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Query: 5eur_A mol:protein length:136 Uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MSISYRKLDIALSADKETVLVFGQELSTKYFTEIVVTTMLNSTGSDMANSNRILNDIHAAGLDAGDYGKYSRWWAQSNAQERQEAERRRKEAKAHQERMAAIHATPEEIAKAVAERKAREEALIKRFGNKGAAFGLLast
1 -87.7005eur_A mol:protein length:136 Uncharacterized protein  ali model  100  1MSISYRKLDIALSADKETVLVFGQELSTKYFTEIVVTTMLNSTGSDMANSNRILNDIHAAGLDAGDYGKYSRWWAQSNAQERQEAERRRKEAKAHQERMAAIHATPEEIAKAVAERKAREEALIKRFGNKGAAFGL 136
2 -7.6105hmo_A mol:protein length:134 Unconventional myosin-X  ali model follow..  32  11.......................................................................RVYRQLLAEKRAEEEKRKREEEEKRKR---------EEEERERERERREAELRAQ.......... 56
3 -7.3705xjc_X mol:protein length:184 PRKR-interacting protein 1  ali model follow..  20  70.........................................................SSAGAGSGEF-HVYRHLRRREYQRDAMAEKQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLLA.......... 141
4 -7.0703qc1_A mol:protein length:243 Immunoglobulin-binding protein 1  ali model follow..  12  73........QLDLFSRNEDL----EEIASTDLKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALKSA... 193
5 -6.6205jpq_g mol:protein length:322 KRR1 small subunit processome component  ali model follow..  18  275..........................................................................KQRAAEAERAEKARQKKEEKKREREKEFVPPEEDGGKKKKRKVKHGEE.............. 322
6 -6.5503lkx_A mol:protein length:66 Transcription factor BTF3  ali model follow..  18  26........KVQASLAANTFTITGHAETKQLTE--MLPSILNQLGADS......................................................................................... 62
7 -6.2605xyi_Y mol:protein length:140 Ribosomal protein S24e, putative  ali model follow..  11  3......KVSVHIRKYIVNKLLDRKQFVIDMQTRDEIKDEVASRLKANKDLVVIFGLETKFG-SLDALKKTEPKHRLIKAGLAEKGKVTRRMRKNARRQKVKVWGSGKRAEAHKIRRQQRKEELGSH.......... 140
8 -6.1404iyp_A mol:protein length:222 Immunoglobulin-binding protein 1  ali model follow..  10  60........QLDLFSRNEDL----EEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVESGQADDERVRE.... 179
9 -5.9705y81_C mol:protein length:336 Chromatin modification-related protein EAF1  ali model follow..  116.......................................................................EAIRKCMKKRENTPRPNPTQPRKPLDCKNMKVPTPAEMSLLKAQRDEALRRDIQLRRTVKNR... 177
10 -5.8204tsh_A mol:protein length:121 Surface protein adhesin  ali model follow..  10  42.............................................PKTDLDQAAKDAKSAGVNVVQDADVNKGTVKTAEEAVQKETEIKEDYTKQAEDIKKTTDQYKSDVAAHEAEVAKIKA.............. 118

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.