHPSKLVITKLHLDKDRK.......................... 116
19 -17.7005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  24  45..RSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGE-----------TVTIGIHPSKVVITKAKLDKDRKALLERKSRATT............... 126
20 -17.6003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  25  45..RSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGE-----------STFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN............... 126
21 -15.4003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  28  45..RSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGT-----------TVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQV.............. 128
22 -11.8002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  23  13.ELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD...................................................................... 51
23 -11.6002ckk_A mol:protein length:127 KIN17  ali model follow..  24  72.......APGKRILVLNGGYRGNEGTLESINEKTFSATIV...................................................................... 104
24 -11.3002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  19  3.SGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM............................................................... 48
25 -11.2005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  18  60.......TKNNKVKVILGEDREATGVLLSIDGEDGIVRMD...................................................................... 92
26 -11.1004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  13  1......FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGPGDHVTVINGEHQGDAGLVLMVEQ----GQVTFMSTQTSREVTITANNLSK.................. 99
27 -11.1003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  30  87.PAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ...................................................................... 125
28 -10.9004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  33  84.KIIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLE...................................................................... 122
29 -10.3002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  31  5.RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV....................................................................... 42
30 -10.3005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  14  4.TLRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNG---PIRRIDSRYIIATSTKVDIKNVDV.................................... 74
31 -10.2002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  30  117VKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV....................................................................... 155
32 -10.1006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  28  2.NAKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV....................................................................... 39
33 -10.1001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  33  2...QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV....................................................................... 37
34 -9.9602mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  21  4.VVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV....................................................................... 41
35 -9.7505ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  31  125.RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV....................................................................... 162
36 -9.7005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  16  35.KLRSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNG---PLRRVNQRYVIATTTKVDISGVDV.................................... 105
37 -9.5505t2a_t mol:protein length:195 eL6  ali model follow..  15  28.TLRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNG---PIRRIDSRYVIATSTTVDISSVDT.................................... 98
38 -9.4701m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  32  192...KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM-ISIFGRMTP............................................................ 237
39 -9.3505xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  28  326.DLRKIFNVGDHVRVIHGKHTDDTGLIVEVNGDKVEFISN...................................................................... 364
40 -9.3005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  35  21.........NKTVKIRQGGYKGKIGIVKEANGDRFRVELH...................................................................... 51
41 -9.2504ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  23  1......LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLK...................................................................... 34
42 -9.2103jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  15  28.TLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNG---PIRRIDSRYVIATSTKVDISSVDT.................................... 98
43 -9.2102e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  35  21.........GQTVRISQGPYKGYIGVVKDATESTARVELH...................................................................... 51
44 -9.0802joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  17  4......IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTG..................................................................... 37

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24