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Query: 5i0q_A mol:protein length:104 M protein, serotype 2.1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GPGSNSKNPVPVKKEAKLSEAELHDKIAALEEEKAELFEKLDKVEEEHKKVEEEHKKDHEKLEKKSEDVERHYLRQLDQEYKEQQERQKNLEELERQSQREVEKLast
1 -79.0005i0q_A mol:protein length:104 M protein, serotype 2.1  ali model  100  1GPGSNSKNPVPVKKEAKLSEAELHDKIAALEEEKAELFEKLDKVEEEHKKVEEEHKKDHEKLEKKSEDVERHYLRQLDQEYKEQQERQKNLEELERQSQREVEK 104
2 -76.3005hyu_A mol:protein length:105 M protein, serotype 2.1  ali model follow..  98  1GPGSNSKNPVPVKKEAKLSEAELHDKIKNLEEEKAELFEKLDKVEEEHKKVEEEHKKDHEKLEKKSEDVERHYLRQLDQEYKEQQERQKNLEELERQSQREVEK 104
3 -16.0005hyp_B mol:protein length:104 M28 protein  ali model follow..  60  54............................ALRGENQDLREKEGKYQDKIKKLEEKEKN----LEKKSEDVERHYLKKLDQEHKE..................... 104
4 -7.6405x6o_G mol:protein length:747 DNA damage checkpoint protein LCD1  ali model follow..  16  43.PTTLEVTTTTLNNKQSKNDNQLVNQLNKAQGEASMLRDKINFLNIEREKEKNIQAVKVNELQVKHL----QELAKLKQELQKLEDEKKFLQMEARGKSKR... 138
5 -7.3404om3_A mol:protein length:147 Transducin-like enhancer protein 1  ali model follow..  28  10.................................KFTIPESLDRIKEEFQFLQAQYKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKR........ 75
6 -7.3104om2_A mol:protein length:163 Transducin-like enhancer protein 1  ali model follow..  28  26.................................KFTIPESLDRIKEEFQFLQAQYKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKR........ 91
7 -7.0505hzp_C mol:protein length:90 M protein, serotype 49  ali model follow..  40  27...................EKELYDQIADLTDKNGEYLERIGELEERQKNLE--------KLEHQSQ-ADKHYQEQAHQEYKQEQEER................ 90
8 -6.8005gjq_Z mol:protein length:908 26S proteasome non-ATPase regulatory subunit 2  ali model follow..  21  2EEGGRDKAPVQPQQSPAAAPGGTDEKPSGKERRDAGDKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRS..................... 84
9 -6.6305gup_c mol:protein length:186 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial  ali model follow..  12  18...ARKVVPLGARTASHVTKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGDYPKLPDRSQQERDPW-----YDWDHPDLRLNWGEPIHWDLD..... 110
10 -6.5904m8m_A mol:protein length:632 GCN4 coiled-coil fused zebrafish PlexinC1  ali model follow..  22  3.........................SVKQLEDKVEELLSKNAHLENEVARLKKLQKQMSKKMNDQLELMESNIRRDIRQGFVDLQTEKSDLID........... 70
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;