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Query: 4yze_A mol:protein length:201 HTH-type transcriptional repressor NemR, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSMNKHTEHDTREHLLATGEQLSLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFSQHGTISGCLTVKLSAEVSDLSEDMRSAMDKGARGVIALLSQALENGRENHSLTFSGEPLQQAQVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAVLast
1 -92.3004yze_A mol:protein length:201 HTH-type transcriptional repressor NemR  ali model  100  1GSMNKHTEHDTREHLLATGEQLSLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFSQHGTISGCLTVKLSAEVSDLSEDMRSAMDKGARGVIALLSQALENGRENHSLTFSGEPLQQAQVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV 201
2 -83.6003bru_A mol:protein length:222 Regulatory protein, TetR family  ali model follow..  25  22.PRGAPDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLFREAQACGELSADHDPDALAEAFWIGWEGAILRAKLELRPDPLHSFTRTFGRHFVTRT. 220
3 -81.5003rd3_A mol:protein length:197 Probable transcriptional regulator  ali model follow..  42  1GSHMKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLA-PCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLE.... 196
4 -79.0003eup_A mol:protein length:204 Transcriptional regulator, TetR family  ali model follow..  19  2.AMKESKSDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACN-TYKEMLLVYSSMYNDADGSLFPVGGCPLLNTTIEADDTHDALRKKAGEAILSWKKNLVTIIKKGIQAKEFRPDTDVTKIAFSMIALVEGAILIHRATKNRAYSDYVFESLEDLIAGIEV 201
5 -77.9003qbm_A mol:protein length:199 TetR transcriptional regulator  ali model follow..  20  1...GMRKGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHK-HTVDTIIAFLDVFRSYAERPPLVGGCPILNTAIESDDTNPMLRERVRAVIDEWRETIRTLVQTGIARGEIRPEVDADRLALLIIATMEGAVMLARILETATPLEHAYTHLATYITQ... 194
6 -76.5003knw_A mol:protein length:212 Putative transcriptional regulator (TetR/AcrR family)  ali model follow..  38  5TTHQVKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTET-SARDKLMNYLQCWVKDATEQSWAESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALESTKMMLDGCN. 204
7 -73.4003on4_A mol:protein length:191 Transcriptional regulator, TetR family  ali model follow..  18  1SNAMPMNISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFFDAILTLTYNSE-NKMCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLETNGYDNE-----SSLSLAKQIISLVEGGLLLARLYGDETFLEGVRHFIDQTIK.... 191
8 -71.5002hyj_A mol:protein length:200 Putative tetR-family transcriptional regulator  ali model follow..  15  6...SAAEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEP-PGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVEQALFEIVAAGLALNAAMQLQHDRTAADRARRAIERALAQ... 199
9 -71.5002g7s_A mol:protein length:194 transcriptional regulator, TetR family  ali model follow..  16  2...SMKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNIS-DPLEQLRAYIGYWEGCIAD-ATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFGAITRPMLERITA... 194
10 -68.9001sgm_A mol:protein length:191 Putative HTH-type transcriptional regulator yxaF  ali model follow..  20  1....MTSRGDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNKEELAIEAVTYTGKIVEHLIQQSMDESS-DPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAEE-----EANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLVRK... 189
11 -68.1003dpj_A mol:protein length:194 Transcription regulator, TetR family  ali model follow..  18  2...NAMVQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTGD-SPRARIASFIDLMIMNRAKIT-RYGCPVGSLCTELSKLDHAAQGQANGLFTLFRDWLQRQFAEAGCTT------EAPALAMHLLARSQGAATLAQSFHDEGFLRSEVADMHRWLDN... 188
12 -59.2002fd5_A mol:protein length:180 transcriptional regulator  ali model follow..  22  2....SDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRALAAAFY-LSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLAESP-------------EETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN.... 180
13 -55.9001ui5_A mol:protein length:215 A-factor receptor homolog  ali model follow..  15  1..MARQRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKD-LDGRGYSSLEALMRLTFGMARLCV------QGPVLRAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRVVGGTLEPAGREPRRLAEMWYIL..... 188
14 -54.0002i10_A mol:protein length:202 Putative TetR transcriptional regulator  ali model follow..  16  4.PGGRRRGFD-DQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMVRP--TAHEAVLDFLTGRVEVFTAPGQPFGCMTVQAGLASGEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPAGTDCTALARYVMAAVYGLSVEAASGAPREELTAAAILAAQVVPRAQ. 199
15 -53.0003jsj_A mol:protein length:190 Putative TetR-family transcriptional regulator  ali model follow..  23  1.GMTTEVKQSPRERLLEAAAALTYRDGV-GIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGR-SPRERILYVFERVESQAGAPDF-QGCRYLAVQIELKDQAHPASRVAYQIKADLMAFFRSEAERGGAS-------DPDLLARQLILVFDGASARAGIGADNLTGLIVPTLTTLLDAA... 187
16 -52.6004uds_A mol:protein length:214 MBDR REGULATOR  ali model follow..  12  5.NKKEEQRKASTENILGCALDLFVKNGYRATTIDMIAARAGLTKGAIYFYFKTKDAIMLMLLEEAEKYIVDPIDEYMANAGPLADAKLVKFINMQALLGVTKPQH---LLILVSIDFSGTGDDIEKRAKAIYRRMYGHVEQLIAQGQTEGVFRSDSGSDELASIVMAAHDGVLIEWYRRPNELTGKTLTKALRSVL..... 198
17 -52.3002uxh_A mol:protein length:210 HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR  ali model follow..  15  2VRRTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLHETHDHLARASESEDEVDPLGCMRKLLLQVFNELVLDRTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDAERAAVAMFAYVDGLIRRWLLLPDSVDLLGDVEKWVDTG..... 198
18 -52.1003g7r_A mol:protein length:221 Putative transcriptional regulator  ali model follow..  16  20TEAAARTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSP-AADGQVRAVARSIVDGIRSPGF-RGCAFLNAVAEYPDPAHPVHRAVLAHRQWFLDTVTELLAQVGDG-------DGVAAGRHLVMLRDGAMAAGCLFDPELVSETFLHGVEGVLRDVS. 210
19 -52.1002w53_A mol:protein length:219 REPRESSOR  ali model follow..  18  2ARKTKEDTQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASANTRVLTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLGVLHGAMVEPELMDLKRDGMLALDMT..... 197
20 -51.7005xay_A mol:protein length:228 Gamma-butyrolactone receptor protein  ali model follow..  15  3....QERAAQTRRTIVAAAAAVFDELGYEATTIAEILKRSGVTKGALYFHFTSKEQLAQEVLTSQLRAVPPVEEQR---------LVLQQIIDETLLLAQLLSKGDPLVRGSVRLTVEPGAPRDGLDRRAPMQEWIGHGRDLLRRAEAGGELLPRLDVDAVARMLVGGFTGAQILSNILTGHADLLERVTDMHRHL..... 185
21 -51.4003vib_A mol:protein length:210 MtrR  ali model follow..  15  4...TKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALFQRICDDIENCIAQDAADAEGGSWTVFRHTLLHFFERLQSNDIHYKHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKETAVIFIKSTLDGLIWRWFSSGESFDLGKTAPRIIGIM..... 197
22 -50.9002qop_A mol:protein length:215 HTH-type transcriptional regulator acrR  ali model follow..  15  2ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRR--EIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAIL..... 198
23 -50.1003lhq_A mol:protein length:220 AcrAB operon repressor (TetR/AcrR family)  ali model follow..  14  5ARKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVTEERRR--EIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTIL..... 201
24 -49.4002wui_A mol:protein length:210 TRANSCRIPTIONAL REGULATOR  ali model follow..  14  2ARKTKEESQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFGQIEVPDENARVPALDILLRAGMGFLRQCCE---PGSVQRVLEILYLKCERSDENEPLLRRRELLEKQGQRFGLRQIRRAVERGELPARLDVELASIYLQSLWDGICGTLAWTERLNRAERMFRAGLDSLRSSP. 203
25 -48.6005daj_A mol:protein length:212 NalD  ali model follow..  16  4...TKEDSEKTRTAILLAAEELFLEKGVSHTSLEQIARAAGVTRGAVYWHFQNKAHLFNEMLNQVRLPPEQLTERLSGCDGSDPLRSLYDLCLEAVQSLLTQEKKRRILILMQRCEFTEELREAQERNNAFVQMFIELCEQLFARDECRVRLHPGMTPRIASRALHALILGLFNDWLRDPRLFDPDTDAEHLLEPM..... 197
26 -47.9004ac6_A mol:protein length:191 HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR  ali model follow..  13  1GHMVSVKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSE----------NGLVEVMRGMLEDPERYDW---MSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVLDGFISRLATGASTEGLSEVLDLVEGTVRKR.. 190
27 -47.5001rkt_A mol:protein length:205 protein yfiR  ali model follow..  12  4.KVTKEHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQ--SVWASISSYLDELTEGLRDVADTLAPVQFEYLVT-AWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATIAKFFLNMNDGIIQNALYFDEEKADVSGLAESAKLYLKTVL 200
28 -47.5001vi0_A mol:protein length:206 transcriptional regulator  ali model follow..  12  1..MSLKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDI-KEKATAKEKLALVISKHFSLLAGDH-----LAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELL..... 189
29 -46.9003kz9_A mol:protein length:206 SmcR  ali model follow..  11  9.PRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNI-DLDLHAKENIANITNAMIELVVQDN-----WLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPEDLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDML..... 198
30 -46.7006ayh_A mol:protein length:201 TetR family transcriptional regulator  ali model follow..  15  5.ENKLTEPLPTRMRILRAARQCFAENGFHSTSMKTICKASDMSPGTLYHHFPSKEALIEAIILEDQERALTHFREPL-----EGVGLVDYLVESTIAVTREDYAQRA-LVVEIMAE-GMRNPQVAEMLTNKYHTIIASLVARFNDAQAKGEIGADVDKEMAARLLLATTYGVLSDSSSAENARHATTLRTMLTGLLKCNS. 199
31 -46.3005l0x_A mol:protein length:223 Hemagglutinin/protease regulatory protein  ali model follow..  10  22RPRTRLSPQKRKLQLMEIALEVFAKRGIGRGDHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHI-DLDLDVKTNLQTLCKEMVKLAMTDC-----WLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCI... 214
32 -45.9005gpa_A mol:protein length:195 Transcriptional regulator (TetR/AcrR family)  ali model follow..  12  2....GKKKGPKYDQIIDAAVQVIAEHGYHQAQVSKIAKAAGVADGTIYLYFNNKEDVLISLFQEKMGRFVDKIRSQMNEAT-DVEEKLKILVNMHFKQLAADH-----LAIVTQLELRQSNTELALKINEVLKGYLNLLDELLMEGKEKGYFFQELDTRLARQMIFGTLDEVVTNWVMKDCKYDLTALVKPVHQLL..... 188
33 -45.9006ayi_A mol:protein length:199 HTH-type transcriptional regulator UidR  ali model follow..  14  5MDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERALARFREPI-----EGIHFVDYMVESIVSLTHEAFGQRA-LVVEIMAE-GMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLLDLTYGVLADIEAEDREASFAQGLRAMIGGILTAS. 199
34 -45.7002g3b_A mol:protein length:208 putative TetR-family transcriptional regulator  ali model follow..  18  2........SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEGSGD-SARDRLTRSLLGEIQ--DRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVEG--LSGRWLCKEISTEDARSHLLGAIDV... 186
35 -45.6003ang_C mol:protein length:204 Transcriptional repressor, TetR family  ali model follow..  16  1.AVREYQKKRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQLLAGLREEVRRLLAQGR-EPVEVLRHLFRVLAEGTAREK------LLLPMFYELLNPDPVRARAAFEALPLGDLIAEILKPLREQGVLRQDFSLERMGRTLADLYFLSALRWAAYTPGRDLAEELEKNLRLL..... 189
36 -45.4004gct_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  15  1..MAGNKKINRREEILQALAEMLENEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIF-DEEKDTLNRIRLVMQLLLAFAERNPGLTRILSGH---ALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALL..... 191
37 -45.4003br0_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  12  2.........NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAK-TNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLQNKYIDAYHVIFKEGNLNGEWSIN-DVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS. 187
38 -45.0001jt0_A mol:protein length:194 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5`REGION  ali model follow..  12  2.........NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAK-TNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSI-NDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS. 187
39 -44.9003crj_A mol:protein length:199 Transcription regulator  ali model follow..  13  5AGPSDRTFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDV---ETTDPEARLNLLLDELLVKPQENPDLSVALLEMRSQ--APYKEAFSDRFRQNDEYVRYMLKAVINHGIDEGVFT-DVDAEHVTRSLLTIIDGARTRAVMLDDTEELETARQTASEYADA... 196
40 -44.8003br3_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  12  2.........NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAK-TNREKFYLYNELSLTTQYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSIN-DVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLN.... 184
41 -44.7005vl9_A mol:protein length:192 Regulatory protein TetR  ali model follow..  15  1..MGYLNREERRETIMQAAMRVALDQGFTGMTVRNIATAAGVAAGQVHHHFTSSGELKSQAFIRVIREMMDLQRL---SRTAGWREQLFSALGSEDGRLEPY-----IRLWRQAQLLADSDPEIKSAYLLTMNLWHDEAVRIIRAGHAAGEFTLRDSAENIAWRLISLVCGLDGIYVLGMPEVDDAAFTRHLQHVIQL... 188
42 -44.2002f07_A mol:protein length:197 YvdT  ali model follow..  16  5....PKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDE-DFWTVLDILIDETFLITERHKDIIVLCYSGLAID------HSMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVENTAERFYIGFEQDNVEVYKKEIFTFL..... 190
43 -43.5005haw_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  15  2...EKQAKINRREEILQALAEMLENEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIFDEEK-DTLNRIRLVMQLLLAFAERNPGLTRILSGH---ALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALL..... 191
44 -43.2003geu_A mol:protein length:189 Intercellular adhesion protein R  ali model follow..  12  1.......SNAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQ-NKSNYSIDALYQFLFEFIFDIEER-------YIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKM--TKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYS... 181
45 -43.2003lwj_A mol:protein length:202 Putative TetR-family transcriptional regulator  ali model follow..  14  3PIPLEKQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLVEK-DLYERFIETKRLTMEVFAQNE------LSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFK-NVPVSPIAHSILAIEKFSLYKWVVLKTKEEMIEMVLSFHKTL..... 193
46 -43.1003s5r_A mol:protein length:216 Transcriptional regulator TetR family  ali model follow..  14  1GMQATMTDKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCETMLWLPSLWIREIVNEGGALREKM---LNNIPIDKMNKFSAKIAEGQKQGVINSGIDSRLLIGSIIGLTMLPLATAKLRDKGLSSEDIVCHVTALL..... 198
47 -43.0005eyr_A mol:protein length:228 EthR  ali model follow..  16  19RRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENADTDRENMWRTGINVFFETFGSHK------VTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSI 215
48 -43.0005d18_A mol:protein length:216 TetR family transcriptional regulator  ali model follow..  16  5AKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPT-WDEAHGPVEQRSERQLTELVSLQSQHP-----LFYLLSME-RSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEA... 201
49 -42.9006azh_A mol:protein length:192 TetR family transcriptional regulator  ali model follow..  13  1....SNAMNRTKKAIFEAAINVFATSGYNGSTVDEIASKANVAKGTLYYNFKSKEEIFNFVISKGLEIWHEKLTDIE-NLEDEPIEKLKKLFKMQFELLYENR------FFKMVMSQLWGKETRQDELRNKITEYIEGIERILKEAISKKQIR-ECDISLLAHSLFGSLISTSLYELSRDKEFNVNKVIDEITINI..... 185
50 -42.8002gfn_A mol:protein length:209 HTH-type transcriptional regulator pksA related protein  ali model follow..  13  1..VPKIDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAE--GAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLALQAILDPVVMKAISAEDAAARCVDA... 195
51 -42.5001zkg_A mol:protein length:212 transcriptional regulator, TetR family  ali model follow..  13  1..MGSDKVLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKRNRDIFDFMERWIEKKLEYSASHP------EADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSGFEEVELLKRDMNTLVEEVKVMLRIL..... 200
52 -42.5005hsz_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  13  2...KQTAKRNRREEILQSALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEK-DTTARLRLIVLLILGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLV..... 191
53 -42.4005k58_E mol:protein length:190 Nucleoid occlusion factor SlmA  ali model follow..  14  1........RNRREEILQSALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEK-DTTARLRLIVLLLLGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEAQLRQVMREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLI..... 185
54 -42.4003vuq_A mol:protein length:187 Transcriptional regulator (TetR/AcrR family)  ali model follow..  18  3ITPPGAGVKDKKRAILEATLAVLRERGLSGLKMEEVARRAEVGKGTIYLYFRDKRDLLKALVEERTWAFYREVEEVV-RRKAPFFVRLEEVLRRRLAWVQEWR---------WAAVAREAMDDPTPWLKGLHEHYLRLLEELLRSGQSEGAVRTGLSPRATAAVIAAMGCTPSLEVE-----AYLEHLMEVLRKGVEP... 187
55 -42.3003nrg_A mol:protein length:217 TetR family transcriptional regulator  ali model follow..  16  1.GMPTETPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRWLLDVGIQFQFHNP-----LAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE.............................. 170
56 -42.3003ppb_A mol:protein length:195 putative tetR family transcription regulator  ali model follow..  14  1.GMTASSKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASV-SSRGDLKQDAEQLWFAALTWAMANP------KQAFFQLYSMSPTVEQSVRDQAMHGILGFIAELIRQGQASGELA-EYPIELMQDNCHGQYLAATRYFVDHPERWQQAHERSASFALF..... 188
57 -42.2002zcm_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  13  2..........MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNH-DDNYSIDGLYQFLFKFIFDVDERY---------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIA--LDKEDFINMILMFLETWYFRASFSQKFGIIEDSKNRFKDQV..... 176
58 -42.1002zcn_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  13  2..........MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFLLRNH-DDNYSIDGLYQFLFKFIFDVDERY---------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIAL--DKEDFINLILLFLETWYFRASFSQKFGIIEDSKNRFKDQVYS... 178
59 -42.0003g1l_A mol:protein length:256 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHR  ali model follow..  16  29RRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENADTDRENMWRTGINVFFETFGSHK------VTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSI 225
60 -42.0003f0c_A mol:protein length:216 Transcriptional regulator  ali model follow..  14  2TDNKIKNEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKIL-NSGIDATALLKKYVKLRSLHFRHL------LSKLRSDFFHNTKPVFAKAFESFKQKEVEIVAGIIQYGITTKEFKR-GNKHENAEFLVHLLLGVRMVKLKYKDYEDLDKNMCKVAGMF..... 199
61 -41.7004gck_A mol:protein length:212 Nucleoid occlusion factor SlmA  ali model follow..  12  16AEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEK-DTTARLRLIVLLILGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEVQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKYRPTDDFEARWPLV..... 207
62 -41.7002gen_A mol:protein length:197 probable transcriptional regulator  ali model follow..  11  1...GHMGRSSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARAR-SAEETVRLLVTSYIDWVVANPDWARFI---LHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFR-EMPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVA..... 188
63 -41.6003nxc_A mol:protein length:212 HTH-type protein slmA  ali model follow..  14  16AEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEK-DTTARLRLIVLLLLGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYATDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLI..... 207
64 -41.2003he0_A mol:protein length:196 Transcriptional regulator, TetR family  ali model follow..  16  3.AMTDNPAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGV-NDDMPLKERYRTMWLNIWNLAGSNL------AISNRVQYDSLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVFK-PLDNEVLSGLSFEASVALAALGFYQLDDDALEAAIEASWDAIIK... 195
65 -41.2004mxm_A mol:protein length:203 Transcriptional regulator I2  ali model follow..  17  11DSGQLTDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASL-EEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG--DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLKS... 202
66 -40.9002ibd_A mol:protein length:204 Possible transcriptional regulator  ali model follow..  14  5PADDTSGKSGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIV-ASGLDSRATLEALVTTSYEAIDASHSAVAIYQDEVKH----VANERFTYLSELNTEFRELWMGVLEAGVKDGSFRSDIDVELAFRFLRDTAWVAVRWYRPGGSVTVDTVAKQYLSIVLDGLA. 200
67 -40.9002hyt_A mol:protein length:197 TetR-family transcriptional regulator  ali model follow..  16  3VRRTRAEMEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISDTAE-DDWEGFRCRCRAYLEMALEPEIQR----------LRDARAVLGGASPDSQRHCVESMQRLIDNLIRQGVVA-EADPQALASLIYGSLAEAAFWIAEGEDGNARLAQGVAALELL..... 188
68 -40.8004mo7_A mol:protein length:212 Transcriptional regulator I2  ali model follow..  17  20DSGQLTDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASL-EEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG--DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLKS... 211
69 -40.8005wm9_A mol:protein length:214 Rv0078  ali model follow..  18  6.RTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAASGATPADAIRAAVDAWLEVSGDPE------VRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLA-RQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRL..... 194
70 -40.8004w1u_A mol:protein length:204 HTH-type transcriptional repressor KstR2  ali model follow..  14  6.DRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIV-DSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQR----ASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAGQQYLAIVLGGITKEGV 204
71 -40.7003dew_A mol:protein length:206 Transcriptional regulator, TetR family  ali model follow..  18  2...NAMTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDD--IRGQAGDPLAVMTAYLRWTIQRHRNNPQL-------YTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNEGLTSHSPDQDEELIRQYVAIFTRGIMADG. 201
72 -40.7005icj_A mol:protein length:221 Probable transcriptional regulatory protein  ali model follow..  19  20.RTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAAGAATPADAIRAAVDAWLEVSGDPE------VRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLA-RQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRL..... 208
73 -40.6004me9_A mol:protein length:189 Transcriptional regulator, TetR family  ali model follow..  17  3.......AKNKQEDIFDAAMQLFAERGYDGTTIPMIAEKAKVGAGTIYRYFENKEALVNSLFSKSMLQLSEMIKTDF-PVEANIREQFSHTYNRLFEFARNNVDA-------LFTNSHCDSYFLDEQSKKIFDDFIGFFMNIIEDGIVKGLLR-PLPPVALIIIVYQPLEKLIATGQLEYSKELVKELEESSWNAIR.... 187
74 -40.6004ich_A mol:protein length:311 Transcriptional regulator  ali model follow..  14  108...AGEPQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIA-DARERLVRLVELQLPTPGLLRDEWSVWLQVWTE--STLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFR-DQDADELATRLSALIDGLGIQVLTGKRGCSVDHMRQHLNDFIEH... 298
75 -40.5005c4y_A mol:protein length:184 Putative transcription regulator Lmo0852  ali model follow..  15  2..........TKKLIKEVALTLFAEKGYDGTALSEIAKAVGIKTPSLYAHFASKEALFLEVYQDSIQMELTELGRVAEREDLVGEEKLQSIFFVATDFSSNPDEKK------FQRAVFYPPKSLFQELKEETKTYEQLTNRILRETLEKIVSEE--ALVRWMHVFYALLDG-LSVEHGIYDETEFELRRKSAWAVL..... 179
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.