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Query: 5cag_A mol:protein length:318 Uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GMLTGCSRRDILDDYPVSGVDIKLDWDGVTDQLPEGVRVIFYPKNGDGRKVDKYLSVRGGEMKVPPGRYSVVVYNYNTESIRIRGEESYETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKIEKSEEVLRLDWKLESVVKKYSFAVEAKGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFFTAFKQVKEMTMPTRMSTSERETSSEKGAIILILKFIKTDNTVQEATIDVTEIIGTLENAGTGEDGKPTPPPEIELPPDDKIEVDKPETPPNPDGGGGMGGNVDGWGPEDNVELPVNLast
1 -114.0005cag_A mol:protein length:318 Uncharacterized protein  ali model  100  1GMLTGCSRRDILDDYPVSGVDIKLDWDGVTDQLPEGVRVIFYPKNGDGRKVDKYLSVRGGEMKVPPGRYSVVVYNYNTESIRIRGEESYETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKIEKSEEVLRLDWKLESVVKKYSFAVEAKGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFFTAFKQVKEMTMPTRMSTSERETSSEKGAIILILKFIKTDNTVQEATIDVTEIIGTLENAGTGEDGKPTPPPEIELPPDDKIEVDKPETPPNPDGGGGMGGNVDGWGPEDNVELPVN 318
2 -38.2004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  7  1...GERIYEDLAPCPHGVSLRFIYDYNNAFAKKVDCLTLLVYDENGNYVDTRIVTGTE-MKLDLKQGNYHFVAYGGLACNKSSFLMKYTPGEGTGYTDVELDSECLTNPRRKNLHGLYWGELTLAT---ADLYSEGTVEMMKNTNNIRVVLQ-GEPVDDKKFEFEITDDNILFSYDNNLLENGMVTYTPWAQGQASAGFTD-------EGREVVVAYAELSTSRLMVRDWYSPKLTVRRKADGVEIINIPLINYLLMLKDLYASMDSQEFLDRESEWSMIFFL--------SPNLEWIKTYIKINDWTVRIN-DIR.. 309
3 -37.3003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  9  1GASCDSFNEDLPECRLSVKFKYDYN-ADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALMEVELPVGQYQFMAWAGARDSYDITSLT--PGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQ-TETINLIRDTKIVRFGFQ-SWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRYMEQKDPATAYVDMNTMRLMED--------------------RKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFL----------SESWLAVQIVVNGWVHRIQ...... 292
4 -35.5003pay_A mol:protein length:314 putative adhesin  ali model follow..  7  3...CDSIREDLPRCELWLEFVFDYNMEYADNPQVKSVDVLVFDSDDKLLFTKSVKVAASLTDELDFGSYKVLTVGSLSDRFRLSDNAKLVPGTTTLQQVIVSLKRETGGVNFEFQHLYFGEVVEVDHLSNTNHKIYPVNLIRDTNRFNLALM-ENKVDGTQYTFEIQAPENAVYSWENEPTGQGPIYTGPGEISDVVMSARLNTMRLL------------------NRSGWDYKFIIRDANTEAEVWSYNLMTLLSIARPVSRYDGTELPFQEYLDRQSEWNLVFTVVE--KNGGGFLQIGIVVGTWIHLHGMEV... 314
5 -32.5005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  12  1.....CPRG----------VYVNFYSNPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAPLEKDGLYTIFAWGNIDDHYNIGGETTKQQVLMRLKQ------DGKWATNIDGTTLWYATSPVVELKNADQYIHTRANLREYTNRVTVSVD--SLPHPENYEIKLASSNGSYRFDGTVAKADSTYYGETKVVGDSTCRAFFTTLKLES--------------------GHENTLSVTHKPTGREIFRTDLVGAILSSQYAQ---------NINLRCINDFDIRLVAHHCNCPDDTYVVVQIWINGWL.......... 277
6 -25.2005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  8  16.YFQGAMRGVDPQPDPLQPLLVNAR-AEDFEDRVHSLAMLVFDSNTGEKVAEHFSSSIGFTVKLKPGQRDFFVANIPNMQTAMASIVNKSDMNHFMQVFRDLDPIHYHNATNNNGFPMSRMYSNQTVTIGKPDGENNVKLQRVVAKLDVNIV---EGVENLQKIELCNANVHYRLVPNQSEPIQFYGPVELRRVGATNQWLGYM------PEAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITGGQYLPFAKGLLADKPSYTVYRNRHYIYRIKTL----------PDKIEVKYSICDWNIVTN...... 345
7 -20.2004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  8  1....GNDEVENLGNNVPGVLTIKLK-TDTEDAVINNYLVFLFREGGACAPYEGSSNAAATITTGTTAAKKAYVVANTGALAGGLFATVKTETDLLAVTGSLMDNTDNASTQTKTNLWMSGESEVKFNGGTNAQVTVSL--SFVAAKIQLIVKDNRKNTITDDAAVLLFAGKKGRFFGSAAEKVTQNEFYTTINAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVGGTSSPIFYPILFTIEPGKSYTVTVTLNGDVAAGGGGGTTDPEEPVVSSSIEVTV-----------------------TAAQWVT-QPVDKEFN 348
8 -18.5003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  10  1.................GDVAYELP-DVEQQEKINSMRFIVFGSTPGGVRLDVNEHILLST-VTSSNDILVVVIANEPQSLTLDGIANLLTLQEMIYDISSILNSDGQIISATGMPMTGVIRDISIAPDETKTVQMVI--ERAVARVDVFIEAIDGGAVTGYTAGSTSVHDSYFVMGNVGNGTRDNADSSKNYGKVKEDVSESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTLFKSDYSDRLSISMANVLKGPSTGSPTAQPFTEIRRNNVYQVTARVG---------KIGIQILTISVEDWGERQDIDLDMD 346
9 -16.5004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  9  2.........EMTEMNPDTNRTIGLD-TTSTLKANAGFGIFAYQTSSAGWNSEKGNTTYNEHATWTSDSWGYRFWPIDDKKITFFAYAPYESKPEVGTDQKITEVKTSNNWKDMIDLVTDCHTAIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDTKIFVTGLKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTT-QWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVTDTSNLTSTITNKEKHTYVLTIKMNAIKIT--------VEDNMEGWTDDSDSDINVE 358
10 -16.0004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  11  2.......KDNEAEPVVETNATVSFI-DDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVE-SGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAGKSAAFTIKPGSNHYGYPGGTASDNLVSAGTPLAV--TRVHAGISFAGVEVNMAKPADAKIAALVAKKDSKIFGNSLVSNTNAYLYGVQTPAGLYTPDAAG-NTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDDGTTYYPVLVNYDGNGYIYSGAITQGQNKIVRNNHYKISLNIT-NTPENPQPVQANLNVTCQVTPWVVVNQ...... 365
11 -15.1004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  9  1....GKDEDPVLP-LEGAKLSVAVK-ELEGEAYINNLAVVVFNETGTELLGYKWEALSGAEPTTKAVRARIIVLANVPRDL-LSTVSTYDEFQTRLVDLSSQSQTNVTKSALSEEDNYLGYTDLGDQNVDGISDPILL--TRVAARIDLVNISTRFAEVRIDAVGIYNMKTKSYYFSEADWGETEAPDAVRNSEDTSFEDLLVN---DGTSISNTPFVHYVMENMKSDDHTMIAVKATLRQDHTKIFTAVINAGGLQNGYDHNFIRRNYVYRLRIYFDGESFDNIPVTDPEPEVDTNLNIAVQVVGWGP-VMQHPVID 355
12 -14.9003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  15  1....GDDNEIEIPKAPVLQLALAIK-TTPTDADVNTLTVGVFGVDGWSVIYTKDATPNSGPQEVYAGEAHVVVVANAAPVIELAKAKDITDFIETTINLSDETLTKGLTMSSKVLDV-VGDITVKDISGKEVYGAGPVPLVRDVASIALAGADIGNPSFVLKEVFIASAKGVSSVASTEEWGTIEKDFFGDTHFGYLDYKVGLLFLTSPENTKGEVKSGESNVNEAYANHTLLIVKGDYTYKENCYYAIPVGE---EVTIDGTEKRSKFYVQRNYKYEISLTIIGPGSEIPYDISTNVSASVKVEPWNV-KTIHEEVE 402
13 -14.9004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  9  2......GENTPQPTDGRVALEATSGIRMNTRAYDKTWAIGIYMLNGDATDGNGNRK-YTTAQTAENGSFTAIYFPVDASQRDFVAYYPYRETLADGNVYTVDVSVQTP--QKDIDLMGAAKVEGK----DKTDPKVAFVFTHKLVKLDITIKADGDADLAGTTVSISNQAATYNVVTGGDATVTTGTTKEIVLHTDGLKAEGIVL-------------------AASTAGMALTFTVPGLEGQAFHWDVNSAAQSKAFVAGS---------KYLYTITIS--------------KAGVEVSSKVEDWTPGNGGGETGN 280
14 -14.7003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  9  1....GSDDREMDDGRSALRVPLQVS-PDPVPLTEGAIGIFLSGTEPESGQEDSGYKVDNRKYVYSEGHWGPDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQDYVETE----DIYYALNTMI-----NGFTPAITFDMVHAYSLVELKISRENPCEISKITLKNSNLKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEGGEFGLSVSLVI-DGQQMLVEIPYSELGE-----------RQGEKYVIGLKIK--------------GTEIVPTVKALEWEDEEVNGGNKY 305
15 -13.1004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  8  1...GAAGSPEEDMEDRVRI-GATPDGETLKDEDGSTIRLVVYDDAKNLLEEYAVISSSSTPLYMKAGTYYFRILS------PAKALNSKGFVNIGNGEYLLATDDRYTQTAMTAVTITKIDEGGTL---NNVQTLYLPPIINQTARMQFTVRAGHTLEMLAEGIEISGIPLDNTTSFDWVNGDVLPITQATRNADNSLVAHTGVLPTDARSHSISVLLNLKVNGNPTQYQMLLT-GLYLTAGHSYNYTATVKI----------------------------------------SNGVTVLTWQNRSWTENVVMD.... 326
16 -12.8004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  9  1...GACSNDEEMATGGQNQMSVSVAMPKSDEQNVKEVLLALFDASDVCLETKTLATTDGKAFKVPSATAKVLAVVNPSDKFK-ASASWSAINGAVEQTLDEVTGTSKNNFMMINAGDNANPTNGALVTSEAQADRSMIYVDRVVAKVSLGTNPDGLKTCTFGDWALNITNKSMFPYSEIVMPAGGSTGADYRIDPN.......................................................................................................................... 255
17 -11.6003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  9  94..................................................................GEFTLNAY------YPYQGANGTLPGTEGVIAKTISGADQTTDKQPQIDFLFAQA------TGVRAESPVTFDFSHKMTKIILKFKATNGATLNNMKVYLKSLEGSFNVTTGEAVAKSGA------------TPNSELSMDIAKPAEGEMTASIILFPQDMPEKVLLEVRMNLESGHAYPYNVTFEN-------------------PAMTIT----------------------KAEIEDWIVEDDKDVTAS 294
18 -10.9005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  5  5..........................GSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGTQSEAGERKVYVVANVDNAVKLDAVANESDLQTVKRTTAMPWSTDIASPFLMSG--------NKTHDFLANRLLDNVPLVRAIAKVELNISLSENGSLSEFKFRYVNFDKETYVVKPTTKPDNLI.................................................................................................................................... 181
19 -10.6003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  11  15..................DMSLVLLTGDMEELTIQNCHVAVFDKDGKRIYFKNFYSKDLGEFGKEDKKVSVLVVANANNANPFDNLTTYDGVDNSYTAKTIAKGPVTA------SLLVKIGKSETTLKYNQDNAPVTVSLIQLSAKIEYTGVYKKENGELLEGFSLTKVA.................................................................................................................................................... 195
20 -10.5004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  10  2.........DELQETSKEATNFSISIDDALSDPLTRTSNDLFPARNSEVISMAASGQDYTPFIVGKDSRAWNEIGTATGTVTFYAHYPALTDEAATRSGGNKRYLKGGQ-----EHLFGTA------EAAPGSQNVSLKFKRMTVPVIILDENDRPYEGEAKVELSLKNEGTQDLLNGTIEINENALSENIEVKKVSEGVTTNVLPQKINAGEEIGTITVG----GVTQKISAVEDLDLKAGSTLSVRLSKKF------------------------------------------GGGIIDGNVPLYR.......... 247
21 -10.0004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  5  2................DRSIEISIR-GSAAERLITNLYLLLFDQSGANPAKYYITGNTFTGTQSEAGERKVYVVANVDNAVALDAVANESDLQTVKRTTAMPWSTDIASPFLMSG--------NKTHDFLANRLLDNVPLVRAIAKVELNISLSENGSLSEFKFRYVNFDKETYVVKPTTKPDNLI.................................................................................................................................... 204
22 -9.3303sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  8  27..........................RGIINDNTYALGVFRTTANTYAPLYNVKHIYSGGEIKVDYRNASFFAY-------------HTATGNYAGLAGGTTLTLQAQLFNAGEDICYGGEASGGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTTFKSNNANFTRSLDIASTAGATGGSAVAAGYVHNPNVNIATYEYMFPPQPLDGSKLTILVTVDGVTRSCDISTL-GSSLDSGKYYGVSLTFTDV---------------------GIILS--------------------SAVVTVNNFGGQGNTQVD 288
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.