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Query: 5c5t_A mol:protein length:228 Prolyl 4-hydroxylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMEGFETSDRPGVCDGKYYEKIDGFLSDIECDVLINAAIKKGLIKSEVGGATENDPIKLDPKSRNSEQTWFMPGEHEVIDKIQKKTREFLNSKKHCIDKYNFEDVQVARYKPGQYYYHHYDGDDCDDACPKDQRLATLMVYLKAPEEGGGGETDFPTLKTKIKPKKGTSIFFWVADPVTRKLYKETLHAGLPVKSGEKIIANQWIRAVKLast
1 -119.0005c5t_A mol:protein length:228 Prolyl 4-hydroxylase  ali model  100  1MGSSSSGLVPRGSHMEGFETSDRPGVCDGKYYEKIDGFLSDIECDVLINAAIKKGLIKSEVGGATENDPIKLDPKSRNSEQTWFMPGEHEVIDKIQKKTREFLNSKKHCIDKYNFEDVQVARYKPGQYYYHHYDGDDCDDACPKDQRLATLMVYLKAPEEGGGGETDFPTLKTKIKPKKGTSIFFWVADPVTRKLYKETLHAGLPVKSGEKIIANQWIRAVK 222
2 -93.6002jij_A mol:protein length:233 PROLYL-4 HYDROXYLASE  ali model follow..  28  1...MMVGF----GELKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVV---DNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTM-----IPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNEHGGQRVVTMLMYLTTVEEGG--ETVLPNAGLAVKPIKGDALMFYSLKP-DGSNDPASLHGSCPTLKGDKWSATKWIHVAP 222
3 -92.4005iax_A mol:protein length:226 Procollagen-Proline Dioxygenase  ali model follow..  27  11.NKEQTIFHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRDV-------NDIRTSSGAFL--DDNELTAKIEKRISSIMN-----VPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGG--ETFFPKLNLSVHPRKGMAVYFEYFYQ-DQSLNELTLHGGAPVTKGEKWIATQWVRRGT 215
4 -55.4003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  16  1.................MGSDKIENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPV-AVALGQQIMDRLLAHPQFVSA-----ALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYQSIKLSAGSLVLYPS----------SSLHQVTPVLSGERTAAFMWLQSM. 190
5 -38.0006ax6_A mol:protein length:235 Procollagen lysyl hydroxylase and glycosyltransferase  ali model follow..  11  42................HLQNFKDFDYTEICNDVYSFPLFTPAFCKEVIEVMDKANLWSKGGDSYFDPRIGGVESYPTQDTQLYEVGLDKQWHYVVFNYVAPFVRHLYNNYKTKDINLAFVVKYDMQSELAPHHD--------SSTYTLNIALNEYGKEYTAG--GCEFIRHKIWQGQKVGYATIH--------AGKLLAYHRALPITSGKRYILVSFVN... 229
6 -34.0004iw3_A mol:protein length:229 Putative uncharacterized protein  ali model follow..  18  39................................SQQAHFLPADLVRALAAECRRRDAEGELNPAGVRGATQEVRETIRGDQIQWIDPGQAEACDQYLAAMDQLRLAINQGLFLGLEDECHFALYPPGAFYRRHLDRFRDD-----DRRMVSAVLYLNE-PHDGGQLRMFLADGHDVEPVAGCLVVFLS---------GEVPHEVLPAGR-ERLSLTGWFRRRG 219
7 -32.8002g19_A mol:protein length:244 Egl nine homolog 1  ali model follow..  17  29................................CVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVD------NPNGDGRCVTCIYYLNDAKVSGGILRIFPEGKADIEPKFDRLLFFWS--------DRRNPHEVQPAYA-TRYAITVWYFDAD 215
8 -32.4004kbz_A mol:protein length:238 Egl nine homolog 1  ali model follow..  17  27................................CVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVD------NPNGDGRCVTCIYYLNDAKVSGGILRIFPEGKADIEPKFDRLLFFWS--------DRRNPHEVQPAYA-TRYAITVWYFDAD 213
9 -32.0005v1b_A mol:protein length:240 Egl nine homolog 2  ali model follow..  13  29................................CVVDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEGALMAHVDAVIRHCAGRLGSYKINGRTKAMVACYPGNGLGYVRHVD------NPHGDGRCITCIYYLNQ-VKVHGGLLQIFPEGANIEPLFDRLLIFWS--------DRRNPHEVKPAYA-TRYAITVWYFDAD 215
10 -31.9002hbt_A mol:protein length:247 Egl nine homolog 1  ali model follow..  16  14......................VPCMNKHGIC-VVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVD------NPNGDGRCVTCIYYLNDAKVSGGILRIFPEGKADIEPKFDRLLFFWS--------DRRNPHEVQPAYA-TRYAITVWYFDAD 209
11 -31.6002y33_A mol:protein length:252 EGL NINE HOMOLOG 1  ali model follow..  17  34................................CVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGD------GRCVTCIYYLNDAKVSGGILRIFPEGKADIEPKFDRLLFFWS--------DRRNPHEVQPAYA-TRYAITVWYFDAD 220
12 -31.4005lbc_A mol:protein length:252 Egl nine homolog 1  ali model follow..  16  34................................CVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEGLLMSSMDDLVLHCNGKLGSYKVNGRTKAMVACYPGNGTGYVRHVD------NPNGDGRCVTCIYYLNDAKVSGGILRIFPEGKADIEPKFDRLLFFWS--------DRRNPHEVQPAYA-TRYAITVWYFDAD 220
13 -31.3005l9v_A mol:protein length:252 Egl nine homolog 1  ali model follow..  17  34................................CVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEGLLMSSMDDLICHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVD------NCNGDGRCVTCIYYLNDAKVSGGILRIFPEGKADIEPKFDRLLFFWS--------DRRNPHEVQPAYA-TRYAITVWYFDAD 220
14 -29.2006ey1_A mol:protein length:257 HIF prolyl hydroxylase  ali model follow..  15  57................................CIINNFLGSSCSTEVLQQVLNLYQSGVFSNGQLARNVSV--NRIRGDKIAWIGGDEKYLSSCVDSLISRCNGRLGNYMITGRTKCMVACYPGSGLGYIRHID------NPNRDGRCVTVLYYLNNSQDCGGQLWLYPNNEVKIDPIFDRLLLFWS--------DRRNPHEVKPAYA-MRYAITLWYFDEK 241
15 -21.4004nhk_A mol:protein length:647 PKHD-type hydroxylase TPA1  ali model follow..  11  21.DKIKGMFNPKIWDKTFQDGLKKEIEDSQPYWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLANLSGLDWDDLSRLPN-YSKQYRDFFGYVTKAGKLSGSKT---DMSINTYTKGCHLLTHDDVIGSRRI-----SFILYLPDPDR-SHYGGGLRLFPDPSAKLVPQFNQIAFF-------KVLPGFSFHDVEEVKVDHRLSIQGWYHIPQ 246
16 -21.2004nhx_A mol:protein length:562 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1  ali model follow..  11  65....................HEVIVMDMDPFHCVIPNFIQSQD---FLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILFEDFRSWLSDISK-----IDLESTIDMSCAKYEFTDALLCHDDEL--------EGRRIAFILYLVP-RSMGGTLDLYSQIVKSLIPSWNKLVFF--------EVSPVSFHQVSEVLSESRLSISGWFHGPS 255
17 -21.1005iqs_A mol:protein length:315 WelO5  ali model follow..  9  45..................TAIQDIIINRSFDGMIIRGVFPRDTMEQVARCLEEQIYGHAIVGQSPDLKDYFASSAIFRQACRTMFQGSPDFEEQVESIFHSLSGLPVEIPTGPEGQTYTIRLLLEGREIAVHVGNDFLLMPAAN-SDQLSYFIPLTVPEAGGE--VVYSL-SVAYAPGPGDMLLFNG---------GRYYHRVSEVIGNPRRTIGGFLAFSK 299
18 -20.9003mgu_A mol:protein length:644 PKHD-type hydroxylase TPA1  ali model follow..  11  24.DKIKGMFNPKIWDKTFQDGLKKEIEDSQPYWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLANLSGLDWDDLSRLPN-YSKQYRDFFGYVTKAGKLSGSKT---DMSINTYTKGCHLLTHDDVIGSRRI-----SFILYLPDPDR-SHYGGGLRLFPDPSAKLVPQFNQIAFF-------KVLPGFSFHDVEEVKVDHRLSIQGWYHIPQ 249
19 -20.6003kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1  ali model follow..  11  5.DKIKGMFNPKIWDKTFQDGLKKEIEDSQPYWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLANLSGLDWDDLSRLPN-YSKQYRDFFGYVTKAGKLSGSKT---DMSINTYTKGCHLLTHDDVIGSRRI-----SFILYLPDPDR-SHYGGGLRLFPDPSAKLVPQFNQIAFF-------KVLPGFSFHDVEEVKVDHRLSIQGWYHIPQ 230
20 -20.6004lt5_A mol:protein length:327 Naegleria Tet-like dioxygenase  ali model follow..  9  96..................TAYFVCDHDGSVELAYLPNVLPKELVEEFTEKFESIQTGRKKDTGYSGILDNSMPFNYVTADLS-INYYISKLLTCVSSRTINYLVSLNDSYYALNNCLYPSPSNDGHRIRKPHKD---------NLDITPSSLFYFGNFQNTE-GYLELTDKNCKVFVQPGDVLFFKG---------NEYKHVVANITSGWRIGLVYFAHK.. 298
21 -20.4003w20_A mol:protein length:273 Putative uncharacterized protein  ali model follow..  8  27......................IHALDADEADAIVMDIVPDGERDAWWDEGFSSSPFTKNAHHAGIVATSVTLGQLQREQGDKLVSKAAEYFGIACRVNDGLRTTRFVRLFSDALDAKPLTIGHDYEVFAPHCDDVSYGRDTVN-PRQLGGFLTIQGADNDAG-AALERAAKIMLKPQPGQLTLF----------QSKNLHAIERC-TSTRRTMGLFLIHTE 266
22 -16.3006fxk_A mol:protein length:718 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3  ali model follow..  17  543................................VYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSGGYENVPTVDIHMKQVGYEDQWLQLLRTYVGPMTESLFPGYHTKARAVMN----VVRYRPDESLRPHHD-----------SSTFTLNVALNHKGLDEGGGCRFLRYDCVISPRKGWALLH--------PGRLTHYHEGLPTTWGTRYIMVSFVDPAA 717
23 -14.7004qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  12  16.............................DAAVVRPGFLSTAEEETLSRELEPELRRRRY----EYDHWDAAIHGFRETEKSRWSEASMAIMRRVQAAAFGPGQ--------TLLSSVHVLDLEARGYIKPHVD-----SIKFCGATIAGLSLLSPSVMRLVHTQEPGEWLELLLEPG--------SLYILRGSARYDFSHEERRIPRGRRISVI....... 186
24 -14.7004xbz_A mol:protein length:334 EvdO1  ali model follow..  9  37................GLLPEHVTAFRRQGVL-VVRGLLTPQELADVQEAGRALIDRAWSTRSMEDEPDQPGAAPVRIEYVVDKARPIAMLAPLLLRIMEQLVGPNLIPT----WDSMVFKTPAGAPRLAWHRDLYDNAVGVTGAGRVIDAGIYLDPAPEDNCESNYWGDDRVPAVMQPGDLLLH----------NILTLHGAPAVVGKQRRVIYFEYRPAE 259
25 -14.4002rdn_A mol:protein length:288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase  ali model follow..  9  12.........TDCTPLLGDRAALDSFYEEHGYL-FLRNVLDRDLVKTVAEQMREGLVALGAADPHATLEELTIDSFESVDEVAMHDYVKYDAFPSTIKVFEQVFGEPVFVFLSTTISQAGSEEPSFHYLTPFHQDGF------GPNQDFRTFWIPLIRTTRESGGVALADGSHLHSPMEPGDILLF----------HAHMCHKSIPNLSKDP........... 239
26 -14.4005ybl_A mol:protein length:314 Multifunctional dioxygenase ausE  ali model follow..  8  40...............................CVIIEGFVPPDQMARFSQEIQPAMEKIQVQVTNDGNSNDRVKRFSKLVTTSPTFRHEILENDLMHELLQRVFSKPGEGMGYHFNDTMVIEVQPGAPAQRLHRDQWWNSMGPDAPECLVNFFCAVTPFTVENGATRLVPGSNVPAIMQPGDCYMM----------SGKVIHGAGHNATLSD-TIRRELRPVQ 252
27 -14.2004nj4_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  11  18.........PERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLV-EHRVIPEGFVNSAVINDYQPGGCIVSHVD-----PIHIFERPIVSVLCFGCKFQFKPIRVS---EPVLSLPVRRGSVTVL------SGYAADEITHCIRPQDIKERRAVIILRKTRL 239
28 -14.2004mhr_A mol:protein length:314 Ectoine hydroxylase  ali model follow..  13  34................PISARQAAAFDRDGYI-VLEDIFSADEVAFLQKAAGNLLADPAALDADTIVTEPQSNEIRSIFEIHAQSPVMARLAARLADVARFLLGDEVYI----HQSRLNYKPGFKGREFYWHSDFTWHVEDGMPRMRALSMSVLLAENTPHNGPLMVIPGSHVAPTGKPGTVILF----------DCNLMHGSNGNITPFP........... 257
29 -14.1004xaa_A mol:protein length:223 Putative oxygenase  ali model follow..  8  6................LDRAAAIERFRRDGFANA-GPVLAPDAIARLKAGAERLITRFTDEGLRSDNFPVEGDERPVLYRVHNLEKQDWAPERDLREELAQLAAAFVDGPVVPTAYALVLKEPYRAAEVPWHRDRVN------GPRTVCNLSICLDDAGPHNGCLEAVPGSHVPVPVSQGDVVVH----------DVRLVHGSGPNANGSW........... 206
30 -14.0005nch_A mol:protein length:268 Leucine hydroxylase  ali model follow..  14  4...............MQLTADQVEKYKSDGYV-LLEGAFSPEEVHVMRQALKKDQEVQGPHRILEEDGRTVRALYASHTRQSVFDQLSRS--DRLLGPATQLLECDLYI----HQFKINTKRAFGGDSWAWHQDFVWRDTDGLPAPRAVNVGVFLSDVTEFNGPVVFLSGSHVSPKAASGSVMLF----------HPEIIHGSAPNISPFA........... 223
31 -14.0005y7t_B mol:protein length:315 Iron/alpha-ketoglutarate-dependent dioxygenase asqJ  ali model follow..  11  33...............................AAIIESFLSLDIVRRLNE-EVDPFVKIEPIPAAKTKDHPNHVLSTTTRLVNVLAPISKAYREDVLNSLHRICSDAFHVYGDYWVLMGAVMELAPSNPAQPHRDM-VEYLKPDAPATSINFLVALSPFTAENGATHVILGSHVRALMNPGDALLI----------TDSTIHCGGAETTGTETMGISQLTPLE 240
32 -13.9005zm2_A mol:protein length:306 Dioxygenase andA  ali model follow..  15  1MGSSSSGLVPRGSHMPPIRRVNASQGSDA--CVIVEQVICPNIIAKISD-DVNRVMDKATIGAKKGEQTHIINMHNRTIHMGDLVLTSKTYRDELLNLLEKVFKKDSGDYWLNMGNILNM---LPGAEAQRHRD-SQHMDPATSPDLMINITFPLNEFRHDNGGTLLLPKSHPAAEMQVGDALIF----------TGKCVHGGGANRSDKP-AQPGYLTPRE 247
33 -13.8005ybm_A mol:protein length:314 PrhA  ali model follow..  8  40...............................CVVIEGFISPEQVARFSQEVDPAMEKIPVEVTNNGNSNDRTKRFSKCVIASPTFRNEIIESDLMHELCDRVFSKPGEGMGYHFNDNMVIEVQPGAPAQRLHRDQWWNSMGPAGPECVINFFCAVTPFTEENGATRLVPGSHVPAIMQPGDCYLM----------SGKVIHGAGHNATTTD-IIRRELRPMQ 252
34 -13.5003emr_A mol:protein length:310 EctD  ali model follow..  11  34................PITKEQLDSYEKNGFLQI-KNFFSEDEVIDMQKAIFELQDSIKDVASDKVIREPESNDIRSIFHVHQDDNYFQDVAKRILDIVRHLLGSDVYV----HQSRINYKPGFKGKEFDWHSDFTWHVEDGMPRMRAISVSIALSDNYSFNGPLMLIPGSHSVPTGKAGSVTLF----------ESNTMHGSTSNITPYP........... 258
35 -13.4004nao_A mol:protein length:326 Putative oxygenase  ali model follow..  11  38...............................VAIIEGFLTPEQVQKLNKDVDAPLKADREQLKFKADKKDDPHFPDHVARVHNLVDFSHCFRHEILNHLHKICRLTFEESGDYWLGYGAVIENGPGTTEQKHRDYPLVKEGPDAPEGMLNFFTALTDFDAETGKTQYILGSNEYVGLKPGDTTIV----------SGKITHRGSDNRSDKM-IIPSILTPFD 250
36 -12.9005m0t_A mol:protein length:294 Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH  ali model follow..  9  33...............................VVVIEGFMSADQVRRFNGEIDPHMKQWE-----LGQKSYQESYLAGMRQLSSLPLFSKLFRDELMNDCKRLFGPESGDYWLTTSSVLET---EPGYHGQEHREHICTTLGRQSPESMLNFLTALTDFTAENGATRVLPGSHIPAVMNPGDAVLF----------TGKTLHGAGKNNTTDFIMQSCQFTPVE 238
37 -12.7004y5s_A mol:protein length:315 Verruculogen synthase  ali model follow..  9  33...............................AFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLAD----KYPPHFKYVPNVATTCPTFRNTVNPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPHRDDLMHYQPLEAPPVSLSVIFPLTEFTEENGATEVILGSHVLATMDPGDVLIV----------RQRVVHAGGG................. 212
38 -12.4004npl_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  9  20................................IKQASIFTLEECARIEAKIDEAPLRNKYFFGEGYTYGAQLEKRGPGQERLYSKGEVDDIPDWVHELVIDRL-VTHGVIPEGFVNSAVINDYQPGGCIVSHVD-----PIHIFERPIVSVLCFGCKFLFKPIRVS---EPVLHLPVRRGSVTVL------SGYAADDITHCIRP-IKERRAVII....... 212
39 -12.4005ep9_A mol:protein length:305 SnoN,Epimerase SnoN  ali model follow..  10  24................AALERLAARYRRDGYVHV-PGVLDAGEVAEYLAEARRLLAHEESVRWGSGAGTVMDYVADAQLGSDTMRRLATH--PRIAALAEYLAGSPLRLFKLE-----ENKEKDASVPTAPHHDAF----PFSTAGTALTAWVALVDVPVERGCMTFVPGSHVTVPLRAGDCTFH----------HARTVHSAGANSTDEP........... 228
40 -12.3002rg4_A mol:protein length:216 Uncharacterized protein  ali model follow..  10  3.....................LAQIKSLFATRLYHAPLSEHGPALDPAEFAASCYSIAEDDDAGQEWCEREGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAFAEDLEFELDGDIWINILPEGGVHGSHIH----------PHSVISGTTYVAMPEGTSALKLEDPRLPRSVAPKVGDVLLWES-----------LRHEVPMNMAEEDRISVSF..... 203
41 -12.2005epa_A mol:protein length:279 SnoK  ali model follow..  11  1MARSADPDPGGPTTAENLSKEAVRFYREQGYVHI-PRVLSETEVTAFRAACEEVLEKEGREIWGAGEDEVQVHYVAQAWQKH----RSLVLHPEISGIALRLAGAPLRVY----SSDILVKEPKRTLPTLVHDDE-----PLNELSATLTAWIALTDVPVERGCMSYVPGSHVAVPVRAGDVVFH----------HCRTVHMAEANTSDSV........... 225
42 -12.2002a1x_A mol:protein length:308 Phytanoyl-CoA dioxygenase  ali model follow..  10  22................VLTLEQRKFYEENGFLVI-KNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDEILKYVECFTGPNIMAMH----TMLINKPPDSGKKTSRHPLHQDHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHVHLVMEKGDTVFF----------HPLLIHGSGQ................. 238
43 -12.1004o61_A mol:protein length:222 RNA demethylase ALKBH5  ali model follow..  10  14.............................KSGIRQMRLFSQDECAKIEARIDEAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLV-EHRVIPEGFVNSAVINDYQPGGCIVSHVD-----PIHIFERPIVSVLCFGCKFQFKPIRVS---EPVLSLPVRRGSVTVL------SGYAADEITHCIRP-IKERRAVII....... 209
44 -12.1003khb_A mol:protein length:219 Alpha-ketoglutarate-dependent dioxygenase alkB  ali model follow..  7  7................LFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMGYLYSPIDPQTNKPWPAMPQSFHNLCQRA-ATAAGYPDFQPDACLINRYAPGAKLSLHQD----KDEPDLRAPIVSVSL---------GLPAIFNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLT--FRQ.. 214
45 -12.0004xab_A mol:protein length:252 EvdO2  ali model follow..  10  1........MDAMEVVGTIDHRDREEFRSRGFAIL-PQVASESEVAWLRQAYDRLFVRRATPGAEDFYDIAGQRDREGPPLLPQIIKLDSPHFARCRSIASAFLDMAEEEL---FYGHAILKPPRYGAPTPWHQDEA----DPRWRRRGLSIWTTLDEATVESGCLHYLPGGHVACPLAPGGAVVH----------DFRTPHYAGPNLTDQP........... 225
46 -11.9003bvc_A mol:protein length:212 Uncharacterized protein Ism_01780  ali model follow..  7  7.............................VTRLYHAPLSDHGPAIDAEEMESSCYAIAEDDEAGQGWCEENGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAFAEDLEFDLDGDLWINILPEGGSHASHIH----------PHSVISGTTYVSMPGGTSALKLEDPR-FIYVTPAVGDVLLWHEVPMNMSEDDRISVSFNYRWAEG............. 206
47 -11.9005xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed  ali model follow..  13  5.......................PLQYLRPGMVLLKKFLKHDDQVDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWIPEVFSKIVKDAIQASNEFLRQDVEELPPLSPDICLVNFYTSSGKLGLHQDKDETKPSLHKGLPVVSFSL---------GDTAEFVDKASKVDLESGDVLIF-------GGKSRLIFHGVSRIKPKT............ 208
48 -11.8003thp_A mol:protein length:345 Alkylated DNA repair protein alkB homolog 8  ali model follow..  13  111.............................PGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEWLRKGYIKHKPDQMTINQYEPGQGIPAHID-----THSAFEDEIVSLSL--------------------------GSEIVMDFKHPDGIAVPVMLPRRSLLVMTGE--SRYLWTHG.. 269
49 -11.8003nnf_A mol:protein length:344 CurA  ali model follow..  8  23.................QVEQLKQEYEEKGYCQI-KKIFDFSAIKTIQKTLDQAKQESQISKEKVTLKLGGIDDIDTNDHAYDLVKYVSSFIQEKLALLNYITG------NLMIMHNALFSVEPNHKGLPWHVGVG---SFTKTEDFGASIWIPLDKITKEHRGGMQYKDGYEEDEYNLGDAFFF----------NKYVLHQSVPLKPGLH........... 256
50 -11.6002fd8_A mol:protein length:211 Alkylated DNA repair protein alkB  ali model follow..  7  7.............................AGAVILRRFAFNAAEQLIRDIND-SVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG-----YPDFQPDACLINRYAPGAKLSLHQD----KDEPDLRAPIVSVSL---------GLPAIFNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLT--FRQ.. 201
51 -11.3004nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase AlkB  ali model follow..  6  6.............................AGAVILRRFAFNAAEQLIRDIND-SVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG-----YPDFQPDACLINRYAPGAKLCLHQD----KIHPDLRAPIVSVSL---------GLPAIFNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLT--FRQ.. 200
52 -11.2003gja_A mol:protein length:319 CytC3  ali model follow..  12  3........TVSEQANFTFSPEEVARFERDGYIGP-VKIFEPEEMTRRWNIIRRQLLDRSLAIYPDSNGKANISNYDRHLDIDLLAEHIMR--PEIVDRVGSLIG------NLLCWRSEFFPKYQGDEGTDWHQAAWPSDEGRPAFIGTITVWTAFTHSTEQNGCLQLMPGTHYPMVLKPGEAVIF----------WSNTMHASLPHTGSKT........... 250
53 -11.2004xcb_A mol:protein length:261 oxidase/hydroxylase  ali model follow..  6  7.................LTREQLYIFDTTGFL-VIPGVFGSGEVESFRSEL------ERLDTVDPGFPRTRRYPDLPAASPVFARLALDDLLAPVRDVVNQPLRLLEGYGLRRTKDSVLYLHGGDLGDRQVGRDITHTYHDGKLYCPYVKALVYLSDIQSPEDGSFYVQGSHSDVFVRSGDVLLL----------NEALMHGTRRKLTEGD........... 219
54 -10.6002opw_A mol:protein length:291 PHYHD1 protein  ali model follow..  11  3................CLSPSQLQKFQQDGFL-VLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRKVQTLARSLGLQMPVVVQ----SMYIFKQPHFGGEVSPHQDAS----YTEPLGRVLGVWIAVEDATLENGCLWFIPGSHVPTPVQRGALVLI----------HGEVVHKSKQNLSDRS........... 256
55 -10.3006EC3 Entity 1(prereleased)  ali follow..  12  247................ARLGAQIRRFREDGFVNA-GPVFADDTIARLKAGAIDLISRFTEHGHVSDDYWNYDVENYRIHNLEKQDWAERELLPELAELAAAFVGSPVVPT----AFALVLKEPKRAAGVPWHRDRANVAP-----HTVCNLSICLDTAGPENGCLEGVPGSHVPVPSKVGDVIVH----------DVRLVHGSGPNPSDQW........... 445
56 -10.2002fct_A mol:protein length:313 syringomycin biosynthesis enzyme 2  ali model follow..  10  2.........SHMSKKFALTAEQRASFEKNGFIGP-FDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIANYDRHLDDDFLASHICREICDRVESILG------NVLCWRTEFFPKYPGDEGTDWHQADQIIWPENEEFGGTITVWTAFTDANIANGCLQFIPGTQVPMQMKAGQFIIF----------WSTLMHASYP................. 242
57 -9.9304diq_A mol:protein length:489 Lysine-specific demethylase NO66  ali model follow..  12  50................LIAPMPPDHFEREAVLVYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAALYQAGCSLRLLCPQAFSTTVWQF-LAVLQEQFGSMAGSNVYPNSQGFAPHYDDIEAFVLQLEGRKLWRVELALTSSPNFSQDDLGEPVLQTVLEP--GDLLYF--IHQAECQDGVHSLHLTLST................ 263
58 -9.7804y4r_A mol:protein length:454 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66  ali model follow..  12  34................LIAPMPPDHFEREAVLVYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAYQAGCSLRLLCPQAFSTTVWQF-LAVLQEQFGSMAGSNVYPNSQGFAPHYDDIEAFVLQLEGRKLWRVELALTSSPNFSQDDLGEPVLQTVLEP--GDLLYF--IHQAECQDGVHSLHLTLST................ 247
59 -9.0002xdv_A mol:protein length:442 MYC-INDUCED NUCLEAR ANTIGEN  ali model follow..  10  22................LISPIKTETFEQKPLLI-YGSLFKLTDLKSLCSYYGRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRI-QEKLECYFGSLVGSNVYAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAE-PVHEFMLKP--GDLLYF---QADTPAGLAHSTHVTISTYQNNSWG......... 242
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.