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Query: 4xxb_B mol:protein length:148 E3 ubiquitin-protein ligase Mdm2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SFEEDPEISLADYWKCTSCNEMNPPLPSHCNRCWALRENWLPEDKGKDKGEISEKAKLENSTQAEEGFDVPDCKKTIVNDSRESCVEENDDKITQASQSQESEDYSQPSTSSSIIYSSQEDVKEFEREETQDKEESVESSLPLNAIEPLast
1 -42.8004xxb_B mol:protein length:148 E3 ubiquitin-protein ligase Mdm2  ali model  100  1SFEEDPEISLADYWKCTSCNEMNPPLPSHCNRCWALRENWLPEDKGKDKGEISEKAKLENSTQAEEGFDVPDCKKTIVNDSRESCVEENDDKITQASQSQESEDYSQPSTSSSIIYSSQEDVKEFEREETQDKEESVESSLPLNAIEP 148
2 -20.3002cr8_A mol:protein length:53 Mdm4 protein  ali model follow..  30  1..GSSGSSGSEDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSGPSSG............................................................................................. 53
3 -16.8006chs_A mol:protein length:659 Npl4  ali model follow..  4  614SQDTQEALGGNNLDPGEPLAFAAVRLNENNQSSPKPYAPSR........................................................................................................... 656
4 -16.1003b08_B mol:protein length:64 RanBP-type and C3HC4-type zinc finger-containing protein 1  ali model follow..  25  4........HMPVGWQCPGCTFINKPTRPGCEMCCRARPE............................................................................................................. 34
5 -15.8005yvh_B mol:protein length:158 RNA-binding protein FUS  ali model follow..  28  46GGGGGGQQRAGD-WKCPTCENMNFSWRNECNQCKAPKPD............................................................................................................. 85
6 -15.3002d9g_A mol:protein length:53 YY1-associated factor 2  ali model follow..  18  1..GSSGSSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGT............................................................................................................. 37
7 -14.8002crc_A mol:protein length:52 Ubiquitin conjugating enzyme 7 interacting protein 3  ali model follow..  25  1...GSSGSSGPVGWQCPGCTFINKPTRPGCEMCCRARPE............................................................................................................. 36
8 -14.4001w7p_D mol:protein length:566 VPS36P, YLR417W  ali model follow..  9  168NANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSH........ 307
9 -14.0003gj7_B mol:protein length:98 Nuclear pore complex protein Nup153  ali model follow..  23  69.........AIGTWDCDTCLVQNKPEAVKCVACETPKPG............................................................................................................. 98
10 -13.7002ebv_A mol:protein length:57 Nuclear pore complex protein Nup153  ali model follow..  19  27........RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG............................................................................................................. 57
11 -13.7005yvg_X mol:protein length:528 RNA-binding protein FUS  ali model follow..  28  416GGGGGGQQRAGD-WKCPNCENMNFSWRNECNQCKAPKPD............................................................................................................. 455
12 -13.4003a9j_C mol:protein length:34 Mitogen-activated protein kinase kinase kinase 7-interacting protein 2  ali model follow..  28  2......PGHMGAQWNCTACTFLNHPALIRCEQCEMPRH.............................................................................................................. 33
13 -13.2002k0c_A mol:protein length:53 Nuclear pore complex protein Nup153  ali model follow..  19  18........PAIGTWDCDTCLVQNKPEAVKCVACETPKPGTGVKR........................................................................................................ 53
14 -13.2003a9k_C mol:protein length:34 Mitogen-activated protein kinase kinase kinase 7-interacting protein 3  ali model follow..  27  2......PGHMGAPWNCDSCTFLNHPALNRCEQCEMPRYT............................................................................................................. 34
15 -13.1004s1z_F mol:protein length:36 Ubiquitin thioesterase ZRANB1  ali model follow..  29  6........ERGIKWACEYCTYENWPSAIKCTMCRAQRPS............................................................................................................. 36
16 -13.1003gj8_B mol:protein length:92 Nuclear pore complex protein Nup153  ali model follow..  14  4........GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGG........................................................................................... 52
17 -12.9004tpu_A mol:protein length:173 Rubredoxin  ali model follow..  23  127ETMEFTGKLSKPVWRCKVCGYLMDEAPGVCPICKARKE.............................................................................................................. 166
18 -12.8005af6_F mol:protein length:35 TRABID  ali model follow..  29  5........ERGIKWACEYCTYENWPSAIKCTMCRAQRPS............................................................................................................. 35
19 -12.7002wwz_C mol:protein length:32 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2  ali model follow..  30  2........DEGAQWNCTACTFLNHPALIRCEQCEMPRH.............................................................................................................. 31
20 -12.5002ebq_A mol:protein length:47 Nuclear pore complex protein Nup153  ali model follow..  17  7........GVIGTWDCDTCLVQNKPEAIKCVACETPKPGTCVKRALTLT................................................................................................... 47
21 -12.3004owf_G mol:protein length:30 E3 ubiquitin-protein ligase RNF31  ali model follow..  26  1.........ARGRWACQSCTFENEAAAVLCSICERPRLA............................................................................................................. 30
22 -12.3002ebr_A mol:protein length:47 Nuclear pore complex protein Nup153  ali model follow..  21  7........GPEGSWDCELCLVQNKADSTKCLACESAKPGTKSGFKGFDT................................................................................................... 47
23 -12.3001nj3_A mol:protein length:31 NPL4  ali model follow..  36  2........STSAMWACQHCTFMNQPGTGHCEMCSLPRT.............................................................................................................. 31
24 -11.8002mxv_A mol:protein length:43 RNA-binding protein 10  ali model follow..  16  6.........INEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPL...................................................................................................... 42
25 -11.0003gj3_B mol:protein length:33 Nuclear pore complex protein Nup153  ali model follow..  22  3........LGSGTWDCDTCLVQNKPEAVKCVACETPKPG............................................................................................................. 33
26 -10.9006cc4_A mol:protein length:614 soluble cytochrome b562, lipid II flippase MurJ chimera  ali model follow..  10  2...ADLE----DNWETLN----NLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLKSL............................. 110
27 -10.8003gj5_B mol:protein length:34 Nuclear pore complex protein Nup153  ali model follow..  18  3........LGSGSWDCEVCLVQNKADSTKCIACESAKPGT............................................................................................................ 34
28 -10.5002gqe_A mol:protein length:32 Nuclear pore complex protein Nup153  ali model follow..  23  3........MVIGTWDCDTCLVQNKPEAIKCVACETPKP.............................................................................................................. 32
29 -10.4001nnq_A mol:protein length:171 Rubrerythrin  ali model follow..  23  127KAEKGEDIEIKKVYICPICGYTVDEAPEYCPVCGAPKE.............................................................................................................. 165
30 -10.3005a8i_A mol:protein length:214 ARNA  ali model follow..  12  4..............KCNLCGYENDDDALFCIKCGAQKSSEAQQLPQQQPSEPQAQGVVTQQQVVTNPPVQAQVATPQQPAQQPVLPQPEPAQPQPVSSTPAPQQASQPTNR..................................... 100
31 -10.2005itr_A mol:protein length:400 Endonuclease 8-like 1  ali model follow..  5  269..............SSLQDR--HGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSASAA........ 392
32 -10.1002k1p_A mol:protein length:33 Zinc finger Ran-binding domain-containing protein 2  ali model follow..  30  3.........SANDWQCKTCSNVNWARRSECNMCNTPKYA............................................................................................................. 32
33 -10.0005x42_A mol:protein length:195 DotN  ali model follow..  22  31......KIFQRDRYTCQFCGFQAALYQDICCFC................................................................................................................... 75
34 -9.8901n0z_A mol:protein length:45 ZNF265  ali model follow..  20  2SMSTKNFRVSDGDWICPKCGNVNFARRTSCDRCGREKTT............................................................................................................. 42
35 -9.8802j9u_B mol:protein length:76 VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 36  ali model follow..  16  2...AMASADVVSTWVCPICMVSNETQGEFCINCGVPADYELTKSSINCSNAIDPNA............................................................................................ 63
36 -9.8705x42_C mol:protein length:213 IcmJ (DotN)  ali model follow..  19  42......KIFQRDRYTCQFCGFQARLYQDICCFCAQCF............................................................................................................... 90
37 -9.7102lk0_A mol:protein length:32 RNA-binding protein 5  ali model follow..  26  1........XKFEDWLCNKCCLNNFRKRLKCFRCGADKFDX............................................................................................................ 32
38 -9.6701b71_A mol:protein length:191 PROTEIN (RUBRERYTHRIN)  ali model follow..  18  143KEGRVFLREQATKWRCRNCGYVGTGAPELCPACAHPKA.............................................................................................................. 182
39 -9.4605odc_C mol:protein length:184 Heterodisulfide reductase, subunit C  ali model follow..  45  66....DDVLDSDDIWKCTTCY--------TCERC................................................................................................................... 87
40 -9.4005obz_B mol:protein length:167 Putative transcription factor  ali model follow..  9  102SESGRYKCPTCGKHFCIDCDVFAHEVIHNCPGCQADMRPKQDASSNNIGPANGLNNVVDGDA...................................................................................... 163
41 -9.3302avu_E mol:protein length:192 Flagellar transcriptional activator flhC  ali model follow..  21  108QAEEGPLLALTRAWSCNCCHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQLLDEQRVQA.................................................................................... 191
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.