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Query: 5Z4P Entity 6(prereleased), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLADTGQKTSQPTSIFIKLLast
1 -126.0005Z4P Entity 6(prereleased)  ali  100  1MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLADTGQKTSQPTSIFIKL 378
2 -126.0005jcb_F mol:protein length:388 Tubulin-Tyrosine Ligase  ali model follow..  100  1MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLADTGQKTSQPTSIFIKL 378
3 -121.0003tig_A mol:protein length:380 Ttl protein  ali model follow..  79  5.YTFVVRDENSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYAELCKGIVDLAISSVFPLNEENHKPTEDNVFIKL. 380
4 -80.6004ylr_A mol:protein length:487 Tubulin polyglutamylase TTLL7  ali model follow..  21  7..KGTITANVAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKI--SELQNYQRINHFPGMGEICRKDFLARNMTKMIKS------RPLDYTFVPRTWIFPAE-----------------YTQFQNYVKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKL-----PSQDHLIVQEYIEKPFLME--GYKFDLRIYILVTSPLKIFLYHDGLVRMGTEKYNESNLTQLYMHLTNYSVNKHNEHFERDETEGSKRSIKWFTEFLQANQHDV--AKFWSDISELVVKTLIVAEPHVLHAYRMCVCFEVLGFDILLDRKLKPWLLQINRAPSFGQKIDYDVKRGVLLNALKLLNIRTSDKRRNLAKQKA.... 363
5 -71.9005vlq_A mol:protein length:589 LOC100158544 protein  ali model follow..  21  107.................NGDPDGTCDLMSRLLRNEDPNFFWTTKRDAVDC---RFLKKDQMLNHYAKAGSFTTKVGLCLNLRNLHWFDDA-----DPDSFFPRCYRLGAEDEKIEHSEYYVDQCSEVLHKLEAVNPQLDIEGGRNIWIVKPGAKSRGRGIICMDRLEEILKLVDCKDGKWVVQKYIERPLLIF--GTKFDVRQWFLVTDPLTIWFYKECYVRFSSQPFSLENL-DTSIHLCNNSIQKHYENSQSRHPTDNMWSSRQLQVHLHKLGAPHAEAVIVPGMKAAIIHAMQSAQDIVEYRK---SSFELYGADFMFGENFHPWLIQINASPTMSTTVTSRLCAEVQEDTLRIVL---DRKLDRNCDIGAFELI 580
6 -16.5002p0a_A mol:protein length:344 Synapsin-3  ali model follow..  12  173...................................................................................................................................................VVKLGHAHAGMGKIKVENFQDITSVVAMAKTYATTEAFIDS---------KYDIRIQKIGSNYKAY------MRTSISGNWK-----------ANTG-----------------------------SAMLEQVAMTERYRLWVDSCSEMFGG------------LDICAVKAVHSKDGRDYIIEVMDSSPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLR..... 335
7 -16.5001auv_A mol:protein length:311 SYNAPSIN IA  ali model follow..  11  158...................................................................................................................................................VVKMGHAHSGMGKVKVDNFQDIASVVALTKTYATTEPFIDA---------KYDVRIQKIGQNYKAY------MRTSVSGNWK-----------TNTG-----------------------------SAMLEQIAMSDRYKLWVDTCSEIFGG------------LDICAVEALHGKDGRDHIIEVVGSSMLIGDHQDEDKQLIVELVVNKMAQALPR.............. 311
8 -16.2003t54_A mol:protein length:334 Inositol Pyrophosphate Kinase  ali model follow..  83......................................................KLRNPFVINDLNMQYLIQDRREVYSILQAE----------------LPRYAILNRDPNNPKECNLIEG----------EDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLRKTGSYIYEEFMPTD----------DVKVYTV---------------------------GPDYAH----AEARKSPALDGKVERD-------------EGKEVRYPVILNAREKLIAWKVCLAFK------------QTVCGFDLLRANG-QSYVCDVNGFSFVKMKYYDDCAKILGNIVMREL.................... 318
9 -16.2002qb5_A mol:protein length:347 Inositol-tetrakisphosphate 1-kinase  ali model follow..  10  100.............................................................LDPLPAIRTLLDRSKSYELIRKIE---------------MEDDRICSPPFMELTSLCGD------------DTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQ--EGLNAIQPPCVVQNFINHN---------VLYKVFVVGESYTVV-------QRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTE---------------LDKIEGVFERPSDEVIRELSRALRQALG------------VSLFGIDIIINNQ-QHAVIDINAFPGYEG------VSEFFTDLLNHIATVLQGQSTAMAATG..... 337
10 -16.0001pk8_A mol:protein length:422 rat synapsin I  ali model follow..  10  268...................................................................................................................................................VVKMGHAHSGMGKVKVDNFQDIASVVALTKTYATAEPFIDA---------KYDVRVQKIGQNYKAY------MRTSVSGNWK-----------TNTG-----------------------------SAMLEQIAMSDRYKLWVDTCSEIFGG------------LDICAVEALHGKDGRDHIIEVVGSSPLIGDHQDEDKQLIVELVVNKMTQALPRQ............. 422
11 -15.8003vpb_A mol:protein length:282 Putative acetylornithine deacetylase  ali model follow..  15  125...................................................................................................................................................IDKPPIGSWGRLVSLIRDVFEGKTIIESALKAHIVQEYIQYK----------DIRCIAIGEELLG------CYARNIPPNEWRANV---------------------------------------ALGGTPSNIEVDEKLKETVVKAVSIVH------------GEFVSIDILEHPNKGYVVNELNDVPGFMVATNINVAQKLVEYIKENY.................... 280
12 -15.8001i7l_A mol:protein length:309 SYNAPSIN II  ali model follow..  13  156...................................................................................................................................................VVKIGHAHSGMGKVKVENFQDIASVVALTQTYATAEPFIDA---------KYDIRVQKIGNNYKAY------MRTSISGNWK-----------TNTG-----------------------------SAMLEQIAMSDRYKLWVDACSEMFGG------------LDICAVKAVHGKDGKDYIFEVMDCSPLIGEHQVEDRQLITDLVISKMNQLLSR.............. 309
13 -15.7005k2m_A mol:protein length:273 RimK-related lysine biosynthesis protein  ali model follow..  16  120...................................................................................................................................................VSKPVFGSWGRLLAKVNDRDSLEAVLEHRYGIHYFQEFVEKP--------GRDIRSYVIGGEFV-------------------------------GAIYRYSNHWITNTARGGKAEPCSD-----------------PEVEELSVKAWEAFG------------EGALAIDIFESEK-GLLVNEVNPNMEAARVTGADMAGKLVEYAVEVA.................... 271
14 -15.5003vpd_A mol:protein length:281 Ribosomal protein S6 modification protein  ali model follow..  16  127...................................................................................................................................................VLKPVIGSWGRLLAKVTDRAAAEALLEHQHQLFYIQEYVEKP--------GRDIRVFVVGERAI-------------------------------AAIYRRSAHWITNTARGGQAENCPLTE----------------EIARLSVGAAEAVG------------GGVVAVDLFESER-GLLVNEVNHTMESVHTTGVDIPGEILRYAWEVA.................... 279
15 -15.0001uc8_A mol:protein length:280 lysine biosynthesis enzyme  ali model follow..  17  127...................................................................................................................................................VLKPVIGSWGRLLAXXXXXXXXXXXXXXQHQLFYIQEYVEKP--------GRDIRVFVVGERAIA-------------------------------AIYRRSAHWITNTARGGQAENCPLT----------------EEVARLSVKAAEAVG------------GGVVAVDLFESER-GLLVNEVNHTMESVHTTGVDIPGEILKYAWSLA.................... 279
16 -14.5004iwx_A mol:protein length:320 Ribosomal protein S6 modification protein  ali model follow..  18  153...................................................................................................................................................VVKLVEGTQGIGVVLAETRQAAESVIDGLNAHILVQEYIKEA-------QGCDIRCLVVGDEVV-------AIERRAKEGDFRSNL---------------------------------------HRGGAASVASITPQEREIAIKAARTMA------------LDVAGVDILRANR-GPLVMEVNASPGL-EGIEKTTGIDIAGKMIRWIERHATTEYCLKT........ 312
17 -14.5005zct_A mol:protein length:306 Ribosomal protein S6--L-glutamate ligase  ali model follow..  18  139...................................................................................................................................................VVKLVEGTQGIGVVLAETRQAAESVIDGLNAHILVQEYIKEA-------QGCDIRCLVVGDEVV-------AIERRAKEGDFRSNL---------------------------------------HRGGAASVASITPQEREIAIKAARTMA------------LDVAGVDILRANR-GPLVMEVNASPGL-EGIEKTTGIDIAGKMIRWIERHATTEYCLKTGGG..... 301
18 -14.1005i47_A mol:protein length:277 RimK domain protein ATP-grasp  ali model follow..  130...................................................................................................................................................VLKSLTVDPGFPVALVEDQDAAEAIVEGGERAVLVQQFIPA-------RAGQSVRLVVAGRSLAG-------------------------------IEQRTHGGWRPGRDATYE-----------------AYTGDPAPLTALAERIIERLG------------TGTYAVEVVETGD-GPVVVGVANLVDFRSGRGVDVAGMIADFVLG...................... 277
19 -13.8001z2n_X mol:protein length:324 inositol 1,3,4-trisphosphate 5/6-kinase  ali model follow..  11  87.............................................................LESSAIHDMMSSREEINALLIKN----------------IPNSFSVKSK---------------------EEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEG-IDDIHFPCLCQHYINHNNKI--------VKVFCI------------GNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALG--------VQLCGIDFIKENE-NPLVVDVNVFPSYGG...................................... 303
20 -13.4002r7k_A mol:protein length:361 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5`-monophosphate synthetase  ali model follow..  10  154...................................................................................................................................................IVKFPGARGGRGYFIASSTEEFYKKAEEDIANAHIEEYVV--------GTNFCIHYFY-LKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIP-------------------------VVIRESLLPQVFEMGDKLVAKAKELVPPG--------MIGLQSLCNENLELVVFEMSAR-SMGQRIAREIKMALQLDMIDKII................... 360
21 -13.0002r84_A mol:protein length:334 PurP protein PF1517  ali model follow..  130...................................................................................................................................................IVKPHGAKGGKGYFLAKDPEDFWRKAEEDLKNIQIQEYVL--------GVPVYPHYFY-VREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIP-------------------------IVLRESLLMDVIEAGERVVKAAEELMGGLW-------PFCLEGVFTPDLEFVVFEISAR-STGRRIAMEIREAIENDMLEKVL................... 333
22 -12.2002pbz_A mol:protein length:320 Hypothetical protein  ali model follow..  129...................................................................................................................................................FVRIEGPRGGSGHFIVEGSELEERLSTLEEP-YRVERFIP--------GVYLYVHFFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAI--------------------------------ALRESLLPQLYDYGLAFVRTMRELEPP-----GVIGPFALHFAYDGSFK--AIGIASR-SMGRRIARELRLAEEEDRLEEVV................... 311
23 -11.2004c5a_A mol:protein length:330 D-ALANINE--D-ALANINE LIGASE  ali model follow..  15  160...................................................................................................................................................IVKPSREGSSVGMSKVVAENALQDALRQHDEEVLIEKWLS--------GPEFTVAILGEEILPSIRIQPSGTFY-----DYEAKYLSDETQYFCPAGLE----------------------------------ASQEANLQALVLKAWTTL-----------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSPMAARQAGMSFSQLVVRILELAD............... 324
24 -11.2003v4z_A mol:protein length:309 D-alanine--D-alanine ligase  ali model follow..  17  145...................................................................................................................................................IVKPSHEGSSVGMSKVDHASELQKALVQHDSDVLIEKWLS--------GPEFTVAILGDEVLPSIRIQPPGVFY-----DYDAKYLSDKTQYFCPSGLS----------------------------------DESEQQLAALALQAYHAL-----------DCSGWGRVDVMQDRDGHFYLLEVNTSPGMTSPMAARQYGLSFSQLVARILMLAD............... 309
25 -11.1001gsa_A mol:protein length:316 GLUTATHIONE SYNTHETASE  ali model follow..  17  158...................................................................................................................................................ILKPLDGMGGASIFRVKEGDPNLGVIEHGTRYCMAQNYLPA--------KDGDKRVLVVDGEPVPYCLAR---------------IPQGGETRGNLA-----------------------------AGGRGEPRPLTESDWKIARQIGPTLKEK----------LIFVGLDIIGDRLTE---INVTSPTCIRE-IEAEFPVSITGMLMDAIEARLQQQ............. 316
26 -11.1003ln7_A mol:protein length:757 Glutathione biosynthesis bifunctional protein gshAB  ali model follow..  11  529...................................................................................................................................................VIKPKSTNYGLGITIFEDFAKALEIAFREDKEVMVEDYLVGT----------EYRFFVLVLLRVPANVVGDSVHSVAEKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMG------------AAVCGVDLIIPDLKQPAVIEANFNPMMMMHIFPYASRRLTQNVIKMLFPELE............... 757
27 -10.9002pvp_A mol:protein length:367 D-alanine-D-alanine ligase  ali model follow..  15  183...................................................................................................................................................IVKPSNAGSSLGVNVVKEEKELIYALDEYSKEVLIEPFIQG-----------EYNLAGCKIKKDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKASLS----------------------------------NALEEQLKENFKKLYSDL-----------FDGAIIRCDFFVIEN-EVYLNEINPIPGSLANYLFDDFKTTLENLAQSLPKTPKIQIKNSYL....... 354
28 -10.9004fu0_A mol:protein length:357 D-alanine--D-alanine ligase 7  ali model follow..  11  181...................................................................................................................................................FIKPVRAGSSFGITKVIEKQELDAAIEEHDTEVIVEETING-----------EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPARID----------------------------------AEAEKRIQEAAVTIYKAL-----------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTS---SQMLDKLIGLYVE...................... 349
29 -10.8003k3p_A mol:protein length:383 D-alanine--D-alanine ligase  ali model follow..  18  199...................................................................................................................................................FVKPANMGSSVGISKAENRTDLKQAIAKYDSRVLIEQGVDA-----------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAEID----------------------------------PVIVEKMRDYAATAFRTL-----------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQPLLWENMGLSYSVLIEELVSLAKEMFDKRES....... 374
30 -10.8003ln6_A mol:protein length:750 Glutathione biosynthesis bifunctional protein gshAB  ali model follow..  14  524...................................................................................................................................................VVKPKSTNFGLGISIFASYEKAIDIAFTEDSAILVEEYIEGT----------EYRFFVLVLLRVAANVVGDGVKLKNQNPLRGYDHRSPLEVIEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMG------------AWVCGVDLIIPNATQAYCIELNFNPLMYMHTYCQEGQSITPRILAKLFP.................. 748
31 -10.8005d8d_A mol:protein length:308 D-alanine--D-alanine ligase  ali model follow..  16  138...................................................................................................................................................IIKPVHEGSSVGMSKVEKAEDFAAAIEQHDAVVMAEKWIT--------GREFTISFLLQPPADVAFYDYEAKYQRNDVEYGIPCGLSE----------------------------------------------TEEKKLQALCLRAFQAV-----------GAEGWGRIDAMQDEQGNFWLLEVNTVPGMTSH--DELCVAILEQTLE...................... 305
32 -10.8004egq_A mol:protein length:316 D-alanine--D-alanine ligase  ali model follow..  12  150...................................................................................................................................................FVKPASEGSSVAVEKVKSADALPAALEKHDKIVIVEKSIEGGGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDA----------------------------------------------AKEAEFKRIARRAFDVL-----------GCTDWGRADFMLDAAGNPYFLEVNTAPGMTDH--SELVVKVLSLTLD...................... 316
33 -10.7003df7_A mol:protein length:305 Putative ATP-grasp superfamily protein  ali model follow..  13  124......................................................................................................................................VPQTSLRPLDCKFIIKPRTACAGEGIGFSDEVPD----------GHIAQEFIE--------GINLSVSLAV--------------------------GEDVKCLSVNEQIINN---------------------RYAGAVVPARISDEVKREVVEEAVRAVECVEGLNG----------YVGVDIVYSDQ--PYVIEIN--ARLTTPFSRAYGASVADLLAGGEVKHVRRQMVRKSKSAEKPYV 292
34 -10.7002i87_A mol:protein length:364 D-alanine-D-alanine ligase  ali model follow..  16  175...................................................................................................................................................FVKPANLGSSVGISKCNNEAELKEGIKQFDRKLVIEQGVNA-----------EIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPADLD----------------------------------EDVQLTLRNMALEAFKAT-----------DCSGLVRADFFVTEDNQIYINETNAMPGFTASMYPKL-PELITKLIELAKERHQDKQKNKYK....... 354
35 -10.7003n8d_A mol:protein length:364 D-alanine--D-alanine ligase  ali model follow..  16  175...................................................................................................................................................FVKPANLGSSVGISKCNNEAELKEGIKQFDRKLVIEQGVNA-----------EIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLKIPADLD----------------------------------EDVQLTLRNMALEAFKET-----------DCSGLVRADFFVTEDNQIYINETNAMPGFTASMYPKL-PELITKLIELAKERHQDKQKNKYK....... 354
36 -10.6004eg0_A mol:protein length:317 D-alanine--D-alanine ligase  ali model follow..  13  150...................................................................................................................................................FVKPASEGSSVAVLKVKTADALPAALSTHDKIVIVEKSIEGGGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLPA----------------------------------------------EQETELKRIARRAFDVL-----------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDH--SELVVKVLSLTLN...................... 316
37 -10.6004egj_A mol:protein length:334 D-alanine--D-alanine ligase  ali model follow..  12  161...................................................................................................................................................FVKPASEGSSVAVIKVKSADALPAALIKFDRIVVVEKSIEGGGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLTA----------------------------------------------DEEARLKVLARRAFDVL-----------GCTDWGRADFMLDADGNPYFLEVNTAPGMTDH--QELVVAVLALTLK...................... 327
38 -10.5003se7_A mol:protein length:346 VanA  ali model follow..  11  169...................................................................................................................................................FVKPARSGSSFGVSKVAREEDLQGAVEEYDSKVLIEEAVIGTEIVMGNGPELITGEVDQITLSHGFFKIHQ--------ESTPESGSDNSAVTVPADIS----------------------------------TTSRSLVQDTAKAVYRAL-----------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSPRMMTAAGLSRADVIDRLVSLALAGKSR.......... 346
39 -10.3001glv_A mol:protein length:303 GLUTATHIONE SYNTHASE  ali model follow..  18  152.............................................................................................................................................EKHSDIILKPLDGMGGASIFRVKEGDPNLGVIEHGTRYCMAQNYLPA--------KDGDKRVLVVDGEPVPYCLARGG----GGEPRPLTESDWKIARQIGPTLKEKG--------------------------------------------------------------LIFVGLDIIGDRLTE---INVTSPTCIRE-IEAEFPVSITGMLMDAIEARLQQQ............. 303
40 -10.3001e4e_A mol:protein length:343 VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA  ali model follow..  11  169...................................................................................................................................................FVKPARSGSSFGVKKVNSADELDYAIEQYDSKILIEQAVSGCEVVLGNSAALVVGEVDQIRLQYGIFRIHQ--------EVEPEKGSENAVITVPADLS----------------------------------AEERGRIQETVKKIYKTL-----------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTS---PELIDRLIVLALK...................... 342
41 -10.1003q1k_A mol:protein length:367 D-alanine--D-alanine ligase A  ali model follow..  12  186...................................................................................................................................................FVKPANQGSSVGVSKVANEAQYQQAVAEFDHKVVVEQGIKG-----------EIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPA---------------------------------QIPSEVNDKIRAIAIQAYQTL-----------GCAGMARVDVFLTADNEVVINEINTLPGFTNSMYPKL-TDLISRLIELALERHTANNALKTT....... 366
42 -10.1003r23_A mol:protein length:307 D-alanine--D-alanine ligase  ali model follow..  15  137...................................................................................................................................................VVKPNSGGSSVGVKIVYDKDELISMLEEWDSEVVIEKYIK--------GEEITCSI-----------------------------FDGKQLPIISIRHAAEFFDYNAKYDDASTIEEVI-----------ELPAELKERVNKASLACYKAL-----------KCSVYARVDMMVKDG-IPYVMEVNTLPGMTQPKSADAAGIHYSKLLDMIIETSLRVRKEEG........ 306
43 -10.1006dgi_A mol:protein length:337 D-alanine--D-alanine ligase  ali model follow..  10  162...................................................................................................................................................FVKAARQGSSVGCYKVTTEDQIAPAIEGFSEQVLVEQAVK--------PRELEVSAYLYISKPGEVIAPEGTFYSYEE-KYSANSHARTVLEAENLT------------------------------------EKHKELIQTYAERVFIHM-----------KLRHLSRIDFFLTQEGQIYLNEVNTFPGMTPI--SEFLVQCVTNTLV...................... 334
44 -10.0003tqt_A mol:protein length:372 D-alanine--D-alanine ligase  ali model follow..  15  184...................................................................................................................................................FVKAVSLGSSVATLPVKTETEFTKAVKRYDDRLMVEPRIRG-----------EIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSV---------------------------------DLSESVTKQIQQIAIDAFKMV-----------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNSMYPKMWENLLDQLIELAIDRHQEQQKLIRC....... 364
45 -10.0002fb9_A mol:protein length:322 D-alanine:D-alanine ligase  ali model follow..  13  154...................................................................................................................................................FVKPANTGSSVGISRVERFQDLEAALARYDEKAVVEKALSPV----------ELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLD----------------------------------PGTQETVQELALKAYKVL-----------GVRGMARVDFFLAEG-ELYLNELNTIPGFTP---PELLRRLVELALT...................... 322
46 -9.9103e5n_A mol:protein length:386 D-alanine-D-alanine ligase A  ali model follow..  11  195...................................................................................................................................................FVKPANQGSSVGVSQVRTADAFAAALAAYDHKVLVEAAVAG-----------EIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPA---------------------------------DIDAQTQQRIQQIAVQAYQAL-----------GCAGMARVDVFLCADGRIVINEVNTLPGFTRSVYPKL-RGLITRLIELALERHTDDQLLRSA....... 375
47 -9.5601ehi_A mol:protein length:377 D-ALANINE:D-LACTATE LIGASE  ali model follow..  13  178...................................................................................................................................................FVKAANQGSSVGISRVTNAEEYTEALSQYDYKVLIEEAVNGA----------ELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFV-----------------DNSAVHFQIPA-----------QLSPEVTKEVKQMALDAYKVL-----------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNSLFKRL-AKLVDMLIDYGFEDFAQNKKLSYS....... 364
48 -9.0503lwb_A mol:protein length:373 D-alanine--D-alanine ligase  ali model follow..  11  192...................................................................................................................................................FVKPARGGSSIGVSRVSSWDQLPAAVARHDPKVIVEAAIS--------GRELECGV------------------------------------LEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAI---RQLAIRAFAAIDCRGLARVDFFLTDD-GPVINEINTMPGFTTSMYPRM-PTLLATMIETTLARGVGLH............ 373

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.