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Query: 4wyb_B mol:protein length:92 Bud site selection protein 6, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst GSGTFNQVREQVMVAVQSLNPDHDSRVEAIDKAEKMWEMERKLKASNEFDDELENFVGNSNLKKSGGFEEVERIRKQKDEANLRAYFGPGFTLast
1 -59.9004wyb_B mol:protein length:92 Bud site selection protein 6  ali model  100  1GSGTFNQVREQVMVAVQSLNPDHDSRVEAIDKAEKMWEMERKLKASNEFDDELENFVGNSNLKKSGGFEEVERIRKQKDEANLRAYFGPGFT 92
2 -7.4902ko1_A mol:protein length:88 GTP pyrophosphokinase  ali model follow..  17  15........KNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLM--DKLRKVQGVFTVERLSNLE.............. 82
3 -6.9302a3d_A mol:protein length:73 PROTEIN (DE NOVO THREE-HELIX BUNDLE)  ali model follow..  24  6.....................EFKQRLAAIKT--RLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKE............... 59
4 -6.4302mtq_A mol:protein length:73 Designed Peptide  ali model follow..  24  6.....................EFKQRLAAIKT--RCQALGGSEAECAAFEKEIAAFESELQAYKGKGNPEVEALRKE............... 59
5 -6.3303zlj_C mol:protein length:53 DNA MISMATCH REPAIR PROTEIN MUTS  ali model follow..  13  23.........SPAVEALENLDPRSLTPRQALEWIYRLKSL..................................................... 52
6 -5.9304yii_A mol:protein length:90 Anaphase-promoting complex subunit 2  ali model follow..  16  26........IQAMLTNLESLSLD---RIYNMLRMFVVTGPALAEIDLQELQGYLQKKVRDQQLVYSAGVYRLPK................... 87
7 -5.7302lso_A mol:protein length:83 Histone H1x  ali model follow..  12  12...........VVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRKKL........... 81
8 -5.7306E46 Entity 1(prereleased)  ali follow..  8  279...AGGGHAAQFLQDMRRYMPPAHRNLCSLESNPSVREFVLSKGDADACVKALVSLPSKLEAKGTGGTDLMNFLKTVRSTTEKSLL...... 396
9 -5.4303vr0_A mol:protein length:283 Putative uncharacterized protein  ali model follow..  14  209..........SLLGESLGYIVDAKAAKAVLSAVTKILGLEIDMTALDERAKETEEILRKVEEMQRAMMEQVTPKLPHEEED........... 279
10 -5.4202lm1_A mol:protein length:107 Lysine-specific demethylase lid  ali model follow..  16  3............VQRLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKLDLYTLHRIVQEEGGMEQTTKDRKWAK............. 70
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.