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Query: 5fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVKKDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLKFQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSGGMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVESNGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPEFEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKKLCRKVGNDHMELKKELast
1 -210.0005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model  100  1MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVKKDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLKFQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSGGMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVESNGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPEFEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKKLCRKVGNDHMELKKE 735
2 -186.0005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  100  1MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVKKDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLKFQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSGGMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVESNGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPEFEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKKLCRKVGNDHMELKKE 747
3 -171.0004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  86  1MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNSSNSSSSSVLNENGSRGSLVKKDDPEYAEERERMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLKFQSKKKINPVTDFHLPVRLHRKDSRNFQFQLTRAEIVQSQREICEYKKKADQERSTPIPGGMNKPGTVPLNNTARDGSQTPVIDSAIKDNATNGVNSMTATATGSSVPPASPNPASAVENNAVAIGSSGASGTVATDPTNGKLLVTK------EDAGPAEDPTKVGMVKYDGKEVANEPEFEEGTMDPLADVAPDGGGRAKRGNMRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKEKPLESIVVQEKETPAPLITEQDIIDAIGDGKVNVKEFGKSIRRRYPGAENKKLMFAIVKKLCRKVDNEHMELKKE 730
4 -75.8005iy6_S mol:protein length:517 General transcription factor IIF subunit 1  ali model follow..  13  67...........................................................................................................................................................................................................................................................................................................................AGSEFNRKLREEARRKKY---GIVLKEFRPEDQPWLLRNGKSGRKFKGIKKGGVTENYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEAGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTSEQTVNVLAQILKRLNPERKM-HFSLKE. 517
5 -41.5005fmf_U mol:protein length:150 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1  ali model follow..  65  13.....................................................................................................................................................................................................................................................................................PKEDLERTHLLKFQSKKKINPVTHLPVRLHRKDTRNLQFQLADVAGNLRRKTRQLKV--LENAKKLRFEFYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKS.............................................................................................................................................................................................................................................................................................................................. 150
6 -21.6006g90_J mol:protein length:620 U1 small nuclear ribonucleoprotein component SNU71  ali model follow..  9  266...........................................................................................................................................................................................................................................................................................................................................................................................DTNTLSDLPSDA--EF----RTKVVSIEK-----EKKMK-------STYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKRKEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLANDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLPFTADELNIRLKESRYVDELVREFL----VYEDELVEYILENIRVNQSKQ---ALLNELRETFDEDGETIADR 609
7 -17.0001i27_A mol:protein length:73 TRANSCRIPTION FACTOR IIF  ali model follow..  16  1............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPLGSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKLSSEQTVNVLAQILKRLNPERKM-HFSLKE. 73
8 -12.9004u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  9  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ASAALEVLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEINPVYDSDD--------------------------SDAETQNTIGNIPLSAYDEMPHI-KRIMRPAKGSALDQLLTGLLDKNSGSSLNLTKE 232
9 -12.7004aco_A mol:protein length:956 CENTROMERE DNA-BINDING PROTEIN COMPLEX CBF3 SUBUNIT A  ali model follow..  6  586.................................................................................................................................................................................................................................................................................................................................................................................................................QFQTLSNFQILLSVFNKIFEKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRRTKRPKQIRLLSIADDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEAKSYTDEQEFMLDKSIDSPNAKYANQCVHSMNKEFYIYLVNHESLDRYKAVDICEKRDQNEGSFSRLAKFLRKWRHDHQNSFDGL... 950
10 -12.6005x6o_G mol:protein length:747 DNA damage checkpoint protein LCD1  ali model follow..  8  3.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RETVGEFSSDDDDDILLELGTRPPRFTQIPPSSAALQTQIPTTLEVTTTTLNNKQSKNDNQLVNQLNKAQGEASM---DKINFLNIEREKEKNIQAVKVNELQVKHLQELAKLKQELQKLEDEKKFLQMEARGKSKREVITNVKPPSTTLSTNTNTITPDSSSVAIEAKPQSPQSKKRKISDNLLKKNMVPLNPNRIIPDETSLFLESILLHQIIGADLSTIEILNRLKKNFVIAKGAPIGKSIVSLLLRCKKTLTL..... 267
11 -12.4005oql_C mol:protein length:648 Utp3  ali model follow..  12  36......................................................................................................................................................................................................................................................................................................................................................................................................................DSEDEYWYKKDR---------------------------DSDDEPRSKRLKRQDKEDAFLEQSDEEIFDDELSSEEEEEDDEDERRAPTKKDGKKGAALDDDDDAELLGLGKKKDDDEIRDEGWWGSS---------KKEYYNADAIETEQDALEEEKEARRLQAKKLAKMQEADFAFDEAEWLATKDEKTGGDEEVVTEVLKEVE-------------------------------------------------------------VTSDMGPEERYNLLQARYPEFDYLVEEFRELR------PLLETLQKEAEGKPAKSLPVVK.. 262
12 -12.4005oql_B mol:protein length:907 Utp2  ali model follow..  8  217......................................................................................................................................................................................................................................................................................................................................................................................................................AGQPERKKTRKEIYEEIIAKSKMYKAERQAIKEENNELRMEVDQELPEVQQLLYQIKKPETEKKEAPVPIIAGKEKTVVDKEYDIRLKQLAMDKR-----AQPAEPVKTEEEKAAEAAKKLQELEEKRLKRMRGEPVSDDEESESEEDKGKKDKKDNAVDPLNAEESEDEFGLGKGVKYKPTATELGLDDEDDFLIDDDLVASGSELEFDSEDFSDVESDEEEGSSESKEDEEDDEFIKGILTEAEQQEAVFQQPKQGDDENGIPYTFPCPQSHEEMLNVVKGIEVTLPTVVQRIRA---DAKNKERLGNFSQVLIH............ 532
13 -12.0006ez8_A mol:protein length:3138 Huntingtin  ali model follow..  8  397....................................................................................................................................................................................................................................................................................................................................................................................................................IGQLTAAKEESGGRSRSGSIVELIAGGGSSCSPVLSRKQKGKVLLGEEEALEDDSESRSDVSSSALTASVKDEISGELAASSGVSTPGSAGHDIITEQPRSQHTLQADSVDLASCDLTSSATDGDEEDILSHSSSQVSAVPSDPAMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTDNQYLGLQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDEATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDKALALSCVGAAVAL........... 721
14 -11.6005z10_A mol:protein length:2547 Piezo-type mechanosensitive ion channel component 1  ali model follow..  10 1292............................................................................................................................................................................................................................................................................................................................................................................LQRRIFLSHYFLHVSADLKATALQASRGFALYNAANLKSINFHRQIEELAQLKRQMKRIRAKQEKYRQSQASRGQLQSKDPQDPSQEPGPDESDSEEEEEALPEDPRPAAQSAFQMAYQAWVTNAQTVLRQRRERARQERAEQLASGGDLNPDVEPVDVPEDEMAGRSHMMQRVLRAFTKHHRTMSDVLCAERYLLTQELLRVGEVRRGVLDQLYVGEDEATLSGPVETRDGPSTASSGLGAEEPLSSMTDDTSSPLSTGYNTRSGSEEIVTDAGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAELLRAGYQCVAAHSELLCYFIIILNHMVTASAASLVLPVLV............. 1714
15 -11.5006fhs_H mol:protein length:491 les2  ali model follow..  8  83......................................................................................................................................................................................................................................................................................................................................................................................................................RQATSSSGIKKAG------SVGSSSSSSGGGKAAVKRARGGKRSRVLESSEEEEEENEVEVLGDEDEEEEEEEDEIEVREGEGYDEDEEDVEDEDEEMQDLGEEDADGEDDEMDVDAEGEEDADGDVNMDAGVVGARATTVRAVPPAIKVTKPPKESPSNGKAATASKANDNAVPVKRPAPDSDDESLSSLESEPEEEVNVAGGEDAEGEDDDAEGEVDAEGEEEEEEEEIEVADEDAEGEDVEQDEDEDEEEEDDDDEMISRAQTPDMSRLTARQ..................................................... 352
16 -11.4005yz0_C mol:protein length:791 ATR-interacting protein  ali model follow..  8  28..................................................................................................................................................................................................................................................................................................................................................................................................HPPSKRARFGAHGDFTADDLEEASQALSQCPAAAR----------DVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSH-----EQEKTQALSDKEKEFSKKLQSLQSELQF-----------------KDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLI.......................................... 322
17 -11.3005z3g_b mol:protein length:427 rRNA-processing protein EBP2  ali model follow..  12  1.....................................................................................................................................................................................................................................................................................................................................................................................................................MAKGFKLKELLSH---------QKEIEKAEKLENDLKKKKSQELKKEEPTIVTASNLKKLEKKEKKADVKKEVAADTEEYQSQALSKKEKRKLKKELKKMQEQDATEAQKHMSGDEDESGDDREEEEEEEEEEEGRLDLEKLAKSDSESEDDSESENDSEEDEDVVAKEESEEKEEQEEEQDVPLSDVEFDSDA........................................................................................................................................ 185
18 -11.2005gjv_A mol:protein length:1873 Voltage-dependent L-type calcium channel subunit alpha-1S  ali model follow..  7 1472...................................................................................................................................................................................................................................................................................................................................RTALKIKTEGNFEQANEELRAIIKKIW---------------RTSMKLLDQVIPPIGDDE---VTVGKFY--------ATFLIQEHFRKFMKR---------QEEYYGYRPKKDTVQIQAGLRTIEEEAAPEIRRTISGDLTAEEELERAMVEAAMEERIFRRTGGLFGQVDTFLERTNSLPPVMANQRPLQFAEIEMEELESPVFLEDFPQDARTNPLARANTNNANANVAYGNSNHSNNQMFSSVHCEREFPGEAETPAAGRGALSHSHRALGPHSKPCAGKLNGQLVQPGMPINQAPPAPCQQPSTDPPERGQRRTSLTGSLQDEAPQRRSSEGSTPRRPAPATALLIQEALVRGGLDTLAADAGATSQALADACQ--MEPEEVEVAATELLKARESVQGMA....... 1843
19 -10.8001yo8_A mol:protein length:634 thrombospondin-2  ali model follow..  8  325....................................................................................................................................................................................................................................................................................................................................................................................................................NQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIENNAISETDFRNFQMVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTLWHDPRNIGWKDYTAYRWHLTHRPKTGYIRVLVHEGKQVMADSGPIYDQTYAGGRLSQEMVY----------SDLKYECRDIAAG............................ 628
20 -10.5006cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model follow..  7  105....................................................................................................................................................................................................................................................................................................................................................................................................IERY-KYLKKRK------NELYNVMGINKKKLLA--ISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEA................................................................................................................................................................................................................... 249
21 -10.4005ife_C mol:protein length:1304 Splicing factor 3B subunit 1  ali model follow..  10  5..................................................................................................................................................................................................................................................................................................................................................................................................................AKTHEDIEAQIRE------------QGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDY---SSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGR..................................................... 270
22 -10.4005oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model follow..  10  2.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPG--------------------------------VKDPNL--TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAY 230
23 -10.3006eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model follow..  7  105....................................................................................................................................................................................................................................................................................................................................................................................................IERY-KYLKKRKIGI---NELYNVMGINKKKLLA--ISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEA................................................................................................................................................................................................................... 249
24 -10.3004uer_c mol:protein length:812 EIF3C  ali model follow..  9  10...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EYDVASSSSEEDLLSSSEEDLLSSSSSESELDQESDDSFFNESESESEADVDSDDSDAKPYGPDWFKKSEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLLDEMQDVYNKISQAENSDDWLTISNEFDLISRLLVRAQQQNWG-NNTQQADLKNKAVARAYNTTKQRVKKVSRENEDSMAKFRNDPESFDKEPTADLDISANGFTISSSQGNDQAVQEDFFTRLQSRGKKTVNQQSLISTLEELLTVAEKPYEFIM.. 294
25 -9.9505o9z_K mol:protein length:439 Microfibrillar-associated protein 1  ali model follow..  11  134......................................................................................................................................................................................................................................................................................................................................................................................................................EEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEA--RELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYK.................................................................................................................................................... 336
26 -9.7705fyw_W mol:protein length:482 TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA  ali model follow..  15  277......................................................................................................................................................................................................................................................................................................................................................................................................................QERQAEEKRKQNAVPEWH--KQSTIGKTALGRLDNEEEFDPVVTASAMDSINPDNEPAQETSYQNNRTLTEQEMEERENEKTLNDYYAALAKKQAKLNKEEEEEEEEEEDEEEEEEEEMEDVMDDNDETARENALEDEFEDVTDTAGTAKTESNTSNDVKQESINDKTEDAVNATATASGPSANAKPNDGDDDDDDDDDEMDI.............................................................................................................................. 477
27 -9.4901rxt_A mol:protein length:496 Glycylpeptide N-tetradecanoyltransferase 1  ali model follow..  5  3........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVPKLGEEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNE............... 178
28 -9.3105fl8_r mol:protein length:767 Protein SDA1  ali model follow..  10  470........................................................................................................................................................................................................................................................................................................................................................................................................YK-----GSKAKGVNMAAKSLIALYRDVAPEMLKKKDRGKNAAMEVQEAKKGGKDSKRPQFGADNSVQGIAGIELLAKWKKEHGEESENEDADANWEVDVDSEEDDVDGEWVTMDSDKEYDVDMEDSDDEKDNAKGKESDSDLELSDDDDEKEVKDEQEDADIDPEAAFREIASTRILTPADFAKLQELRNEESVAKIMGIHKQDKREELVDASTLTGPIKYKQSREERLQKVLEGREGRDKFGSRRGKRDNMRSTTNREKERRKNFVMSIHKRSVRGKQKMSLRDKQKVLRAHITKQK............................................ 763
29 -9.2405xjc_x mol:protein length:703 Protein CASC3  ali model follow..  8  1........................................................................................................................................................................................................................................................................................................................................................................................................................................MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA--------PRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGR----------------------------DKFREDE------QAPKSRQELIALYGYDIRSAHNPDD...................... 252
30 -9.1802e5n_A mol:protein length:100 RNA polymerase II elongation factor ELL2  ali model follow..  11  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GSSGSSGTISQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANNSKDLSYTLKDY 71
31 -9.1206e11_d mol:protein length:993 Translocon component PTEX150  ali model follow..  8  32.............................................................................................................................................................................................................................................................................................................................................................................................................................................MPTCSMPGNDSDSNDNETGDVDNDKNNELGNANDNNEMNNENAESKNMQGENSNNQEQLNENVHANDDAMYEGTPSSDNPPQENVDANNNEQEYGPPQEEPVSENNVENVEVATDDSGNDNINNNDNFNNNDNYNDNDNFNEEPPSDDGNKNEDELTEGNQSDDKPMNEEEATINEMGKITNPFEDMLKGKVDDMDIGKMMNKDNLQSFLSSLTGNKDGSGKNPLSDMMNIFGVPQTGKEGAEGGVNKENQMK..................................................... 284
32 -9.1205a5t_C mol:protein length:843 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C  ali model follow..  10  1..................................................................................................................................................................................................................................................................................................................................................................................................MKIRDVTKCLE-------EFELLGKAYGKAKSIVDRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAAAFLKKKAEAPSGESRKFLKKME------------DEDEDSEDSEDDEEWDTGSTSSDSDSEEEEGKQTALASRFLKKAPTTEEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGEWERVRGGVPLVKEKPKMFAKGTE----------------------------ITHAVVIKKL-------NEIL---QARGKKGTDRAAQIELLQLLVQIASENNL..... 296
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.