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Query: 5bs7_E mol:protein length:115 Protein SPT2 homolog, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GPQRLPFPTGYKRQREYEEEDDDDDEYDSEMEDFIEDEGEPQEEISKHIREIFGYDRKKYKDESDYALRYMESSWKEQQKEEAKSLRLGMQEDLEEMRREEEEMQRRRAKKLKRRLast
1 -61.3005bs7_E mol:protein length:115 Protein SPT2 homolog  ali model  100  1GPQRLPFPTGYKRQREYEEEDDDDDEYDSEMEDFIEDEGEPQEEISKHIREIFGYDRKKYKDESDYALRYMESSWKEQQKEEAKSLRLGMQEDLEEMRREEEEMQRRRAKKLKRR 115
2 -10.4006cmo_R mol:protein length:463 chimera protein of Soluble cytochrome b562 and Rhodopsin  ali model follow..  5  3................................DYKDDDD-------AKLQTMENLYFQGGTADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPD 78
3 -8.1003cnf_A mol:protein length:1333 VP1  ali model follow..  13  3.......STNNNSNKRNNEEKHKQPEIDSSANNGEGTSGTRAQTVGDTATEAGVRNETEAGASTRRQTDGTGLSGTNAKIATASSARQADVEKPADVTFTIENVDDVGIMQQKKP 110
4 -8.0202ykf_A mol:protein length:305 PROBABLE SENSOR HISTIDINE KINASE PDTAS  ali model follow..  12  226....................................SDPFEAHEVDEHVQDLLAGDGKGMRMEVDAGGATVLLRTLPLVVAGRNVGAAILIRDVTEVKRRDRALISKDATIRE.. 302
5 -7.9106g18_t mol:protein length:475 Protein LTV1 homolog  ali model follow..  19  424...............................................................................KEDKRARKQAIKEERKERRVEKKANKLKLEKRRQEK 461
6 -7.2005mfd_B mol:protein length:109 Capsid decoration protein,pD_(KR)5  ali model follow..  14  75.................................................................................SDETKKRTAFAGTAISIVGSGSPKRKRKRKRKRE 108
7 -6.9506c1q_B mol:protein length:422 Soluble cytochrome b562, C5a anaphylatoxin chemotactic receptor 1 chimera  ali model follow..  7  1...............................................................DYKDDDDVDADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKA 52
8 -6.8206gmh_M mol:protein length:1726 Transcription elongation factor SPT6,Transcription elongation factor SPT6,Transcription elongation factor SPT6  ali model follow..  12  29..VTKKFVEEEDDDEEEEEENLDDQDEQGNLKGFINDDDDEDEGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDFD-EENLGVKVKRGQKYRRVKKMSDDEDDDEEEYGKEE 142
9 -6.7405t94_B mol:protein length:542 Importin subunit alpha  ali model follow..  15  1......................................................................MDNGTDSSTSKFVPEYRRTNFKSADELRRRRDTQQVELRKAKRDE 50
10 -6.7205sum_A mol:protein length:468 Ribosome biogenesis protein NSA1  ali model follow..  12  393.........................................DIKTNKMLVKVYVGSRINFIVMLDDVEIEMPLSPSAKAAKGKQKRKVTELEEDADELWNKLEGKVAASKASKKS 466
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.