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Query: 4wce_R mol:protein length:105 50S ribosomal protein L24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNNLast
1 -64.4004wce_R mol:protein length:105 50S ribosomal protein L24  ali model  100  1MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN 105
2 -61.8003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  68  1MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLDK.. 103
3 -59.1004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  47  5MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFENGKKIRVCAKCGGALDTEE 110
4 -59.1003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  44  3AKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK... 104
5 -58.5001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  51  14LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGKTID... 115
6 -52.2005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  52  1MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSAGASSGGIVTQEAPIHVSNVMVVDS-DGKPTRVGYRIETGKKVRIAKTNGKDI.... 105
7 -52.1005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  50  1MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTARSGGIVTQEAPIHVSNVMVVDS-DGKPTRIGYRVETGKRVRISKRNGKDI.... 105
8 -49.0005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  40  68MHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKIEDGRKVRYLIKTGEIVDTPD 173
9 -47.2005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  38  67RHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKIEDVRKVRYLIKTGEIVDTPD 172
10 -43.2004ce4_Y mol:protein length:216 MRPL24  ali model follow..  34  54WHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTV-DYRGTMIPSEAPLLHNQVKLVDPTDRKPTDVEWRFEAGERVRVSTRSGRIIPKPE 158
11 -43.2003j7y_V mol:protein length:216 uL24  ali model follow..  31  54WYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFEAGERVRVSTRSGRIIPKPE 158
12 -35.5003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  15  61WKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTVPVPKLEGQTSHMITIPVSILGKDLRLVADIDDEKTPGKTRTVAVRDVSVKGQPDLIIPWPK 186
13 -33.7001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  25  41VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEE-----------VPRPLDTSNVRVTDLDLEDEKREARLESEDDS............... 119
14 -21.5005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  21  48LPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQ-----------AVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGH...... 135
15 -18.9003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  33  45MPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGS-----------TVAVGIHPSNVEITKLKLTHHRK......................... 113
16 -18.7005t2a_X mol:protein length:143 uL24  ali model follow..  33  45MPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKAN------------STVAVGIHPSNVEITKLKLTHHRK......................... 113
17 -18.6005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  31  39MPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGT-----------TVPVGVHPSNVEITKLKLNHNRK......................... 107
18 -18.5002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  24  48LPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGA-----------SVPINLHPSKLVITKLHLDKDRK......................... 116
19 -18.3003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  29  47LPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGE-----------STFIGIHPSNVVLTKLKVDKNRKKILDRKAAKE............... 125
20 -18.0005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  24  47LPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGE-----------TVTIGIHPSKVVITKAKLDKDRKALLERKSRATTK............. 127
21 -15.7003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  31  47MPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGT-----------TVHVGIHPSKVVITRLKLDKDRK......................... 116
22 -11.9002ckk_A mol:protein length:127 KIN17  ali model follow..  21  72...APGKRILVLNGGYRGNEGTLESINEKTFSATIV..................................................................... 104
23 -11.7002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  32  18..FKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD..................................................................... 51
24 -11.2002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  21  7.GFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM.............................................................. 48
25 -11.1005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  27  60...TKNNKVKVILGEDREATGVLLSIDGEDGIVRMD..................................................................... 92
26 -11.1003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  45  91.GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ..................................................................... 125
27 -11.0004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  25  1..FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNG.................................................................... 35
28 -10.9004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  45  88.NIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLE..................................................................... 122
29 -10.3002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  27  10..FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV...................................................................... 42
30 -9.9102lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  30  123..FKVGDMVKIISGPFEDFAGVIKEIDPERQELKV...................................................................... 155
31 -9.8406duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  27  7..FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV...................................................................... 39
32 -9.8002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  15  9..YEVGESVTVMDGPFATLPATISEVNAEQQKLKV...................................................................... 41
33 -9.7405t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  20  8.SCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNG---PIRRIDSRYIIATSTKVDIKNVDV................................... 74
34 -9.7205ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  27  130..FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV...................................................................... 162
35 -9.6401nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  30  5..FREGDQVRVVSGPFADFTGTVTEINPERGKVKV...................................................................... 37
36 -9.4202e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  29  21.....GQTVRISQGPYKGYIGVVKDATESTARVELH..................................................................... 51
37 -9.3602joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  20  4..IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTG.................................................................... 37
38 -9.3505t2a_t mol:protein length:195 eL6  ali model follow..  19  32.SCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNG---PIRRIDSRYVIATSTTVDISSVDT................................... 98
39 -9.2805xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  25  330.IFNVGDHVRVIHGKHTDDTGLIVEVNGDKVEFISN..................................................................... 364
40 -9.2301m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  30  195..FEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM-ISIFGRMTP........................................................... 237
41 -9.2105xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  17  39.SITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNG---PLRRVNQRYVIATTTKVDISGVDV................................... 105
42 -9.2005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  35  60.NIHVKDIVKVIDGPHSGREGEIRHLFRS............................................................................ 87
43 -9.2005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  32  21.....NKTVKIRQGGYKGKIGIVKEANGDRFRVELH..................................................................... 51
44 -9.1804ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  20  1..LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLK..................................................................... 34
45 -9.0003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  19  32.SCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNG---PIRRIDSRYVIATSTKVDISSVDT................................... 98
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]