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Query: 4y5s_A mol:protein length:315 Verruculogen synthase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GPEFTVDSKPQLQRLAADADVDRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLADKYPPHFKYVPNVATTCPTFRNTVLINPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPFHRDDATHPLMHYQPLEAPPVSLSVIFPLTEFTEENGATEVILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRVVHAGGGNRTTAGKPRRVVLAYFNSVQLTPFETYRTMPREMVESMTVLGQRMLGWRTMKPSDPNIVGINLIDDKRLENVLQLKAADSPALEVDLQGDHGLSAWSHPQFEKLast
1 -122.0004y5s_A mol:protein length:315 Verruculogen synthase  ali model  100  1GPEFTVDSKPQLQRLAADADVDRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLADKYPPHFKYVPNVATTCPTFRNTVLINPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPFHRDDATHPLMHYQPLEAPPVSLSVIFPLTEFTEENGATEVILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRVVHAGGGNRTTAGKPRRVVLAYFNSVQLTPFETYRTMPREMVESMTVLGQRMLGWRTMKPSDPNIVGINLIDDKRLENVLQLKAADSPALEVDLQGDHGLSAWSHPQFEK 315
2 -98.9005m0t_A mol:protein length:294 Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH  ali model follow..  31  1GPTITETSKPTLRRIPRSAGDEAIFQVLQEDGVVVIEGFMSADQVRRFNGEIDPHMKQWELGQKS-YQESYLAGMRQLSSLPLFSKLFRDELMNDELLHGLCKRLFGPESDYWLTTSSVLETEPGYHGQELHREHDGIPICTTLGRQSPESMLNFLTALTDFTAENGATRVLPGSHLWEDFSAPKADTAIPAVMNPGDAVLFTGKTLHGAGKNNTT-DFLRRGFPLIMQSCQFTPVEASVALPRELVETMTPLAQKMVGWRTVSAKIWTYDLKDLATGIDLKS................................ 287
3 -94.9005zm2_A mol:protein length:306 Dioxygenase andA  ali model follow..  28  9..VPRGSHMPPIRRVNASQGSDAAYQILQEDGCVIVEQVICPNIIAKISDDVNRVMDKATKKGEQTHIINMHNRTIHMGDLVLTSKTYRDELLNLPFAHEVLEKVFKKDSDYWLNMGNILNMLPGAEAQRPHRDDYLYPVQHMDPATSPDLMINITFPLNEFRHDNGGTLLLPKSHTGPNADFANAEDLPAAEMQVGDALIFTGKCVHGGGANRS--DKPRIGLALAAQPGYLTPRESNVNVPRDIVETMTPLAQRMIGWGTVRTKDTYGLNMLQDK--DFHEALGLKSKTA....................... 300
4 -94.6004nao_A mol:protein length:326 Putative oxygenase  ali model follow..  29  7.MTSQHQEHTGTKRFSIQSDPVEIHRAIVEDGVAIIEGFLTPEQVQKLNKDVDAPLKADREQLKFKLADFIPDHVARVHNLVDFSHCFRHEILNHELLHKICRLTFEESGDYWLGYGAVIENGPGTTEQKWHRDQPRYPLVKEGP-DAPEGMLNFFTALTDFDAETGKTQYILGSNKRVELGEPDDHPIEYVGLKPGDTTIVSGKITHRGSDNRS--DKMRRAMPIMIIPSILTPFDATCHLSRELVETMTPLAQKMICRRSMIPAPGTVEVKTGIWCVEAGEQIGLKSNQRAKEDAEAT............... 317
5 -91.5005y7t_B mol:protein length:315 Iron/alpha-ketoglutarate-dependent dioxygenase asqJ  ali model follow..  32  2.MTSKDHVKSQIPRLSAINDLHKIWPTVEEHGAAIIESFLSLDIVRRLNEEVDPFVKIEPIPAAKTPNHVLSTTTRLVNVLAPISKAYREDVLNSKVLHRICSDAFHVYGDYWVLMGAVMELAPSNPAQPLHRDMRFSHPIVEYKPDAPATSINFLVALSPFTAENGATHVILGSHKWQNLSNVSMDATVRALMNPGDALLITDSTIHCGGAETTG-TETRRLLTITMGISQLTPLESNLAVPRPVIESLTPLAQRLLGWASQRSAAPRDIGLLTIRGNSIEKTMNLKAEQPLHDDEAEP............... 303
6 -90.8005ybm_A mol:protein length:314 PrhA  ali model follow..  26  10..PRGSHMPPRLQRFPATASADEIFAAFQEDGCVVIEGFISPEQVARFSQEVDPAMEKIPVEVTN--NGNSNDRTKRFSKCVIASPTFRNEIIESDLMHELCDRVFSKPGGYHFNDNMVIEVQPGAPAQRLHRDQELYPWWNSMGPAGPECVINFFCAVTPFTEENGATRLVPGSHLWPEFTQIGKIETVPAIMQPGDCYLMSGKVIHGAGHNATT-TDRRRALALAIIRRELRPMQAFLSVPMKLAREMSERSQTMFGFRSSVQHCDVDMVHFWNDGKDIAHHLGLISSA........................ 308
7 -90.2005ybl_A mol:protein length:314 Multifunctional dioxygenase ausE  ali model follow..  26  10..PRGSHMPSRLQKFPATAPADEIYAAFKEDGCVIIEGFVPPDQMARFSQEIQPAMEKIQVQVTN--DGNSNDRVKRFSKLVTTSPTFRHEILENDLMHELLQRVFSKPGGYHFNDTMVIEVQPGAPAQRLHRDQELYPWWNSMGPDAPECLVNFFCAVTPFTVENGATRLVPGSNRWPELTLIGKIDSVPAIMQPGDCYMMSGKVIHGAGHNATL-SDQRRALAFSTIRRELRPVQAFLWIPMQIATELSPRTQAMFGFRSSTQHCDVDTVHFWNDGKDIGEHLGLISSA........................ 308
8 -59.7004xaa_A mol:protein length:223 Putative oxygenase  ali model follow..  18  3...............TATLDRAAAIERFRRDGFANAGPVLAPDAIARLKAGAERLITRFTDEGLRSDEGDERPVLYRVHNLEKQDWAPERDLLHREELAQLAAAFVDGPVVPTAYALVLKEPYRAA-EVPWHRDRVNVG---------PRTVCNLSICLDDAGPHNGCLEAVPGSHLLPDDAE-ATGPVVPVPVSQGDVVVHDVRLVHGSGPNAN--GSWRRTIVIEYADPAAPPA............................................................................... 222
9 -58.9002fct_A mol:protein length:313 syringomycin biosynthesis enzyme 2  ali model follow..  10  1GSHMSKKFA-----------TAEQRASFEKNGFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIANYDRHLDDDFLAS-HICRPEICDRVESILGPNVLCWRTEFFPKY--PGDEGTDWHQADTFANASGKPQIEEFGGTITVWTAFTDANIANGCLQFIPGTQNSMNYDETDEASAVPMQMKAGQFIIFWSTLMHASYPHSGESQEMRMGFASRYVPSFVHVYPDSDHIEEYGGRISLEKYGAVQG........................................................ 291
10 -58.3004xcb_A mol:protein length:261 oxidase/hydroxylase  ali model follow..  14  4................VPALTREQLYIFDTTGFLVIPGVFGSGEVESFRSELERLDTVDPGF----------PRTRRYPDLPAASPVFAR-LALDDRLLAPVRDVVNQPLRLLEGYGLRRTKDSVLGDRQVGRDLSITHTYHDGKL--YCPYVKALVYLSDQSPEDGSFCYVQGSHKANSLVDSGFPTLSDVFVRSGDVLLLNEALMHGTRRKLT--EGDRLLTAFGYGPTFFTEWREL-DAETADLRGAGYVDHDVEE........................................................ 257
11 -57.6005nch_A mol:protein length:268 Leucine hydroxylase  ali model follow..  14  1GGRMQLT--------------ADQVEKYKSDGYVLLEGAFSPEEVHVMRQALKKDQEVQGPHRILEED---GRTVRALYASHTRQSVFDQ-LSRSDRLLGPATQLLECDLYIHQFKINTKRAFGGD-SWAWHQDFIVWRDTDGLPAPR---AVNVGVFLSDVTEFNGPVVFLSGSHQRGTVERKEKHPMVSPKAASGSVMLFHPEIIHGSAPNIS--PFARDLLIITYNDVANAPKPA............................................................................. 241
12 -57.1003gja_A mol:protein length:319 CytC3  ali model follow..  14  1...MTTVSEQANFTFS-----PEEVARFERDGYIGPVKIFEPEEMTRRWNIIRRQLLDR---SLAIYPDSNGKANISNYDRHLDIDLLAE-HIMRPEIVDRVGSLIGRNLLCWRSEFFPKY--QGDEGTDWHQAATFAHATGKPQIIAFIGTITVWTAFTHSTEQNGCLQLMPGTHTSMNYDESDESQAYPMVLKPGEAVIFWSNTMHASLPHTGSKTDYRMGFAARYVPTQVQVYPGTENLTEYGDGINLEKYGAVLG........................................................ 293
13 -55.9003emr_A mol:protein length:310 EctD  ali model follow..  15  17.KRKDPVIYTDRSKDNQAPITKEQLDSYEKNGFLQIKNFFSEDEVIDMQKAIFELQDSIKDASDKVIREPESNDIRSIFHVHQDDNYFQD-VANDKRILDIVRHLLGSDVYVHQSRINYKPGFKGK-EFDWHSDFETWHVEDGMPRMR---AISVSIALSDNYSFNGPLMLIPGSHNYFVSCVGIGGGISVPTGKAGSVTLFESNTMHGSTSNIT--PYPRNNLFMVYNSVKNRLVEP............................................................................. 276
14 -55.7005ep9_A mol:protein length:305 SnoN,Epimerase SnoN  ali model follow..  17  7.QETEPGVPADLPAESDPAALERLAARYRRDGYVHVPGVLDAGEVAEYLAEARRLLAHEESVRWGSGA---GTVMDYVADAQLGSDTMRR-LATHPRIAALAEYLAGSPLRLFKLEVLLKENKEASVPTAPHHDAFAFPF------STAGTALTAWVALVDVPVERGCMTFVPGSHLLPDRPGEIWMPRVTVPLRAGDCTFHHARTVHSAGANST--DEPRLSTSAVYMDATAAYRPTGIAFLDDLPGTGADPLRE........................................................... 264
15 -54.8002a1x_A mol:protein length:308 Phytanoyl-CoA dioxygenase  ali model follow..  13  5.SSASFHPQQFQYTLDNNVLTLEQRKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPTISKSEYAPSEKMITKVQDFQEDKELFR-YCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKT-SRHPLHQDLHYF---PFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDENKARVHLVMEKGDTVFFHPLLIHGSGQNKT--QGFRKAISCHFASADCHYIDV............................................................................. 262
16 -54.8002opw_A mol:protein length:291 PHYHD1 protein  ali model follow..  13  2.................ACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVEKGNFLVPPEKSINKIGHALHAHDPVFKS-ITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEV-SPHQDASFLYTEPLGR------VLGVWIAVEDATLENGCLWFIPGSHTSGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLS--DRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQ............................................................... 288
17 -54.5004mhr_A mol:protein length:314 Ectoine hydroxylase  ali model follow..  18  8.PSRQRADAEMRPRTNDAPISARQAAAFDRDGYIVLEDIFSADEVAFLQKAAGNLLADPAADADTIVTEPQSNEIRSIFEIHAQSPVMAR-LAADARLADVARFLLGDEVYIHQSRLNYKPGFKGR-EFYWHSDFETWHVEDGMPRMR---ALSMSVLLAENTPHNGPLMVIPGSHRTYLTCVGHRHGIVAPTGKPGTVILFDCNLMHGSNGNIT--PFPRANAFLVYNAVSNRLEKP............................................................................. 275
18 -54.0004xab_A mol:protein length:252 EvdO2  ali model follow..  19  1...........MDAMEVVGTIHRDREEFRSRGFAILPQVASESEVAWLRQAYDRLFVRRATPGAEDRDREGPPLLPQIIKPEKYVPELLD-SPHFARCRSIASAFLAEEELEFYGHAILKPPRYGAPT-PWHQDEAYMDPR------WRRRGLSIWTTLDEATVESGCLHYLPGGHRGPVLPHHDPTSAVACPLAPGGAVVHDFRTPHYAGPNLT--DQPRRAYVLVFMSAPAEVADP............................................................................. 243
19 -53.5003nnf_A mol:protein length:344 CurA  ali model follow..  13  4GVDLGTENLYFQSNAMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQKTLDQAKQESQISKEKVTLKLGGIDDIDTNDHAYDLVKYDFVSSFIQEKLALLNYITGKNLMIMHNALFSVE--PNHKGLPWHVGVGSFSFT-----KTEDFGASIWIPLDKITKEHGGMQYVSTKIFPGQIDYTIKDGYEEDEYNLGDAFFFNKYVLHQSVPLKPGLHKLRRAFVIRLVDYDTRVDEE............................................................................. 276
20 -52.9005epa_A mol:protein length:279 SnoK  ali model follow..  17  1...MARSADPDPGGPTTAENLKEAVRFYREQGYVHIPRVLSETEVTAFRAACEEVLEKEGREIWGAGED--EVQVHYVAQAWQKHPELRS-LVLHPEISGIALRLAGAPLRVYSSDILVKEPKRTLPT-LVHDDETGLPL------NELSATLTAWIALTDVPVERGCMSYVPGSHLRAREDRQPWQPRVAVPVRAGDVVFHHCRTVHMAEANTS--DSVRMAHGVVYMDADATYRPG............................................................................. 243
21 -50.4004xbz_A mol:protein length:334 EvdO1  ali model follow..  12  20.GDLRVVNRIAECDIRRTGLLPEHVTAFRRQGVLVVRGLLTPQELADVQEAGRALIDRAWSTRSMEEPDQPGAAPVRIEYVVDKARPIAM-LAGHPLLLRIMEQLVGPNLIPTWDSMVFKTPAGAP-RLAWHRDAGLYDNAVGVTGAGR--VIDAGIYLDPAP-EDNCVWCIPESNYWGDDRLTDTTGAVPAVMQPGDLLLHNILTLHGAPAVVGK---QRRVIYFEYRPAEVEWQLG............................................................................. 265
22 -48.9002rdn_A mol:protein length:288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase  ali model follow..  19  1GSHMTNVTGDYTDCTPLLGDRAALDSFYEEHGYLFLRNVLDRDLVKTVAEQMREGLVALGAADPHATEELTIDSFESVDEVAMHDYVKYDAFWNNPSTIKVFEQVFGEPVFVFLSTTAGSEEPSFHYLTPFHQDGFYIGPNQD--------FRTFWIPLIRTTRESGGVALADGSHRRGKRDHSEDEHLLHSPMEPGDILLFHAHMCHKSIPNLSKDPRLRMSMDTRVQPA.................................................................................... 253
23 -42.5006EC3 Entity 1(prereleased)  ali follow..  18  241............IVVVGRARLGAQIRRFREDGFVNAGPVFADDTIARLKAGAIDLISRFTEHGHNYDVENEAPVLYRIHNLEKQDWAERE-LLFRPELAELAAAFVGSPVVPTAFALVLKEPKRAA-GVPWHRDRANVA---------PHTVCNLSICLDTAGPENGCLEGVPGSHLLPDDIDVDGGPRVPVPSKVGDVIVHDVRLVHGSGPNPS--DQWRRTIVIEFANPAISLPS.............................................................................. 462
24 -32.3004rgk_A mol:protein length:418 Uncharacterized protein  ali model follow..  11  53..AEGKNPVPQLHDIINGKVTEEQKAQIKQRGCCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNAAEDNYFGTLAASKPQIYGIYWSTPQQDKRMQAVQIFLNNNRVVTYADRTRRRPPKSSSLGLSPHVDGG--REFPSPAVCSMFRTFQGWTALTPQRTHAGTLNVIPIANA-QWHPLLMEAISPIPDLEAGDTVFWHCDVIHSVENE-HNGEFDSNVMYIAAAPWFAADDFEVDFIGRATIKNLTEIGKQQLGIT...................................................... 417
25 -30.9002csg_A mol:protein length:424 putative cytoplasmic protein  ali model follow..  9  57.KAQGQPVWPIIPELAMGNISDATRAEVKRRGCAVIKGHFPREQALAWDQSMLDYLDKNHFDEVYKGPGTLSASRPEIYPVYWSQAQM--QARQSEEMALAQSFLNRDISIIYPDRIRRRPPGTTSKGLGAHTDSGALYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEA-QWHPLLMAALTSIPPLEAGDSVWWHCDVIHSVAPV-ENQQGWGNVMYIPAAPMCEKNLAYARKEGRFTLRDLNIHGKRALGIDV..................................................... 424
26 -30.9002dbi_A mol:protein length:461 Hypothetical protein ybiU  ali model follow..  9  95..AQGDAVWPVLSDIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDLSASRPEIYPIYWSQAQM--QARQSEEMANAQSFLNRDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALETVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEA-QWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPV-ENQQGWGNVMYIPAAPM--EKNLAYAHKVKAALEKLNIHGKRALGMDV..................................................... 461
27 -25.4006AKZ Entity 1(prereleased)  ali follow..  9  51.TEIAKIGPSYVPKCDDNKLPQQVSELFKQRGCLMIENVIDVDRIDIWFNELVEFCKTHPETAGYTFPNPTSWYNVFWSKPQTEARFHPNMKAIFKAMSKEFNCLIDLDTQLVYGDRIRIREPGKAAALPLHLDKDEDDTGGKSTICSSFRTLQGWLALSNNKSGEGTLRVLPSLKL-KFYPHLHQGIISIPDVKKGSFVFWHCDLPHEVDRE-HNGNGHSSVLYYGQT-PLSITNIQTLLDTRDAFLKNDIDSKRSMGLEEFEKPENMSGG--QAKIRSIANQA.............................. 457
28 -22.9002y33_A mol:protein length:252 EGL NINE HOMOLOG 1  ali model follow..  9  1GSHMASPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNP----------NGDGRCVTCIYYLNK-AKVSGGILRI---------FPEGKAQFADIEPKFDRLLFFWSDNPH----EVQPAYATRYAITVWYFDA--KYLTGEKGVRVELNKPSDSVGKDVF......................................................... 252
29 -22.8005lbc_A mol:protein length:252 Egl nine homolog 1  ali model follow..  9  1GSHMASPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLVLHCNGKLGSYKVNGRTKAMVACYPGNGTGYVRHVDN----------PNGDGRCVTCIYYLNK-AKVSGGILRI---------FPEGKAQFADIEPKFDRLLFFWSDNPH----EVQPAYATRYAITVWYFDA--KYLTGEKGVRVELNKPSDSVGKDVF......................................................... 252
30 -22.6005l9v_A mol:protein length:252 Egl nine homolog 1  ali model follow..  9  1GSHMASPNGQTKPLPALKLALEYIVPAMNKHGICVVDDFLGKETGQQIGDEVRALHDTGVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLICHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDN----------CNGDGRCVTCIYYLNK-AKVSGGILRI---------FPEGKAQFADIEPKFDRLLFFWSDNPH----EVQPAYATRYAITVWYFDA--KYLTGEKGVRVELNKPSDSVGKDVF......................................................... 252
31 -22.3002hbt_A mol:protein length:247 Egl nine homolog 1  ali model follow..  9  1...........MALPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDN----------PNGDGRCVTCIYYLNK-AKVSGGILRI---------FPEGKAQFADIEPKFDRLLFFWSDNPH----EVQPAYATRYAITVWYFDA--KYLTGEKGVRVELNKPSDSVGKDVF......................................................... 241
32 -21.6005iqs_A mol:protein length:315 WelO5  ali model follow..  13  34..........DINATEVKKYPTAIQDIIINRDGMIIRGVFPRDTMEQVARCLEEGNDGGMKSILNKNEEFGTKVAQIYGHAIVGQSPDLKDYFASEQVESIFHSLSGLPVEIPTGPPATIRLLLEGREIAVHVGNDFLLMPAANTLLDLSDQLSYFIPLTV-PEAGGELVVYSLEWNPQEASKYNQSQSVAYAPGPGDMLLFNGRYYHRVSE--VIGNSPRRTIGGFL....................................................................................... 295
33 -21.5005v1b_A mol:protein length:240 Egl nine homolog 2  ali model follow..  10  3.......SEEALPSAPERLALDYIVPCMRYYGICVVDSFLGAALGGRVLAEVEALKRGGVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYKINGRTKAMVACYPGNGLGYVRHVDNP----------HGDGRCITCIYYLNQ-VKVHGGLLQIF---------PEGRPVVANIEPLFDRLLIFDRRNPH----EVKPAYATRYAITVWYFDADERARAKDKYQLASGQKGVQVPVSQ........................................................... 239
34 -21.3002g19_A mol:protein length:244 Egl nine homolog 1  ali model follow..  9  1...MPNGQTKPLPAL--KLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDN----------PNGDGRCVTCIYYLNK-AKVSGGILRI---------FPEGKAQFADIEPKFDRLLFFWSDNPH----EVQPAYATRYAITVWY....................................................................................... 211
35 -20.4006ey1_A mol:protein length:257 HIF prolyl hydroxylase  ali model follow..  8  28....GLALEKTWQLQKNERLSNMVVNQLNTNGFCIINNFLGSSCSTEVLQQVLNLFSNGQLARNVSVNRIRGDKIAWIGGDERGCEAIKYLSSCVDSLISRCNGRLGNYMITGRTKCMVACYPGSGLGYIRHIDNP----------NRDGRCVTVLYYLNP-SQDCGGQLWL---------YPNNENKVVKIDPIFDRLLLFWSRNPH----EVKPAYAMRYAITLWY....................................................................................... 237
36 -20.4004kbz_A mol:protein length:238 Egl nine homolog 1  ali model follow..  9  1.......GSQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDN----------PNGDGRCVTCIYYLNK-AKVSGGILRI---------FPEGKAQFADIEPKFDRLLFFWSDNPH----EVQPAYATRYAITVWY....................................................................................... 209
37 -20.1003w20_A mol:protein length:273 Putative uncharacterized protein  ali model follow..  10  1...MQHTYPAQLMRFGTAARAEHMTIA-ADEADAIVMDIVPDGERDAWWDDEGFSIVATSVTLGQLQREQGDKLVSKAAEYFGIACRVNDGLRTTRFVRLFSDALDAYEVEFLLATRRVYEPFEAPFNFAPHCDDVSYGRDTVNWPLKRSFQLGGFLTIQG-ADNDAGMVMHAEYRETGAIAALERAAKIMLKPQPGQLTLFQSKNLHA----IERCTSTRRTMGLFL....................................................................................... 262
38 -19.7004iw3_A mol:protein length:229 Putative uncharacterized protein  ali model follow..  11  6SGLVPRGSHMASHISPEHPMLAAVVDDLATHGWSQQAHFLPADLVRALAAECRRRDAEGELNPAGVGRGATQEVRETIRGQWIDPGQAEACDQYLAAMDQLRLAINQGLFLGLEDFECHFALYPPGAFYRRHLDR---------FRDDDRRMVSAVLYLNE-PHDGGQLRMFL-----------ADGVEHDVEPVAGCLVVFLSEVPH----EVLPAGRERLSLTGWFRRRGNDP................................................................................ 222
39 -17.2003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  10  4.....................DKIENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQ----FYPPLFNRYQGGE-TFGYHIDNAI--RSTPDGMIRTDLSATLFLSEPE-NYQGGELVI------------QDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGE---RTAAF-----MWLQSMV-RDEGQRRLLFQLDQSIQSLTA........................................................ 212
40 -17.1006ax6_A mol:protein length:235 Procollagen lysyl hydroxylase and glycosyltransferase  ali model follow..  7  37............PEFLSHLQNFKDFDYTEICNDVYSFPLFTPAFCKEVIEVMDKANLWSKGGDSYFDPRIGGVESYPTQDTQLYEVGLDKQWVVFNYVAPFVRHLYNNYKTKDINLAFVVKYDMERQSEAPHHDSS-------------TYTLNIALNEYGKEYTAGGCEF-------------IRHKFIWQGQKVGYATIHAGKLYHRALPITSGK---RYILVSFV....................................................................................... 228
41 -15.9004lt5_A mol:protein length:327 Naegleria Tet-like dioxygenase  ali model follow..  13  75.QQSFTNANITLKDEKWLKNVRTAYFVCDHDGSVELPNVLPKELVEEFTEKFESIQTGRKKDTGYSGILDNSMPFNYVTADLSQELGQYLSEIVNPQINYYISKLLTCVSSRTINYLVSLNDS--HRIRKPHKDNL-------------DITPSSLFYFGNFQNTEGYLEL--------------TDKNCKVFVQPGDVLFFKGNEYHV---VANITSGWRIGLV-YFAHKGSKTKPYYEDTQKNSLKIHKET.............................................................. 320
42 -15.7003mgu_A mol:protein length:644 PKHD-type hydroxylase TPA1  ali model follow..  6  24.DKIKGMFNPKIWDKTFQDGLKKEIEDSQPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIY-------RVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKANTYTKGCHLLTHDDV----------GSRRISFILYLPDPDKWKSHYGGGLRL---FPSILPNVPHSDPSAKLVPQFNQIAFFPGFSFH--DVEEVKVDKHRLSIQGWYHIPQVGEEGYIPGEEEAWVRNNTSTLAQI.......................................................... 274
43 -15.1003kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1  ali model follow..  7  6..KIKGMFNPKIWDKTFQDGLKKEIEDSQPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIY-------RVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKANTYTKGCHLLTHDDV---------GSRRISFILYLPDPDRKWKSHYGGGLRL---FPSILPNVPHSDPSAKLVPQFNQIAFFPGFSFH--DVEEVKVDKHRLSIQGWYHIPQVGEEGYIPGEEEAWVRNNTSTLAQI.......................................................... 255
44 -14.9004nhk_A mol:protein length:647 PKHD-type hydroxylase TPA1  ali model follow..  6  21.DKIKGMFNPKIWDKTFQDGLKKEIEDSQPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIY-------RVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKANTYTKGCHLLTHDDV----------GSRRISFILYLPDPDKWKSHYGGGLRL---FPSILPNVPHSDPSAKLVPQFNQIAFFPGFSFH--DVEEVKVDKHRLSIQGWY....................................................................................... 242
45 -14.0002iuw_A mol:protein length:238 ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3  ali model follow..  12  4SSSGLVPRGSHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYG-YTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDD-------EPSLGRCPIIASLSF---------GATRTFEMRKK-EENGDYTYVERVKIPLDHGTLLIMEGATQHR--PKEYHSREPRVNLTF......................................................................................... 220
46 -13.8003pl0_A mol:protein length:254 Uncharacterized protein  ali model follow..  11  7...............ELPLGRATALQRLRAQGFCVLTP-MPLDAFDMMLPYWEELAPDLHLKDGGHYRYRPTTYNALHGGMERWFEPLSNEMIHLPSWSALLVALGE-YIEAHPFRIDTEGGVGRPTPEGAHRDGVDF---------------VAVVFIGRQGVRGGETRV---------FDAAGPQGVRFTLEQPWTVLLLDQQVIHESTPADPAVPAHRDTLVLTYRSG.................................................................................... 248
47 -13.2004nj4_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  9  14....FQSMPERSDYEEQQLQKEEEARKVK--SGIRQMRLFSQDECAKIEARIDEVVSRAEK--GLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKREWVHQLVIQKLVEHRVIFVNSAVINDYQPGGCIVS-HVDP-------IHIFERPIVSVSF-----------FSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYA-HC---RPQDIKERRAVIIL......................................................................................... 234
48 -12.7005c5t_A mol:protein length:228 Prolyl 4-hydroxylase  ali model follow..  9  32................................YEKIDGFLSDIECDVLINAAIKKGLIKSEVGGATENDDPKSRNSEQTWFMPGEHEVIDKI--QKKTREFLNSKKHCIDKYNFEDVQVARYKPGQYYYH-HYDG----DDCDDACPKDQRLATLMVYLKAPEEGGGGETDFPTLK-------------TKIKPKKGTSIFFYKETLHAGLP....................................................................................................... 205
49 -12.6003rzm_A mol:protein length:206 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  13  5.........................HIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGFSGLTLSPKPWIPVLERI-RDHVSGVTGQTFNFVLINRYKDGSDHICEHRDD-------ERELAPGSPIASVSF---------GASRDFVFRHK-RGKSPSRRVAVVRLPLAHGSLLMMNHPTWYHSLPVRKKVLAPRVNLTF......................................................................................... 199
50 -12.6004mg2_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  13  7...........................RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVAGKWHSVPRKQATYGFSGLTLSPKPWIPVLERI-RDHVSGVTGQTFNFVLINRYKDGSDHICEHRDD-------ERELAPGSPIASVSF---------GASRDFVFRHK-RGKSPSRRVAVVRLPLAHGSLLMMNHPTWYHSLPVRKKVLAPRVNLTF......................................................................................... 199
51 -12.6004mgt_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  14  7...........................RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPAKQATYGFSGLTLSPKPWIPVLERI-RDHVSGVTGQTFNFVLINRYKDGSDHICEHRDD-------ERELAPGSPIASVSF---------GASRDFVFRHKDSRGKSPSRRAVVRLPLAHGSLLMMNHPTWYHSLPVRKKVLAPRVNLTF......................................................................................... 199
52 -12.3003bvc_A mol:protein length:212 Uncharacterized protein Ism_01780  ali model follow..  10  10..................................LYHAPLSDHGPAIDAEEMESSCYAIAEDDEAGQGWCEENGYPGYTSYASLTDLPWR----FPIFADLVKSLDADGRALELEDLWINILPEGGHASHIHPHS----------------VISGTTYV-SMPGGTSALKL--AAPARRKTARDELRQFIYVTPAVGDVLLWESWLRHEVPMNMSEDDRISVSFNYRWAEG.................................................................................... 206
53 -12.3003rzg_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  15  9...........................RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGFSGLTLSPKPWIPVLERI-RDHVSGVTGQTFNFVLINRYKDGSDHICEHRDD-------ERDLAPGSPIASVSF---------GASRDFVFRHKDSRGKSPSRRAVVRLPLAHGSLLMMNHPTYHS--PVRKKVLAPRVNLTF......................................................................................... 201
54 -12.2003h8o_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  14  3.....................HSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGFSGLTLSPKPWIPVLERI-RDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDD-------CRELAPGSPIASVSF---------GASRDFVFRHK-RGKSPSRRVAVVRLPLAHGSLLMMNHPTYHS--PVRKKVLAPRVNLTF......................................................................................... 201
55 -12.1002r6s_A mol:protein length:325 Gab protein  ali model follow..  6  66...RVGKILDDLCANQLQPLLLKTLLNRAEGALLINAVGIDDVAQADEMVKLATAVAH---------------------------------LIGRSNFDAMSGQYYA-RFVVKNVDNSDSYLRQPHRVMELHNDGTYVE---------EITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYETSKGILSVPVPVGKFLLINNFWLHGRDRFTPHPDLRRELM........................................................................................... 308
56 -12.1002rg4_A mol:protein length:216 Uncharacterized protein  ali model follow..  11  19...................................LSEHGPALDPAEFAASCYSIAEDDDAGQEWCEREGYPGSYASLTDLPWRFPIFADL---VKSLDAHVAAFAEDGKALRLEDIWINILPEGGHGSHIHPHS----------------VISGTTYV-AMPEGTSALKLEDPRLP-RKGAREELRTFRSVAPKVGDVLLWESWLRHEVPMNMAEEDRISVSFNYAWGEG.................................................................................... 210
57 -12.1001jr7_A mol:protein length:311 HYPOTHETICAL 37.4 KDA PROTEIN IN ILEY-GABD INTERGENIC REGION  ali model follow..  6  52...RVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEMVKLATAVAH---------------------------------LIGRSNFDAMSGQYYA-RFVVKNVDNSDSYLRQPHRVMELHNDGTYVE---------EITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDNYETSKGILSVPVPVGKFLLINNFWLHGRDRFTPHPDLRRELM........................................................................................... 294
58 -12.0005apa_A mol:protein length:220 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE  ali model follow..  14  47.........................................ERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKF--ETTGCRRGQIKYSIMHPGTHVWP-HTGPT-------------NCRLRMHLGL--VIPKEGCKIRCANETK---------------TWEEGKVLIFDDSFEHEV----QDASSFRLIFIVDVWHPELTPQQR............................................................................. 208
59 -11.7002jij_A mol:protein length:233 PROLYL-4 HYDROXYLASE  ali model follow..  13  25................................AFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--------DSVISKIEKRVVTMIPLENHEGLQVLHYHDGQKYEP-HYDY-FHDPVNAGPEHGGQRVVTMLMYLTTV--EEGGETVLPNAEQKVTGDGWSEKRGLAVKPIKGDALMFDPASLHGSCP....................................................................................................... 205
60 -11.4002fd8_A mol:protein length:211 Alkylated DNA repair protein alkB  ali model follow..  14  1........................MQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLYLYSPIDPQTNKPWPAMPQSFHNLCQRAATFQPDACLINRYAPGAKLSL-HQDK------DEPDLRAPIVSVSL-----------GLPAIFQFGGL------KRNDPLKRLLLEHGDVVVWGGESYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKEN............................................................................. 207
61 -11.4004qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  15  4..................RGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFRETEKSRWSEASMAIMRRVQAAAFGPG----------QTLLSSVHVLDLEARGYIKP-HVD-------------SIKFCGATIAGLS-----------LLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSA-HEILRDEESPRGRRISVIC......................................................................................... 187
62 -11.2003khb_A mol:protein length:219 Alpha-ketoglutarate-dependent dioxygenase alkB  ali model follow..  16  2.........PHMLDLFADAEPWQEP----AAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLYLYSPIDPQTNKPWPAMPQSFHNLCQRAATFQPDACLINRYAPGAKLSL-HQDK------DEPDLRAPIVSVSL-----------GLPAIFQFGGL------KRNDPLKRLLLEHGDVVVWGGESYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE.............................................................................. 219
63 -11.2005xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed  ali model follow..  13  10.............................RPGMVLLKKFLKHDDQVDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCVFSKIVKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGL-HQDK-----------DETKPSLHKGLPVVSFS---GDTAEFLYGDV------NDVDKASKVDLESGDVLIFGGKSFHG--TDEAKLRPGRLNLTF......................................................................................... 228
64 -11.0001vrb_A mol:protein length:342 Putative asparaginyl hydroxylase  ali model follow..  8  5.KIMSAVTESVLESIISPVTMSEFLEEYWPVKPLVARGIPGFEKVRTLENVLAMVVGDAVIEESEGITDRFLVSPAEALEWYEKGAALEFDFTDLPQVRRWIEKLKAERLPAGTSSKAIVYAAKNGGGFKAHFDA--------------------NLIFQ-----------IQGEKTWKLAKNENVSNPMQVNLTPGTMLYLPRGLWHSTKSDQATGQPAWLDLMLAALRKKLISDNRFRE-HESSKSELNGYLESLI......................................................... 294
65 -11.0004o61_A mol:protein length:222 RNA demethylase ALKBH5  ali model follow..  9  1.................GQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEK--GLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKREWVHQLVIQKLVEHRVIFVNSAVINDYQPGGCIVS-HVDP-------IHIFERPIVSVSF-----------FSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYA-HC---RPQDIKERRAVIIL......................................................................................... 210
66 -10.9001e5r_A mol:protein length:290 PROLINE OXIDASE  ali model follow..  14  12...........................................DQTRLAPDLAYLAAVPTVEEEYDEFSNGFWKHVPLWNASGDSEDRTAHVEHVPYLKEIVTTVFDGT----HLQMARSRNLKNAIVIP-HRDFVELDREVDR-------YFRTFMVL---EDSPLAFHSNEDT---------------VIHMRPGEIWFLDAATVHSA--NFSEIS--RQSLCVDFAFD.................................................................................... 178
67 -10.9005iax_A mol:protein length:226 Procollagen-Proline Dioxygenase  ali model follow..  10  42................................IVVLGNVLSDEECDELIELSKSKLARSKVGSSRDVNDIRTSSGAFLDD--------------NELTAKIEKRIIMNVPASHGEGLHILNYEVDQQYKA-HYDY----FAEHSRSAANNRISTLVMYLNDV--EEGGETFFPKLN-------------LSVHPRKGMAVYFNELTLHGGAP....................................................................................................... 198
68 -10.6004nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase AlkB  ali model follow..  9  5.............................AAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLCLHQDKIHPDLRAPI--------VSVSLGLPAIFQFGGL------KRNDPLKRLLLEHGDVVVWGGESYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE.............................................................................. 205
69 -10.6004nhx_A mol:protein length:562 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1  ali model follow..  7  26ARVGKKGKKEVMAEFSDAVTEETLKKQVAEALHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLY-------KFQQSDDLKKRREPHISTLILFEDFRSWLSDISK--IDLESTIDMSCAKYEFTDALLCHDDE----------------RIAFILYLVP-RSMGGTLDLYS-----IDEHFQPKQIVKSLIPSWNKLVFFSPVSFHQ--SEVLSEEKSRLSISGWFHGPSLTRPPNYFEPPIPRSPHIPQDHEILYDW....................................................... 283
70 -10.5004npl_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  7  18..............................SG-IKQASIFTLEECARIEAKIDEV--VAKADKGLYREHTVDRAPLRNKYFFGEGYTYGAQLEKRGPVHELVIDRLVTHGVIFVNSAVINDYQPGGCIVS-HVD-------------PIHIFERPIVSVS------FSDSALCFGCKFLFKPIRVSEPVLHLPVRRGSVTVLSGYA-HC---RPQDIKERRAVIIL......................................................................................... 213
71 -10.3003uyj_A mol:protein length:248 Lysine-specific demethylase 8  ali model follow..  10  1GSHMGLKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVASLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWH........................................................................................................... 232
72 -10.2004p7w_A mol:protein length:292 L-proline cis-4-hydroxylase  ali model follow..  12  24...........................................DQRRLTDDLAVLAKSNFSSEYSDFACGRGKQEEQRVVVHETPALATPLGQSLPYLNELLDNHFDRD----IRYARIIRISENACIIP-HRDYLELE----------GKFIRVHLVL---DTNEKCSNTEENN---------------IFHMGRGEIWFLDASLPHSA--CFSPTP--RLHLVVDI....................................................................................... 183
73 -10.1002og5_A mol:protein length:357 Putative oxygenase  ali model follow..  13  77.................RRDLAGFRRDSGPDGAIVLRGL-----VDSMGLPPTPRVNGSVQREASLGAAVLLMTACGLGDPGAFLPEKNGALVQD------------------VPGMEEFQGNAGSTLLTFHNENAFHEHRPD---------FVMLLCLRA-DPTGRAGLRTACVRRVLPLLSDSTVDALTHRLLPGELAIVDNVTVHGRTEFTPRYDGTDRWLQRTFVLTDLRRSRAMRPADGYVLGAAPQ............................................................... 348
74 -9.9905jqy_A mol:protein length:429 Aspartyl/asparaginyl beta-hydroxylase  ali model follow..  14  262.........................................ERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEK-FPETTGCRRGQIKYSIMHPGTHVWP-HT---------------------------------GPTNCRLRMHLGLVIPKEGCKIRCANETEEGKVLIFDDSFEHEV----QDASSFRLIFIVDVWHPELTPQQR............................................................................. 423
75 -9.9002xdv_A mol:protein length:442 MYC-INDUCED NUCLEAR ANTIGEN  ali model follow..  11  13.....DSPSSLFESLISPIKTETFFKEFWEQKPLLIQSLFKLTDLKSLCSR--NVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRDELWRIQEKL--ECYFGSLVGSNVYITPAGSQGLPPHYDD--------------------VFILQ-----------LEGEKHWRLYHPTVPRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGI......................................................... 267
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.