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Query: 5i20_A mol:protein length:298 Uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSRSSATLIGFTAILLWSTLALATSSTGAVPPFLLTALTFTIGGAVGIAAGLARGVGLSVLRQPWPVWVHGIGGLFGYHFFYFSALKLAPPAEAGLVAYLWPLLIVLFSAFLPGERLRPAHVAGALMGLAGTVVLLGARAGGFGFAPEYVPGYLAAAACAVIWSVYSVASRRFARVPTEVVAGFCLATAALSALCHILFEPSVWPVGSEWLAVVALGIGPVGIAFYTWDIGMKRGDVRLLGVLSYAAPVLSTLLLVVAGFAAPSGALAIACALIVGGAAVATLLARRLESSGENLYFQLast
1 -111.0005i20_A mol:protein length:298 Uncharacterized protein  ali model  100  1MSRSSATLIGFTAILLWSTLALATSSTGAVPPFLLTALTFTIGGAVGIAAGLARGVGLSVLRQPWPVWVHGIGGLFGYHFFYFSALKLAPPAEAGLVAYLWPLLIVLFSAFLPGERLRPAHVAGALMGLAGTVVLLGARAGGFGFAPEYVPGYLAAAACAVIWSVYSVASRRFARVPTEVVAGFCLATAALSALCHILFEPSVWPVGSEWLAVVALGIGPVGIAFYTWDIGMKRGDVRLLGVLSYAAPVLSTLLLVVAGFAAPSGALAIACALIVGGAAVATLLARRLESSGENLYFQ 298
2 -34.0005y78_A mol:protein length:329 Putative hexose phosphate translocator  ali model follow..  10  12.PTLVHTLKVGFYFFLWIFNIANKRTLNMWKPWVLSTIQLGVGALYCTFLWVLG-TKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSGVALSAATE---------TWTGFITAMISNVAFVTRNITSKFTMVDFIAQNTYALITIISFFMELPFALAIAGVSKAKLFGSIMFCSLFYHLYNEVSY-LCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLYSLAKAKLPSKREKQGTE 324
3 -31.2005oge_A mol:protein length:337 GDP-mannose transporter 1  ali model follow..  12  22..........PISILSYCGSSILMTVTNKF-NFVMLFVQSLVCTITLIILRILGYAKFRSLNKTDAKNWFPISFLLVLMIYTSKALQYLAVPIYTIFKNLTIILIAYGEVLFFGGSVTSMELSSFLLMVLSSVVATWGDEGAAGAVASFNPGYFWMFTNCITSALFVLIMRKRIKNFKDFDTMFYNNVLALPILLLFSFNLTNNFSNDSLTAMIISGVASVGISYCSG-WCVRVTSSTTYSMVGALNKLPIALSGLIFFDAPRNFLSILSIFIGFLSGIIYAVAKQKKQQAQPLRK.. 337
4 -15.3002i68_A mol:protein length:137 Protein emrE  ali model follow..  18  33.....................................................................................................................................................................................................................SVGTIICYCASFWLLAQTLAYIPTGIAAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTPHEFEAYVEQ 118
5 -7.8405oql_B mol:protein length:907 Utp2  ali model follow..  9  517.AKNKERLGNFSQVLI------IAYLGDRFQPHWFPTLEQLSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSDHFHQVCTPAML-AIARYLGQKVPAALSDFAVGIYLSILALQYQDFAKRYVPEMMNFLLNTLCALAPERAKSKLGNFPVHEPPAGIRIKDATNTPIRQLNCGDCLRKDELSPAETSSLQIAILSTATAILKSAADTWH------KLPAFIESFQPALSVAQHLL---TKPNASHLPSSLTSKLNDLASHLSRLLQLSRLSRRPLE 799
6 -7.4803ug9_A mol:protein length:333 Archaeal-type opsin 1, Archaeal-type opsin 2  ali model follow..  11  69.................................NILQWITFALSALCLMFYGYQTWKSTCGWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGTIVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMF-----------------------ILFILGPEGFGVLSVYGSTVGHTIIDLMSNCWGLLGH....................................... 281
7 -7.4305xpd_A mol:protein length:293 sugar transporter  ali model follow..  7  16..........................................................................................GNIISFVLFLAPV--PTFVRICKKKSTEGFQSLPYVSALFNAMLWIYYAGTAFLLITINAFGCVIETIYIVLFVSYANKKTRISTLKVLGLLNFLGFAAIVLVCELLTKGSTREKVLGGICVGFSVSMFAAPLSIMRVVVRTRSVEPFSLSLFLTINAVTWLFYGLAIKDFYVALPNVLGAFLGAVQMILYIIFKYYKTPVAQMKKYT 227
8 -6.7406g1k_A mol:protein length:921 Transient receptor potential cation channel subfamily c member 4a  ali model follow..  8  309..........LLASRWYDEFPGWRRRHWAGKLITCVFIGLMFPLLSLCYLVAPKSRYGLFIRKPFIKFICHTASYLTFLFLLLLASNNPDRQGPKPTTVEWMILPWVLGFIWTEIK-NLMDFVMNSLYLATISLKIVAYVKYSGCKPRTLVAEAVFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIY--------------CLVLLAFANGLNQLYFYYENSEGMTCKGIRCERQNNAFSTLFETLFVGATMFGTYNVISLVVLLNMLIAMMNNSYQHIADHA.... 631
9 -6.6005nf8_A mol:protein length:174 Respiratory supercomplex factor 1, mitochondrial  ali model follow..  14  33....................................................................................................................................................................................................................LVPIGCLLTTGAVILAAQNVRLGNKWKAQYYFRWR-VGLQAATL---------------VALVAGSFIYGTSGKELKAKEEQLKEK 102
10 -6.5906eid_A mol:protein length:315 Archaeal-type opsin 2  ali model follow..  12  53.................................NVLQWLAAGFSILLLMFYAYQTWKSTCGWEEIYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVQWTCPVILIHLSNLTGLSNDYSRRTMGLLVSDIGTIVWGATSAMATGYVKVIFFCLGLCYGANTFFHAAKAYIEGYHTVPKGRCRQVVTGMAWLFFVSWGMF-----------------------ILFILGPEGFGVLSVYGSTVGHTIIDLMSNCWGLLGH....................................... 265
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.