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Query: 5Z0M Entity 1(prereleased), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWFRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDALELast
1 -123.0005Z0M Entity 1(prereleased)  ali  100  1MTVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWFRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDALE 275
2 -122.0001wx2_A mol:protein length:281 tyrosinase  ali model follow..  99  1MTVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWHRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDALE 275
3 -94.9003nm8_A mol:protein length:303 Tyrosinase  ali model follow..  40  5YRVRKNVLHLTDTEKRDFVRTVLILKEKGIYDRYIAWHGAAFHTPPGSDRNAAHMSSAFLPWHREYLLRFERDLQSINPEVTLPYWEWETDAQMQSQIWSADFMGGNGNIKDFIVDTGPFAAGRWTTID-EQGNPSGGLKRNFGKEAPTLPTRDDVLNALKITQYDTPPWDMTSQNSFRNQLEINGPQLHNRVHRWVGGQMGVVTAPNDPVFFLHHANVDRIWAVWQIIHRNQNYQPMKNGPFGQNFRDPMYPW-NTTPEDVMNHRLGYVYDIE. 289
4 -77.4004j3p_A mol:protein length:383 Catechol oxidase  ali model follow..  24  52LRVRRDWRAFSKTQKKDYINSVLCLQKLPRYDDFVATHINQ--------TQIIHYTGTFLAWHRYFIYEFEQALRDCSYTGDYPYWNWGADADNMSQVFDGSETSMSGNGGGGCVTSGPFKDYKLNLGPNPLTYNPRCMKRSLTTEILQRYNTFPKIVELILDSDDIWDFQMTMQGVPGS----GSIGVHGGGHYSMGGDPDVYVSPGDTAFWLHHGMIDRVWWIWQNLDLRKRQNAISGASPNTTLDTVIDLGGPIAMRDLMSTTFCYVY.... 382
5 -76.4001lnl_A mol:protein length:408 hemocyanin  ali model follow..  21  4NLVRKSVRNLSPAERASLVAALKSLQEDSSFQSLASFHAQPPLAANKAFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWD---DALFHANFTNPFNGADIDFQKIARDINVDKLAKEGPKGYDTW-SFKQYIYALEQEDYCDFEVQF--------------EIAHNAIHAWVGGTEHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFEHSKPEDTFDYKFHYEYDHLE 289
6 -73.3004yd9_B mol:protein length:920 hemocyanin  ali model follow..  21  503NRIRRNINSLESRDVQNLMSALKRLKEDEGFQTIAGYHGSLPTPEAPEYACCLHGMPTFMHWHRVYLLHFEESMRRHGASVAVPYWDWTMPSDNPSLLGDADYYDA----WTDSVIENPFLRGHIKYEDTYTVREIQPELFALAEGQKESTLFKDVMLMFEQEDYCDFEVQA--------------EVIHNSIHYLIGGHQSLMFSSFDPIFYVHHSMVDRLWAIWQELQKHRKLPHDKAYCALDQMAFPMKPFAVSTPSKLFDYKLGYDYDHLN 782
7 -71.9002p3x_A mol:protein length:339 Polyphenol oxidase, chloroplast  ali model follow..  19  45MRTRPAAHLVSKEYLAKYKKAIELQKALPSFKQQANVHCTYCQVGYTDLELQVHASWLFLPFHRYYLYFNERILAKLDPTFALPYWAWDNPDGMYMPTIYASSPSSLYDEKPPTVIDLDYDGTEPTIPDDELKTDNLAIMYKQIVSGATTPKLFLGYPYRAGDAID-------------PGAGTLEHAPHNIVHKWTGLADNFYTAGRDPIFFGHHANVDRMWNIWKTIGGKNRKDFTDTDWLDATFVDENKQLVKVKVSDCVDTSLRYQYQDIP 334
8 -71.8005m8l_A mol:protein length:446 5,6-dihydroxyindole-2-carboxylic acid oxidase  ali model follow..  26  103LIVRRNLLDLSKEEKNHFVRALDMAKRTTIYNYFVWTHYYSVKQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLENSTEDGPIRRNPAGNVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTYDPAVRSLHNLAHLFLNGTGGTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTPLENAPIGHNRQYNMVPFPPVTNTEMFVTALGYTYEIQ. 443
9 -70.5005ce9_A mol:protein length:339 Polyphenol oxidase  ali model follow..  17  45LRVRPAAHLVDNDYIAKYNKGIELMKSLPSFTQQANVHCAYCQVGFPDLSLQIHECWLFFPFHRYYVYFFEKILGKLDPTFALPFWNWDSPPGMQLPSLYAVSNSAIYDPQPPTIIDLDYGETSESTTTTDQVPSNLKIMYRQMVSGAKNPTLFFGSPYRAGDEPD-------------PGAGTIESTPHNNIHLWTGDDTNFYSAGRDPIFFAHHSNVDRMWTIWKTLGGKRKDITDPDNSSFFFYDENADPV-RVKVKDCVDNTLRYVYQDVE 334
10 -69.8001bt1_A mol:protein length:345 PROTEIN (CATECHOL OXIDASE)  ali model follow..  20  46MKVRPAAHTMDKDAIAKFAKAVELMKALPNFYQQALVHCAYCQVNFPDQEIQVHNSWLFFPFHRWYLYFYERILGKLDPSFGLPFWNWDNPGGMVLPDFLNDSTSSLYDSNPPVVVDLGYNGADTDVTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRAGDAPS-------------PGAGSIETSPHIPIHRWVGDPRNFYSAGRDIAFYCHHSNVDRMWTIWQQLAGKPRKRDYTDSDWLNATFLFYDE-VKVRIGDSLDNQMGYKYAKTP 337
11 -69.6001js8_A mol:protein length:394 Hemocyanin  ali model follow..  18  1AIIRKNVNSLTPSDIKELRDAMAKVQADTGYQKIASYHGIPLSCNGTAYACCQHGMVTFPNWHRLLTKQMEDALVAKGSHVGIPYWDWTTTFANLPVLVTEEKDNSFHHAHIDVANTDTTRSPRAQL-------------FDDPDKGDKSFFYRQIALALEQTDFCDFEIQF--------------EIGHNAIHSWVGGSSTLHYTSYDPLFYLHHSNTDRIWSVWQALQKYRGLPYNTANCEINKLVKPLKPFAHSTGATSFDYHLGYDYDNLN 271
12 -68.7004yd9_C mol:protein length:394 hemocyanin  ali model follow..  18  2.MVRKNVNSLTPSEIENLRNALAAVQADKGYQKIASFHGMPLSCDGTAFACCQHGMVTFPHWHRLYMKQMEDALKAKGAKIGIPYWDWTTAFHSLPILVTEP-------------KNNPFHHGYIDVADTKTTRDPRPQLFDDPEQGDQSFFYRQIAFALEQRDFCDFEIQF--------------EMGHNAIHSWVGGPSTLHYTSYDPLFYVHHSNTDRIWAIWQALQKYRGLPYNSANCEINKLKKPMMPFSSSTGYKSFDYQLNYEYDNLN 271
13 -68.2004z12_A mol:protein length:520 Aurone synthase  ali model follow..  17  54VRMRWPAHKGTKKQVDDYRRAIAAMRALPSFVSQAKIHYTQVDSGFPDIDIQIHNSWLFFPFHRWYLYFYERILGSLEPNFALPYWKWDEPKGMPISNIFLGDASNDANHIEDRIVDLDYDGKDKDIPDQQQVAC---------NLSTVYRDLVRNGVDPTSFFGGKYVAGDSPVANGDPSVGSVEAGSHTAVHRWVGDPTNFYSAGYDPVFYIHHANVDRMWKLWKELRLPGHVDITDPDNASYVFYDENKDLVRVYNKDCVNLDLKYNFIENS 351
14 -68.2004bed_A mol:protein length:1664 HEMOCYANIN KLH1  ali model follow..  21  836RLIRKNVDRLSPEEMNELRKALALLKEDKSFQQLGAFHGEPSPEASKKFACCVHGMSVFPHWHRLLTVQSENALRRHGYDGALPYWDWTSPLNHLPELAEKYVDPEDGVEKHNPWFDGHIDTVDKTT-------TRSVQNKLFEQPEFGHYTSIAKQVLLALEQDNFCDFEIQYEI------------AHNYIHALVGGAQSLRYTAFDPLFYLHHSNTDRIWAIWQALQKYRGKPYNVANCAVTSMREPLQPFGHSVPFNVFDYNFNYEYDTLE 1120
15 -66.3003j32_A mol:protein length:3303 Hemocyanin isoform 1  ali model follow..  22  2NVVRKDVSHLTVDEVQALHGALHDVTASTGFEDITSYHAAPCDYKGRKIACCVHGMPSFPFWHRAYVVQAERALLSQRKTVGMPYWDWTETLTQLPALVTEPIFSLGGKTQPNYWHRGEIAFANKATAR----AVDDRLFEKVETG-HYTKLMESVLDALERDEFCKFEIQF--------------ELAHNAIHYLVGGKYNLDYTAYDPIFFLHHSNVDRIFAIWQRLQELRGKNPKAIDCAHELARQELEPFQHSRPVDLFDYHLGYSYDSLN 281
16 -64.0005m6b_B mol:protein length:574 Polyphenol oxidase 4  ali model follow..  16  22VKNRLDIVDFVRDEKTLYVRALQAIQDKDSFFQLSGIHPKDTPTVPYESGYCTHSQVLFPTWHRVYVSIYEQVLQEAAEDLRQPYWDTGFALVPPDEIIKLEQVKITNYDGTKITVRNPILRYSFHPIDPSFNGYPNFDTWRTTVRNPDADKKENIPALIAKLDLEADSTRESNHGEFDDTHANSLEAVHDDIHGFVGGHMTHAFAAFDPIFWLHHSNVDRHLSLWQALYPGVWVTQGPEPGTELNKDSALEPFYEWTSVPLTDTLLNYSYPDFD 365
17 -63.9004oua_B mol:protein length:557 latent form of PPO4 Tyrosinase  ali model follow..  15  12VKNRLDIVDFVRDEKTLYIRALQAIQDKDSFFQLSGIHPKDTPTVPYESGYCTHSQVLFPTWHRVYVSIYEQILQEAAEDLRQPYWDTGFALVPPDEIIKLEQVKITNYDGTKITVRNPILRYSFHPIDPSFNGYPNFDTWKTTVRNPDADKKENIPALIGKLDLEADSTRESNHGEFDDTHANSLEAVHDDIHGFVGGHMTHAFAAFDPIFWLHHSNVDRHLSLWQALYPGVWVTQGPEPGTELNKDSALEPFYEWTSVPLTDTLLNYSYPDFD 355
18 -63.0004yd9_A mol:protein length:2000 hemocyanin  ali model follow..  21  422LRFRKDISSLTTEEEYELRVAMERFMSDKSYQALAEFHGLPRPDALNRVACCIHGMATFPHWHRLVVMQFENALFTRGSPIGVPYWDWTKPFTALPSLLADETYPYTKETKPNPFFKAPIEFLKAGVHT------SRQIDERLFKQPSKGDHGFLYDGLLAFEQDDFCDFEVQFEV------------THNSIHAWTGGSESLHYTSFDPMFWLHHSQVDRLWAIWQALQIQRGKPYKTYCANSEAFKSPLNNDEHSVPTDVYDYQLAYTYDTLF 707
19 -62.9002y9w_A mol:protein length:391 POLYPHENOL OXIDASE  ali model follow..  17  16IKNRLNILDFVKNDKTLYVRALQVLQARDSFFQLGGIHKAQPQLHLYKANYCTHGTVLFPTWHRAYESTWEQTLWEAAKDLRQPFWDWGYWPNDPDQVIRDKQVEITDYNGTKIEVENPILHYKFHPIEPTFEGDFAQWQTTMRYPDVQKQENKAAAPGFREWTFNMLTKNYTWELFSNHGAANSLEMVHNTVHFLIGRDPSVPHAAFDPIFWMHHCNVDRLLALWQTMNYDVYVSEGMNPGQVLTEDSPLEPFYTWQSDDLEDWELGFSYPDFD 368
20 -56.4004bed_B mol:protein length:1734 HEMOCYANIN KLH1  ali model follow..  21  838HGVRKEINTLTTAEVDNLKDAMRAVMADHGYQAIAAFHGNPPMPDGKNYSCCTHGMATFPHWHRLYTKQMEDALTAHGARVGLPYWDGTTAFTALPT-------------FVTDEEDNPFHHGHIDYLGVDT--TRSPRDKLFNDPERGSESFFYRQVLLALEQTDFCQFEVQFEI------------THNAIHSWTGGLTTLEYTTYDPLFWLHHANTDRIWAIWQALQEYRGLPYDHANCEIQAMKRPLRPFSNAKPTDVFEYSFNFQYDNLR 1108
21 -50.5003w6q_A mol:protein length:620 tyrosinase  ali model follow..  19  20LPIRKDIDDWYLEQTSAFVEALTVIQNRPSYFRLAGIHGAPWTEWDGVPGGQVHNNYTFPTWHRVYVTLYEQVIYEAMLDFILPYWDFARFARHGHDNTRPYAITSQKTEEHGWSFDLPFDKCQSTTKYGLLENYNADVWADGGQNWLRTTGGLNWGEFSSTRYDDKKEETQPKNNEQAPKNWMNLEAIHNNVHNWVGGHMSSVVAAYDPIFWLHHCNIDRLTAIWQTVNSGSWFNDDKSKVSKDDDLRPFHRFCEFRSDDVKDWRLNYDYAITK 443
22 -19.8006eys_B mol:protein length:536 PvdP  ali model follow..  8  207.ASRDKWHRLSEKQRNALRGV-----------GWQPGPLDRERDARGPRKDRNASGIDFFFMHRHMLHTARSMQDLPSWERLPRPVVPLE------------------------DRPGFIRYFDNPDGFSVPPAWVAVDDDEYSEWLHGLKSAEAYHANFLVWESQYQDPAYLAKLTLGQFGSELELGMHDWLHMRWADFLDPFSSHVNPVFWSFHGWIDDRIEDWYRAHE............................................ 433
23 -14.5005yy2_A mol:protein length:749 Uncharacterized protein AsqI  ali model follow..  12  159.......DTLHGHALLSYWRDDYDLND--SHYYWHMVYRGAGGDNSKNVGDFDRHGEVFLYVHSQMVARYESLCWSLPLVRPWNQYDDFLENGYAPISSLIEHYGGYPPFSTWYSIRNPRARLEEWRDNIYAAIRKGQFETTSKDKPLVLTRDNCLNFVGGILDAQYPSLNKLLGGCSLDEERY--GNLHNYGLGKFAGLTINFGAPRDPCFWRWYKHLQYYGRLAATRYPQDITAHRAEVVLSNLVVRLQDRSSPHYLDGHITTFL-YEWN... 464
24 -11.8004yzw_A mol:protein length:720 AGAP004976-PA  ali model follow..  11  211.......TDAEPEQRMAFFREDIGVNL------HWHWHLVYPASGPPDVVRKDRRGELFYYMHQQLLARYDRYAQGLGRIEPLANLREPVREAYYPKLLRTSNNRTFCPRYPGMTISDVARSADRLEVRIADIES----PRVLEAIDAGFAVSDDGVRVPLDETRGIDVLGNILERSAISINRNLYGDVHNMGHVLLAFIHDPATAMRDPIFYRWHKFIDNIFLRNKARLAP------------YTMAELSNSNVTLEALETQLDRAGGAVNSFV 475
25 -11.7003wky_A mol:protein length:687 Prophenoloxidase b  ali model follow..  10  178.......SSRSPEHRVSYWREDMNLNS--------HWHWHLSNPYYIEPGDRDRRGELFYYMHHNLVARYERLSLNLKPVKAFEDWRIPVQDGYFPHLTTGNGQEWSSRQDSTFFQDIREIPLVDSNYVSQLEMWRTHLYHGIDVGYLIHENGSYVRLTDNPEVGEDYGINGEALEAGDSVNPDVYGNIHNLGHDFLGQSHDVETAVRDPVFFRWHKFIDNVFHRYKLTQPPYTPRQLSGNITVLNVT--VQEEHWIDDYVSPENLLHTFFTPKT 454
26 -11.1003hhs_A mol:protein length:694 Phenoloxidase subunit 2  ali model follow..  12  193.......TDLEEEHRLAYWREDLGINL-----HHWHWHLVYFSASDEKIVAKDRRGELFFYMHQQIIARYERLCNSLKRVKKFSDWREPIPEAYYPKLDSLTSARGWPPRQAGMWQDLKRPVDGLNVTIDDMERYRRNIEEAIATGNVILPDKSTKKLDIDM-------LGNMMEASVLSPNRDLYGSIHNNMHSFSAGVIAEATTMRDPFFYRVHAWVDDIFQSFKEAPHNVRPYSRSQ-------------NPGVQVTSVAVESAGGQQNVLN 455
27 -10.3001ll1_A mol:protein length:628 METCYANIN II  ali model follow..  9  152.......NILDPEYRLAYYREDVGINA---HHWHWHLVYPSTWNPKYFGKKKDRKGELFYYMHQQMCARYERLSNGMHRMLPFNNFDEPLAGYAPHLTHVASGKYYSPRPDGLKLRD---------LGDIEISEMVRMRERILDSIHLGYVISEDGSHKTLDELHGTDILGALVESSYESVNHEYYGNLHNWGHVTMARIHDPSTSLRDPIFYNWHRFIDNIFHEYKNTLKPYDHDVLN--------------FPDIQVQDVTLHARVDNVVHTF 409
28 -9.0703wjm_B mol:protein length:696 Silkworm storage protein  ali model follow..  9  214.......TYPNNEDRIAYLTEDVGLNA---YYYYFHSHLPFWWNSGKYGAFKERRGEIYFFFYQQLLARYYME-RLTNGLGKIPEFSWYSPLRTGYLPPFNSFYYPFAQRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAFDKKIDLHSSKAVNFVGNY----WQTNADLFEEDFLQFYQRSYEVNARRVLGSALDYQTSARDPAFYQLYKRIVQYIIEFKQYQVPYTQEALH--------------FVGLKISDVKVDKMVTFFDHFD 473
29 -9.0603ixv_A mol:protein length:626 Hemocyanin AA6 chain  ali model follow..  10  142VEAEETGNILDPEYKLSYFREDIGINA---HHWHWHIVYPATWNPTVMGKEKDRKGELFFYMHQQMCARYERLSNGLQRMIPFHNFDEPLEGYAPHLTSLVSGLQYASRPEGYSIHDLSDVDVQ---------DMVRWRERILDAINMHYIVDKDNNKIPLDIEHGTDILGDIIESSDESKNVEYYGSLHNWGHVMMANITDPSTSLRDPIFYRWHRFIDNIFQEHKKSFHPYTKEELSFPGVEVV---------GVSINSKTANVITTLIKESL 411
30 -9.0003hhs_B mol:protein length:684 Phenoloxidase subunit 1  ali model follow..  9  187.......NTTEPEQRVAYFREDIGINL-----HHWHWHLVYFDSADRSIVNKDRRGELFYYMHQQIIGRYERMCNGLPQVKPFSDFSAPIEEGFPKLDSQVASRTWPPRFAGSVFRNLDRTVDQVKIDVRKLFTWRDQFLEAIQKMAIKMPNGRELP---LDEVTGIDMLGNLMESSIISPNRGYYGDLHNMGHVFAAYTHDPATAMRDPFFYRWHRFVDDVFNIYKEKLTPYTNERLDFPGVRVS---------SVGIEGARPNTLRTLWQQST 455
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.