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Query: 4z5s_A mol:protein length:231 Aldehyde decarbonylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAGVLast
1 -83.1004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model  100  1MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAGV 231
2 -81.1004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  72  1MPQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAAV 231
3 -75.2005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  73  1MQQLTDSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIG. 231
4 -73.8004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  65  19....SSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS. 244
5 -73.4005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  39  2.......TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAARM 225
6 -73.3005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  62  4..TAPSSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLAS. 231
7 -72.7004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  65  19....SSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS. 244
8 -68.5005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  69  27MPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA. 256
9 -67.1005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  70  27MPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAA. 256
10 -50.6004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  11  6.......RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED-VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK--NRMQGAINFWFPRAVEMLHMTWSLLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDK......... 226
11 -46.9005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  10  3.......KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVR-LPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-----VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI.................. 209
12 -44.9003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  11  20.......EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAMLQDAINRFWWPALMMFGPNDDNWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTE.... 252
13 -43.4004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  11  23.......EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAMLQDAINRFWWPALMMFGPNDDNWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPD.......... 249
14 -43.3004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  15  46IDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALAEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDEELFIRYMDELWPHVIGYVDYLTERTYALEIDYDLLRHYVIKQFNLRKKQISRTK.............. 295
15 -41.2003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  15  40IDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELSPAAQVRASVTYNHIVEGMALTGYYAWHKICVPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDAVFETRMNELIPLALRLIEEGFALYPPFDLSKDDFLQYSTDKGMRRFGTISNAR.............. 284
16 -39.9003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  10  1............MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLANIGLDLLGQARNFLSYAAELAGEGDEDTLARDERQFSNLLLVEQPNGNFAD-TIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNVSGQKMQQAINKLWRFTAELFDADEIDIALIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGL 229
17 -38.5002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  9  99FGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNLQKWIDHWEPQAYEALKPLAEAS-----VGIDGLNEARAELSARLKKFELQSRGVSA......... 333
18 -38.2004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  12  2...............NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLANIGLDLLGQARNFLSYAAELNGCGDEDTLGRDERQYSNLLLVEQPNGNFAD-TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGELSNRKMQQAVDNLWRFTGELFLADEVELSLIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQG. 226
19 -36.7001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  16  88..........NKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGYLFEYGSKNRWVSEDWGGIWIGRLGKYGVESPR............ 325
20 -35.6003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  12  73KAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDEL 327
21 -34.8001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  14  73KAALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKGNRNMATFGMMDENRHGQIQLYFPYANVKRSRK-TNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDET 327
22 -34.7001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  16  93..........VRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDSAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVVYEDWGGIWIGRLGKYGVESPR............ 330
23 -34.6003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  11  43VDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK.............. 275
24 -34.1003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  10  91..EHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVLQKYLNFHYSVTSDLYGAEISSNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSAL 356
25 -34.0001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  7  101FDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPAITNCATYETADHLRWLTHTAYRTRELANCYPDVENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGN--REVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL................ 330
26 -32.8002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  10  67IDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK.............. 298
27 -32.5002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  11  67VDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK.............. 299
28 -32.4002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  12  87..........NISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHM-SVPKSFFDDARSAGPFEFLTAISFSFEYVLTNLLSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKEVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHHL 331
29 -32.3003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  8  98FDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPAISNCCILQTADSLRWLTHTAYRTHELSLTYPDAEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENNHAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQ--YLERSTSLRASILTV.................. 327
30 -31.6002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  11  50VDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFFSIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK.............. 282
31 -31.3001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  8  53........DWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRA---EKYTQVETLVYMAFYERCGAVFCRNLAAQIEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLYRDKLQNVADAGIFGKPQLRQLISDR---ITAWGLAG---EPSLKQFVTG. 275
32 -30.8004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  11  31IAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEP.............. 272
33 -30.4006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  16  49VDFTADTQDFHALSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRV-TKSQDNRKYMVSLILFSILIENVAILLSFTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPV.............. 290
34 -30.2002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  58INMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERN-PTPKTFLESIVYDVILEGLNFYFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWKIPGINPEDMETYISFIANKRAVQLGMEK.............. 300
35 -30.2003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  13  36VPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENKAQIIQQHYRGDDPLKKKIASVFLESFLFYPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISEELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEP.............. 269
36 -29.8001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  11  36VPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEE-KAQIILAHYVSDEPLKKKIASVFLESFLFLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSEELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEA.............. 269
37 -29.8001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  13  41VPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDSEENRNLQRKAEIVLQSYRGDEPLKRKVASTLLESFLFLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEA.............. 274
38 -29.7001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  12  46IPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPTMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEE-KAKIIMSYYNGDDPLKKKVASTLLESFLFYPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEG.............. 279
39 -29.7004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  16  6.KEPIHVVNIGEANPRFAQLLLEQFGG-ATGELSAALQYWVQSFHVAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKS-SQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSDEGTKQTLVHLLTREISHTQMFMKALDSLGKL...................................................................... 180
40 -29.7002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  11  74IVPFAEHPLFLAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMH-PLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISERLVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARTIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFSALLLELNAAGIRGAERLVRDFSGARKMVEQLGLDAVDFDFPERPDWSP. 341
41 -29.6002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  11  68IDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKEIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK.............. 299
42 -29.6003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  11  69VDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADRKSTFGERVVAFAAVEGVFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK.............. 301
43 -29.5004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  35IPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNKAEIINEIYLNGTALEKKIASVFLETFLFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDP.............. 268
44 -29.4004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  14  82..........DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYGILGLRASMFIDYVQHIADRRLERIGLKP.............. 321
45 -29.0006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  12  62IPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEAHEWVIN-RAKALIPYYVNDDPLKSKVAAALMPGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLLYELIDLEKAYLK-FGLADDAIRFSVYNAGKFLQNLGYDS.............. 295
46 -29.0001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  10  62IELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAANDDSLYAERLVAFAAKEGIFASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEK.............. 293
47 -29.0006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  11  66IPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQILTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHEWVVD-RPKALIPFYTADDPLKSKIAAALMPGFLLLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYES.............. 299
48 -28.7002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  13  23.................IKKLVDKLVKATAAEFTTYYYYTILRMHLEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKD-PKEILKVLLEAEQCAIRTWKEVCDMTDPRTYDLAQRILQEEIEHEAWFLELLYGR......................................................................... 170
49 -28.4002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  13  20...................SLEELLGMAIKAEIGAREFYKSLAEKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE..................................................................... 165
50 -28.3001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  19  1.........MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCDIVTARLFERIIEEEQAHLTYYENIGSHI......................................................................... 146
51 -28.1001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  10  108VDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF-IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQVREIITNAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFNK.............. 340
52 -28.1002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  15  5..............SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIP-------------LRVKQAEDVREMLEYARQSEYETIKRYEKRKEQAMTELVVKLEDMIADETNHMEELDRLLNDK......................................................................... 144
53 -28.1001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  12  53VDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL.............. 323
54 -27.7002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  13  4..................YTLAEFLAHAIALETEAAERYVELADMMLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSDPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS..................................................................... 153
55 -27.2005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  9  43MIPFRGHPIWERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIG-QQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFVAPDSIVAFEGVPGWEHLVQDHSGIHTLLTEMDV................ 295
56 -27.1001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  12  53VDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRYCSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL.............. 323
57 -27.1004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  14  3..........GSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKANDIAALFRSTAEGETGHAHGHLEYLEAVGDPA-----------------TGLPFGTSRQNLQSAIAGETHEYTDMYPGMAKTAFEEIANWFETLAKAERSHANRYTKALDGL......................................................................... 142
58 -27.1001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  17  1............MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLNSDAQKTVKKIIDQEKEHLRKLLEMKRES......................................................................... 150
59 -27.0001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  12  53VDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL.............. 323
60 -27.0001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  13  53VDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL.............. 323
61 -27.0001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  11  127IDLSKDIHDWNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKADADALFGERLVAFASIEGVFFSIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKK.............. 360
62 -26.9003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  15  9.............TARYNRFVADLFGMMAYGELSAFERFSADARYSPTLRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAM--LPFQAAVDYFHSRTRPADWYESLMKA-YVIDTVSADFYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPSRLALWGRRLLGEALTQAQRVSYEHAFLG-LVSGLIAGLAEKHSKRMTQLGLTG.............. 225
63 -26.3002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  15  10............QGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK------LARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTDYTTCDIAKHILAEEEEHEQDLQDYLTDIARMKESFLKK............................................................... 170
64 -26.2001jku_A mol:protein length:266 pseudocatalase  ali model follow..  11  5TRKLQYNAKPDRSDPIMARRLQESLG--QWGETTGMMSYLSQGWASEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGI................................................................... 198
65 -26.2002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  17  1..........ASGSMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM......................................................................... 145
66 -26.1003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  15  2...............QGDAKVIEYLNAALRSELTAVSQYWLHYRLQGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCDYPSKMLFEELIADEEGHIDYLETQIDLM......................................................................... 141
67 -26.0003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  16  1............MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM......................................................................... 143
68 -25.9003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  17  2...............QGDPDVLKLLNEQLTSELTAINQYFLHSKMQTELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCDATSARLLEQILADEETHIDYLETQLQLM......................................................................... 141
69 -25.9005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  18  2...............QGDPEVIEFLNEQLTAELTAINQYFLHAKLQTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMDITSANVFEAILADEEHHIDYLETQLDLI......................................................................... 141
70 -25.6003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  16  17...............KGEPKVIERLNEALFLELGAVNQYWLHYRLLTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP------------LRIGQNVKEVLEADLKGEYDARASYKESREICDYVSKQLFDELLADEEGHIDFLETQLDLL......................................................................... 156
71 -25.6001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  16  2...............KGDAKVIEFLNAALRSELTAISQYWVHFRLQAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP------------LRIGEGPRETLECDLAGEHDALKLYREARDYCDIVSKNIFESLITDEEGHVDFLETQISLY......................................................................... 141
72 -25.4003sid_A mol:protein length:180 Symerythrin  ali model follow..  21  24..................NNTDANAASSIEVEYECDCMYPTFAEIAPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA--STIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLANMEVATAFEAIVKSETKHANWVKRALENLLEVA..................................................................... 180
73 -25.3004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  18  2...............KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP------------LRIGQTVKEVLESDLAAEREARALYQEGAAYADFPSKNLFEELMGDEEHHIDFLETQLDLV......................................................................... 141
74 -25.1005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  17  2...............KGDKTVIQFLNKQLTNELTAINQYFLHARMLDKLGKHEYEESIGEMKHADRLIARIFMLDGLPNLQDLHK------------LLIGEDVPELLACDLKLEQAAHATVREAIAHCDYVSRDLFQDILDDTEEHIDYLETQIDLI......................................................................... 141
75 -25.0004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  50IALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVADGHQRKAVLNFMMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKA-DDEISLFKAMVASVYLESFLFYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDP.............. 290
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.