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Query: 4wx4_A mol:protein length:205 Protease, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGSSEQELAAIVRDLGCGPYFLGTHDKRFPGFLAGNKLACAIVNTAGRETGGVHWLAFGWNPRSRTCYMFDPFGFSDRRLKQIYSFEYEAMLRRSALALSPDRCLSLEQSTQTVQGPDSAACGLFCCMFLHAFVHWPDRPMDGNPTMNLLTGVPNGMLQSPQVLPTLRRNQEKLYRFLAHHSPYFRSHRAAIEHATAFDKMKQLLast
1 -102.0004wx4_A mol:protein length:205 Protease  ali model  100  1MSGSSEQELAAIVRDLGCGPYFLGTHDKRFPGFLAGNKLACAIVNTAGRETGGVHWLAFGWNPRSRTCYMFDPFGFSDRRLKQIYSFEYEAMLRRSALALSPDRCLSLEQSTQTVQGPDSAACGLFCCMFLHAFVHWPDRPMDGNPTMNLLTGVPNGMLQSPQVLPTLRRNQEKLYRFLAHHSPYFRSHRAAIEHATAFDKMKQL 205
2 -93.0001avp_A mol:protein length:204 ADENOVIRAL PROTEINASE  ali model follow..  76  2..GSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM 204
3 -37.8006fdq_A mol:protein length:266 Deubiquitinase and deneddylase Dub1  ali model follow..  14  86...CSKENYRRHLQRTTLLPVFMWYHPTPKTLSDTMQTMKQLAI---KGSVGASHWLLVIVDIQARRLVYFDSLYNMPPENMKKELQSFAQQLDQVYPAYDSKKFSVKIAAKEVIQRGSGSSCGAWCCQFLHWYLKDPLTDALND--LPVDSVERHENLASFVQACEAAVQD................................. 251
4 -37.2005ham_A mol:protein length:274 RickCE  ali model follow..  13  94........LSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIAAVIPIEMGYGHWTVLVAKYDKKDLTFNDSLGNSINYDGQKLPKLIDKTLGNL-------PNKPIIIDEQTKQQTDQSACGVFTVDNGIKIAKGQAILSTEESKGEKGLRLREHHAQILTDAMFKQDAQWIRQQMKTNNNA..................... 272
5 -36.5006fdk_A mol:protein length:266 Deubiquitinase and deneddylase Dub1  ali model follow..  12  71.AVLRGEPIKGPLPISCSKENYTTLLPVFMWYHPTPKTLSDTMQTMKKGSVGASHWLLVIVDIQARRLVYFDSLYNYVMPPENMKLQSFAQQLDQVYPAYDSKKFSVKIAAKEVIQRGSGSSCGAWCCQFLHWYLKDP---TDALNDLPVDSVERHENLASFVQAAEAAVQD................................. 251
6 -35.2005hag_A mol:protein length:273 Deubiquitinase and deneddylase Dub1  ali model follow..  14  100....SKENYRRHLQRTTLLPVFMWYHPTPKTLSDTMQTMKQLAI---KGSVGASHWLLVIVDIQARRLVYFDSLYNMPPENMKKELQSFAQQLDQVYPAYDSKKFSVKIAAKEVIQRGSGSSCGAWCCQFLHWYLKDPLTDALND--LPVDSVERHENLASFVQACEAAVQD................................. 264
7 -34.9005ubw_A mol:protein length:187 Deubiquitinase SseL  ali model follow..  15  2LGSLSSDELAAATQGLVQESPLLSVNYPEKIAQSGLSHNEVFLVNT------GDHWLLCLFLAEKIKCLIFNTYYDLNENTKQEIIEAAKIAGISES--------DEVNFIEMNLQNNVPNGCGLFCYHTIQLLSNAGQND--ATTLREFAENFLTLSVEEQALFNTQTRRQ--IYEYSLQ........................ 187
8 -34.2001euv_A mol:protein length:221 ULP1 PROTEASE  ali model follow..  9  47.RWLNDTIIEFFMNTVAFNSFFRGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGED----LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL------------------------------------DFDYKDAIRMRRFIAHLILTDAL...... 220
9 -33.7002io0_A mol:protein length:232 Sentrin-specific protease 2  ali model follow..  9  67...VERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHKPHEIPQQLNGSDSGMFTCKYADYISRDKPITFTQ----HQMPLFRKKMVWEILHQQLL..................................... 232
10 -33.6003zo5_A mol:protein length:238 SENTRIN-SPECIFIC PROTEASE 2  ali model follow..  9  73...VERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHKPHEIPQQLNGSDSGMFTCKYADYISRDKPITFTQ----HQMPLFRKKMVWEILHQQLL..................................... 238
11 -33.3002xph_A mol:protein length:238 SENTRIN-SPECIFIC PROTEASE 1  ali model follow..  10  73...MERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQ----QHMPYFRKRMVWEILHRKLL..................................... 238
12 -31.9002oiv_A mol:protein length:186 Xanthomonas outer protein D  ali model follow..  12  3.SWLLDGHLRAYTDDLAADSQVVTMLSSADPDQQARAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAYHYDSMAQKDPQQRYL----------ADMAAYHLGLDYQQTHEMPIAIQSDGYSCGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDR............................................... 171
13 -31.9002bkq_A mol:protein length:212 SENTRIN-SPECIFIC PROTEASE 8  ali model follow..  16  79................................DLPNKRVVFLAINDNNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLA-------FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTES............................................................ 185
14 -31.7005jp1_A mol:protein length:220 Xanthomonas outer protein D  ali model follow..  12  42.SWLLDGHLRAYTDDLAADSQVVTMLSSADPDQQARAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAYHYDSMAQKDPQQRYLA----------DMAAYHLGLDYQQTHEMPIAIQSDGYSCGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDR............................................... 210
15 -31.6001xt9_A mol:protein length:212 Sentrin-specific protease 8  ali model follow..  13  13...LRQSDVSLLDPPSWLNDHIIGFAFEEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLA-------FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTES............................................................ 185
16 -30.4006dg4_A mol:protein length:263 Ulp1-like SUMO protease  ali model follow..  11  76.VNTKKGAPNQEPKCTAFTSFFWPRLLSHGPGGCGRLLRRANVRKANFLDIDSSHWTLAVIRPGRRTVSHLDSMAAG--RGSERVKAKLLELVKFVLEDQFVEAEWQAV-DFQAPRQTNGWDCGVFTITNAICLALGVDPAQ----------------------------------AYTEAQLPLQRQRIAAVLLNGGF...... 244
17 -25.1005lnb_B mol:protein length:310 Ubiquitin-like-specific protease 2  ali model follow..  10  62IESSIEKSIIKREQVHLMSSFFYTKLISNPADYYSNVKKWVNNTDLFSKKNISYHWFSCIINNPLVNILTFDSLRQTHSREIDPIKEFLISYALDKYSIQLDKTQIKMK-TCPVPQQPNMSDCGVHVILNIRKFFENPVETIDVWKNSKIKSKHFTAKMINKFDKNERNSARKNLRHTLKLLQLNYISYLKKENLYEEVMQMEE. 297
18 -23.8005haf_A mol:protein length:338 Deubiquitinase SseL  ali model follow..  16  152...LSSDELAAATQGLVTKENILSTQLLEKIAQSGLSHNEVFLVNT------GDHWLLCLFLAEKIKCLIFNTYYDLNENTKQEIIEAAKIAGISES--------DEVNFIEMNLQNNVPNGCGLFCYHTIQLLSNAGQND-PATTLREFAENFLTLSVEEQALFNTQTRRQ--IYEYSLQ........................ 332
19 -17.0003eay_A mol:protein length:323 Sentrin-specific protease 7  ali model follow..  7  85LTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVN------ESSHWYLAVICKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELRHVIKTKREDIRELILKLHLQQQKGSSS................................. 323
20 -14.3006be0_A mol:protein length:302 AvrA  ali model follow..  10  64YEETDLEMMPFLVAQANKKYPELNLKFVMSVHELEGVESARFLVNM---GSSGIHISVVDFRVMDGSVILFEPAACSAFGPALALR-------TKAALEREQLPDCYFAMVELDIQR-SSSECGIFSLALAKKLQLEFMNKADRYLPVSFYKHTQGAQRLNEYVEANPAAGSSIVNKKNETLYERFDNNAVMLNDKKLSISAHK. 290
21 -14.1005dgg_A mol:protein length:190 Uncharacterized protein  ali model follow..  11  14LMPKSQGRIVVMAVLNRYDSHSANAIIETLASDVFNPEVHYIMIPVGP-----GHWRGVYLSKPQGDLELFDPYGPEGAAVLDDYVLDLLNQC-------VPKELVNIRHTGPKHPQGDAYSCGDFTCAYSHKKMK..................................................................... 145
22 -13.7005w3t_A mol:protein length:352 PopP2 protein  ali model follow..  8  120..................................................DDGSHTRAADIRKDASSVIVVDPLRKEKDESAYVDYA--------DNVNMEFGEHAKCAFIPVDIQK-SFFDCRILSLSLALKMHDKDDA----AAFHETLRNGGDPSHHVSRAQQTEELGATLVLDGAPLVDARMMKH------GQAASSVSRY 258
23 -12.7005cra_A mol:protein length:193 SdeA  ali model follow..  13  10...LTQEGMHAIFARMGYGDITSGSIPTIDTGALNRQGFMPVLTGVGPHRDSG-HWIML-IKGPGNQYYLFDPLGKTSGEGYQNILAAQLPMGSTLSV--------------PNGSGLNMGLCGYWVA------SAGLRAHQALNQHNPPTLLNVGQTITNEMRNELDHDGYRKITGWLRAVADEFPEGDPQL-DGKALRENTE. 192
24 -9.6205klp_A mol:protein length:342 Orf34  ali model follow..  10  61FAELDATHLDAMVYIENQRNPGLNLKHFRDHYYLPSAFRAIFPQTCPETGQTLKHHVMADVRLHQGTIIITEPAVIVGAR--YQQLQRHNLTLEDLSESGVPLSQVAIIETQA---AATSDDCVMYSLNYAIKAHKNAAQ................................................................. 206
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.