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Query: 4xin_A mol:protein length:126 LpqH orthologue, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MASRPPAQLSSTASVTVDGKDRNFHIVTCRQLEWRRMIDIGADFSGAKVAVDENAQPPVVESVHIQNLSGFSGMYSRGGSGSADMSMTGDKFTISGTADGYKTDKPGEPATATFKIVVTCLast
1 -64.4004xin_A mol:protein length:126 LpqH orthologue  ali model  100  1MASRPPAQLSSTASVTVDGKDRNFHIVTCRQLEWRRMIDIGADFSGAKVAVDENAQPPVVESVHIQNLSGFSGMYSRGGSGSADMSMTGDKFTISGTADGYKTDKPGEPATATFKIVVTC 120
2 -50.0004zjm_A mol:protein length:119 Lipoprotein LpqH  ali model follow..  33  1..........SGPKVVIDGKDQNVGSVVCTTAAGNVNIAIGGAATGIAAVL-TDGNPPEVKSVGLGNVNGVTLGYTSGTGGNASATKDGSHYKITGTATGVDMANPMSPVNKSFEIEVTC 111
3 -10.5003uaf_A mol:protein length:117 TTR-52  ali model follow..  19  2...........TSCLMATGV------LKC------------------------PTDPEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGCASDFGPINTPDPY---LYIQHNC 77
4 -7.1001b6u_A mol:protein length:257 P58 KILLER CELL INHIBITORY RECEPTOR  ali model follow..  8  110LSAQPGPTVLAGESVTL----------SCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGGGTYRCFGSFRDSPYEWSNSSDPVSVTGNPSNSWPSPTEPSSETGNPRHLHA 225
5 -7.0701zgz_A mol:protein length:122 TorCAD operon transcriptional regulatory protein torR  ali model follow..  8  6..............VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIGRSDRIDRIVGLEMGADD------VTKPLELR... 107
6 -6.9902pkx_A mol:protein length:121 Transcriptional regulatory protein phoP  ali model follow..  11  4..............LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLTARESWQDKVEVLSAGADD------VTKPFHIE... 106
7 -6.9901ugn_A mol:protein length:198 Leukocyte immunoglobulin-like receptor 1  ali model follow..  10  8LWAEPGSVITQGSPVTL----------RCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITGRYRCYYGSDTAGRSESSDPLELVVTGAYIK--SAQPSPVVNSGGNVTLQC 122
8 -6.8801xhe_A mol:protein length:123 Aerobic respiration control protein arcA  ali model follow..  10  7..............LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALGRDNEVDKILGLEIGADD------ITKPFN..... 106
9 -6.8605eiv_A mol:protein length:203 Osteoclast-associated immunoglobulin-like receptor  ali model follow..  14  14LGAQPATVVTPGVNVTL----------RCRAPQPAWRFGLFKPGEIAPLLFRDVSSELALEEVTPAQGGSYRCCYRRPDWGPGVWSQPSDVLELLVTEE---VALPGPVVGPGANVSLRC 129
10 -6.8001zh2_A mol:protein length:121 KDP operon transcriptional regulatory protein kdpE  ali model follow..  5  5..............LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVARSEESDKIAALDAGADD------LSKPFGIG... 106
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.