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Query: 5cyb_A mol:protein length:152 Lipoprotein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150
# Score Template Links and tools%idFirst MKLKRFTLSLASLASFSLLVACSQRAQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTLDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTKLast
1 -85.9005cyb_A mol:protein length:152 Lipoprotein  ali model  100  1MKLKRFTLSLASLASFSLLVACSQRAQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTLDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK 152
2 -48.4003ge2_A mol:protein length:130 Lipoprotein, putative  ali model follow..  97  1......................SNAAQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTFDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK 130
3 -12.8006anv_A mol:protein length:452 anti-CRISPR protein AcrF1 fused with C-terminal MBP tag  ali model follow..  13  41VGARDFDSTEQLESWFYGLPGSGLGRIENAMNEISRRENPLEKIEEGKLVNGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKEKFPQVAATGDGPDIIFWAHDQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAY............... 188
4 -12.5005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  4  1..MKPMSDYDIPTTENLYFQGAMRGVDPQPDPLQPDVYLLVNARAAHTNGEESINMD--AEDFEDRVHSLAM................................................................................ 68
5 -11.9003p24_A mol:protein length:397 BFT-3  ali model follow..  22  1..MKNVKLLLM-LGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQLND............................................................................................... 54
6 -11.7003qfg_A mol:protein length:242 Uncharacterized protein  ali model follow..  3  1..........MGSSENLYFQGCGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIKGDT..................................................................................... 57
7 -11.6004jg9_A mol:protein length:174 Lipoprotein  ali model follow..  15  1..MKKIGTMLL---FSILIAGCTQAQPDLKKPKKEAIATSSTQVNAPSFFHLSVLKD............................................................................................... 52
8 -11.1005ok8_A mol:protein length:175 LPP20 lipoprotein  ali model follow..  13  1MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGA............................................................................................................ 44
9 -10.1001s7d_A mol:protein length:216 Metal-binding Protein yodA  ali model follow..  10  1MAIRLYKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGVFDDANVQNRTLSDW----------------------DGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYDIEMIGIEDGIVEFHRNNETTSCKYDYD. 131
10 -10.0004lvq_A mol:protein length:376 Phosphate-binding protein PstS 3  ali model follow..  13  1MKLNRGAAVGVLAAGALVLSACGNDDNVTGGGATTGQASAKVDCGGKKSTAQANAMTRFVNVFEQACPGQTLNYTANGSGAGEFNGNQTDFGGSDVPLSKDEAAAAQRRCGSPAWNLPVVFGPIAVTYNLNS.................... 141
11 -9.8703v8u_A mol:protein length:717 Transferrin binding-protein B  ali model follow..  9  1MSYYDYDIPTTENLYF--QGAMLGGGGSFDLDSVDTEAPRPAPKYQDVFSEKPQAQ................................................................................................ 54
12 -9.7503utk_A mol:protein length:133 Lipoprotein outS  ali model follow..  16  1MHVSSLKVVLFGVCCL-SLAACQTPAPVKNTASRSAASVPANEQISQLAS...................................................................................................... 49
13 -9.5204g68_A mol:protein length:456 ABC transporter  ali model follow..  12  13NNLSKSNTSNSSKTSSSSKKMCSSNNLSKSNTSNSSKTSSSSKKIT-NLFTGEPAKTKVKEIIDQWNKENP................................................................................. 86
14 -9.4803ady_A mol:protein length:148 DotD  ali model follow..  7  1...............GSHMAGTMKFKKPPINNPSDDATIKLAEAAVSVSDSMLEMAKVEKVITPPS...................................................................................... 51
15 -9.2504r9f_A mol:protein length:447 MBP1  ali model follow..  6  5FLKGKAIIAMLLVIAVLAFAGCSGSSTKNSSTNGNKKQVVLTLWYPWAGPDGDAVVSLAKEYSKTH...................................................................................... 70
16 -9.1302y1b_A mol:protein length:128 PUTATIVE OUTER MEMBRANE PROTEIN, SIGNAL  ali model follow..  8  1.........MGSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATP-----------------RIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVEVTSGTPGCYRQAVCIGSALNITAKLE.......... 122
17 -9.0603vgi_A mol:protein length:319 Endoglucanase A  ali model follow..  10  1MSKKKFVI-VSILTILLVQAIYFVEKYHTSEDKSTSNTSSTPPQTTLSTTKVLKIRY............................................................................................... 56
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.