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Query: 5jqy_A mol:protein length:429 Aspartyl/asparaginyl beta-hydroxylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KPKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAILast
1 -125.0005jqy_A mol:protein length:429 Aspartyl/asparaginyl beta-hydroxylase  ali model  100  1KPKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI 429
2 -83.5005apa_A mol:protein length:220 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE  ali model follow..  93  4..........................................................................................................................................................................................................................GVDLGTENLYFQSMRSLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI 214
3 -47.9006b85_J mol:protein length:223 TMHC4_R  ali model follow..  12  1....MSKDTEDSRKIWRTIMLLLVFAILLSAIIWYQITTNPDTSQIATLLSMQLLLIALMLVVIALLLSRQTEQVAESIRR------DVSALAYVMLGLLLSLLNRLSLAAEAYKKAIELDPNDALAWLLLGSVLEKLKRLDEAAEAYKKAIELKPNDASAWKELGKVLEKLGRLDEAAEAYKKAIELDPEDAEAWKELGKVLEKLGRLDEAAEAYKKAIELDPNDLE......................................................................................................................................................................................................... 218
4 -47.0003as8_A mol:protein length:186 Magnetosome protein MamA  ali model follow..  14  1....MGNDDIRQVYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIK-----------VATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELDERSAVELALVPR.................................................................................................................................................................................................................................... 186
5 -47.0003asd_A mol:protein length:200 MamA  ali model follow..  14  1....MGNDDIRQVYYEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK-----------VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE.......................................................................................................................................................................................................................................... 180
6 -46.7003asg_A mol:protein length:186 MamA  ali model follow..  13  1....MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK-----------VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR.................................................................................................................................................................................................................................... 186
7 -46.7002pl2_A mol:protein length:217 Hypothetical conserved protein TTC0263  ali model follow..  15  2........QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA.................................................................................................................................................................................................................... 209
8 -46.3004xi0_A mol:protein length:202 Magnetosome protein MamA  ali model follow..  15  2......AMGDKAKLYRNISQRCLRRGSPEEALRYLKEWARHEKNDPEPLYQMGIALANLGDYQRAVTVFDKVLKLRPN-----------HFMASYRKGAVLLKIKQYKLALPVLEAVVAAAPADARAYYLLGLAYDGDEQLEKGIEAMQKAVDLDPEEIKYHQHLGFMNVRKDDHKTAAEHFTKVMELERSQDSDEEELALVPRGSS.............................................................................................................................................................................................................................. 191
9 -46.0005lfm_A mol:protein length:202 Magnetosome protein MamA  ali model follow..  14  2......AMGDKAKLFRNISQRCLRRGSPEEALRFLKLWARHEKNDPEPLYQMGIALANLGDYQRAVTVFDKVLKLRPN-----------HFMASYRKGAVLLKIKQYKLALPVLEAVVAAAPADARAYYLLGLAYDGDEQLEKGIEAMQKAVDLDPEEIKYHQHLGFMNVRKDDHKTAAEHFTKVMELERSQDSDEEELALVPRGSS.............................................................................................................................................................................................................................. 191
10 -45.9003vtx_A mol:protein length:184 MamA  ali model follow..  18  1.......MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE-----------AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA............................................................................................................................................................................................................................................ 175
11 -43.6002q7f_A mol:protein length:243 YrrB protein  ali model follow..  11  3.SSSSGLVPRGSHMASMTGGQQSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT-----------AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL.................................................................................................................................................................................................. 229
12 -43.4003cv0_A mol:protein length:327 Peroxisome targeting signal 1 receptor PEX5  ali model follow..  14  45.EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS................................................................................................................................................................................................... 281
13 -43.3002ho1_A mol:protein length:252 Type 4 fimbrial biogenesis protein PilF  ali model follow..  15  21.LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-----------NARVLNNYGGFLYEQKRYEEAYQRLLEASQLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA................................................................................................................................................................................................... 244
14 -43.2003cvq_A mol:protein length:327 Peroxisome targeting signal 1 receptor PEX5  ali model follow..  14  45.EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARALDPADIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS................................................................................................................................................................................................... 281
15 -42.9002fo7_A mol:protein length:136 SYNTHETIC CONSENSUS TPR PROTEIN  ali model follow..  19  1...........AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS............................................................................................................................................................................................................................................................................... 136
16 -42.8003urz_A mol:protein length:208 Uncharacterized protein  ali model follow..  12  2.........QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYELALAYKKNRNYDKAYLFYKELLQKAPNNVD-----------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEKEVNR.......................................................................................................................................................................................................................... 208
17 -42.5002vq2_A mol:protein length:225 PUTATIVE FIMBRIAL BIOGENESIS AND TWITCHING MOTILITY PROTEIN  ali model follow..  10  2.....EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-----------SAEINNNYGWFLGRLNRPAESMAYFDKALATYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN.............................................................................................................................................................................................................. 211
18 -41.9002fi7_A mol:protein length:265 type 4 fimbrial biogenesis protein PilF  ali model follow..  15  34.LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-----------NARVLNNYGGFLYEQKRYEEAYQRLLEASQLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA................................................................................................................................................................................................... 257
19 -41.3003r9a_B mol:protein length:328 Peroxisomal targeting signal 1 receptor  ali model follow..  13  48.EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYFLAAVRLDPTSID--PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRSTLRLALSMLGQSDAYGAADARDLSTLLT............................................................................................................................................................................................................ 322
20 -41.0004r7s_A mol:protein length:257 Tetratricopeptide repeat protein  ali model follow..  10  28.KAAMRKEPANYALLTNLGTIQRRQGKLQEALISYTSALSGHTKNITILENRASLYTELGETEKALNDYNTLLIENPE-----------HQEALYCRGLLYIQLQNYMWAEQDFDKILEVNEKSVRARLGHAILEKMRGNYDESERIFNYLISEMPRDWILYEGRADLYFMMGKNARAMADIEKVFTESEPTANLYVLRGKIKLAQYEKERAALDFKKAESMGYNKEVIKELLKLTM................................................................................................................................................................................................ 255
21 -40.7003uq3_A mol:protein length:258 Heat shock protein STI1  ali model follow..  14  22.DEAIEHYNKAWEYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL------------TEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI.................................................................................................................................................................................................. 249
22 -39.7001fch_A mol:protein length:368 PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR  ali model follow..  13  88.EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYFLAAVRLDPTSID--PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPWSTLRLALSMLGQSDAYGAADARDLSTLLTMF.......................................................................................................................................................................................................... 364
23 -39.5005lwv_A mol:protein length:749 Host cell factor 1,UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit  ali model follow..  10  14.ATTATGGGTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD-----------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLK-DFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQ--DGIHILVNMNGYTKGARNELFALRPAPIQAM--WLGYPGTSGALFMDYIITD---QETSPAEVAEQYSEKLAYMPHTF................................... 400
24 -38.9004p7w_A mol:protein length:292 L-proline cis-4-hydroxylase  ali model follow..  14  20...................................................................................................................................................................................................................................................................VVQLDQRRLTDDLAVLAKSN-----SSEYSDFACGRWEFCMLRNQSALATPLGQSLPYLNELLDNHFD--RDSIRYARIIRISENACIIPHRDLEGKFIRVHLVLDTNEK-CSNTEENNIFHMGRGEIWFLDASLPHSAGCFSPTPRLHLVVDIEGTRSLEE........ 191
25 -38.3004eqf_A mol:protein length:365 PEX5-related protein  ali model follow..  11  89.EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN............................................................................................................................................................................................................................... 328
26 -38.2004i17_A mol:protein length:228 hypothetical protein  ali model follow..  13  24.AVAFEKYSEYLKTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL----YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKTDALYSLGVLF-----YNNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMIK.............................................................................................................................................................................................................................. 228
27 -38.0001w3b_A mol:protein length:388 UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110  ali model follow..  13  57.TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYYLKAIETQPN----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA................................................................................................................................................................................ 331
28 -37.9005wql_B mol:protein length:278 Lipoprotein NlpI  ali model follow..  11  32.EQILASDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ.................................................................................................................................................................................................................. 278
29 -37.7004ga0_A mol:protein length:150 E3 SUMO-protein ligase RanBP2  ali model follow..  10  2................PLGSMRRSKADVERYIASVQGSTPSPRQKSMKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK-----------AHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTGRAKYWLERAAKLFPGSPAIYKLKEQLLDCEGE............................................................................................................................................................................................................................................................... 149
30 -37.7004ga2_A mol:protein length:150 E3 SUMO-PROTEIN LIGASE RANBP2  ali model follow..  10  2................PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK-----------AHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE............................................................................................................................................................................................................................................................... 149
31 -37.5005lvv_A mol:protein length:749 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit,UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit  ali model follow..  13  11.KTSVTLGGTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD-----------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAER............................................................................................................................................................................................................... 223
32 -37.2005hrz_A mol:protein length:128 TPR domain protein 1na0C3_3  ali model follow..  17  2.........NLAEKMYKAGNAMYRKGQYTIAIIAYTLALLKDPNNAEAWYNLGNAAYKKGEYDEAIEAYQKALELDPN-----------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQGL................................................................................................................................................................................................................................................................................................. 121
33 -37.0004ga1_A mol:protein length:150 E3 SUMO-PROTEIN LIGASE RANBP2  ali model follow..  11  2................PLGSMRRSKADVERYIASVQGSTPSPRQKSMKGFYFAKLYMEAKEYDLAKKYICTYINVQERDPK-----------AHRFLGLLYELEENTDKAVECYRRSVELNPMQKDLVLKIAELLCKNDVTDGAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE............................................................................................................................................................................................................................................................... 149
34 -36.8002wqh_A mol:protein length:125 CTPR3Y3  ali model follow..  18  1..GAMD--GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE-----------AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG.................................................................................................................................................................................................................................................................................................. 125
35 -36.6005fzq_A mol:protein length:131 DESIGNED TPR PROTEIN  ali model follow..  13  1.......MGNSIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPNNIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPNNIK-----------TLSNLAVLLAQEGKAEEAIKYMRKAVSLIDKAAKGSTLHNAAARRKSRLMRKVQKL......................................................................................................................................................................................................................................................................................... 131
36 -36.6005a01_A mol:protein length:710 O-GLYCOSYLTRANSFERASE  ali model follow..  11  2......PCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVLQQQGKLKEALMHYKEAIRIQPTFAD-----------AYSNMGNTLKELQDVSGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDIRMKKLVSIVTEQLEKNRLPSVHPHHSMLYPLTHDCRKAIAARHANLCLEKVHVLHKKPYNFLKKL--DFGNHPTSHLMQSVPGLHDRSKVEIFCYALSPDDGTTFRHKISRESENFVDLSQIPCNGKAADKIFN--DGIHILVNMNGYTKGARNEIFALRPAP-------------IQVMWLGYPGTSGASFM--------------YIITDSVTSPLELAYQYSEKLSYM.................. 378
37 -36.6003sz7_A mol:protein length:164 Hsc70 cochaperone (SGT)  ali model follow..  8  2.PRSMAPTPES-DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-----------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-----LETTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSLAS......................................................................................................................................................................................................................................................... 163
38 -36.3001na0_A mol:protein length:125 designed protein CTPR3  ali model follow..  16  2...AMD--GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG.................................................................................................................................................................................................................................................................................................. 125
39 -36.3003kd7_A mol:protein length:125 CTPR390  ali model follow..  16  1..GAMD--GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN-----------NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG.................................................................................................................................................................................................................................................................................................. 125
40 -36.2004j8d_A mol:protein length:175 Hsc70-interacting protein  ali model follow..  11  2......ARGGSDLEIDNEGVIEADTDAPQEMGDENAEITEAMMDEANEKKGAAIDALNDGELQKAIDLFTDAIKLNPR-----------LAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLRE-----VQPRAQKIAEHRRKYERKREERE........................................................................................................................................................................................................................................... 173
41 -36.1003u4t_A mol:protein length:272 TPR repeat-containing protein  ali model follow..  18  2..........NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIELAIQQYQAAVDRDTTRLD----MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQTKQGLAKPYYEKLIEVCAPGIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL................................................................................................................................................................................................ 265
42 -35.8001e5r_A mol:protein length:290 PROLINE OXIDASE  ali model follow..  12  8...................................................................................................................................................................................................................................................................KIELDQTRLAPDLAYLAAVP----VEEEYDEFSNGFWKHVPLWNASAQPTAHVEHVPYLKEIVTTVFDGTHLQ---MARSRNLKNAIVIPHRREVDRYFRTFMVLEDSPL-AFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLCVDFAFDGPFDEKEIFADAT 191
43 -35.8002hr2_A mol:protein length:159 Hypothetical protein  ali model follow..  11  1...GMKPLKEVVGAYLALSDAQLVAGEYDEAAANCRRAMEISHTMPFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA.......................................................................................................................................................................................................................................................................................... 158
44 -35.3002gw1_A mol:protein length:514 Mitochondrial precursor proteins import receptor  ali model follow..  10  254.LGAHEDIKKAIESYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-----------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQR......................................................................................................................................................................................... 500
45 -35.2003ieg_A mol:protein length:359 DnaJ homolog subfamily C member 3  ali model follow..  9  27.HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG.................................................................................................................................................................................................................. 248
46 -35.0002vyi_A mol:protein length:131 SGTA PROTEIN  ali model follow..  13  2.PLGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-----------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA................................................................................................................................................................................................................................................................................................ 130
47 -34.6005xw7_A mol:protein length:260 Cellulose synthase subunit C  ali model follow..  9  1...GHMDEPTAQQQLLSQVRLGEATKREDLVRQSLYRLELIDPDNPDVIAARFRYLLRQGDNAGAQKQLDRMKQLAPDSAAYKSSVTSMTGRQALQQARLQATTGHVPEALAAYDALFKGNPPEGDLAVEWALVAKVPARRSEAITQLKALNARNPGNAALQNSLAQLLFGEGRDAEAYAVLEQMAKSSAGREAAAGLWYQQIQRMPVSDASVKALQRFLTVFSS............................................................................................................................................................................................................ 228
48 -34.3001zu2_A mol:protein length:158 Mitochondrial import receptor subunit TOM20-3  ali model follow..  10  3............LGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-----------------------------------AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFANFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGG.................................................................................................................................................................................................................................................... 151
49 -34.2002y4t_A mol:protein length:450 DNAJ HOMOLOG SUBFAMILY C MEMBER 3  ali model follow..  7  44.HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM----------------EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH-----PDNF---KAEKKFIDIAAAKEVLSDPEMR-KKFDDG........................... 444
50 -34.2004ui9_F mol:protein length:824 CELL DIVISION CYCLE PROTEIN 27 HOMOLOG  ali model follow..  11  557.KDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAEMHFQKALDINPQSS----VLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQ................................................................................................................................................................................................ 815
51 -34.1001wm5_A mol:protein length:208 Neutrophil cytosol factor 2  ali model follow..  9  2..AMGSMSLVEAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-----------LAVAYFQRGMLYYQTEKYDLAIKDLKEALQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIVGKLFRPNERQVAQLAKKDYLGKAT............................................................................................................................................................................................................................... 208
52 -34.0006bq1_B mol:protein length:863 Tetratricopeptide repeat protein 7B  ali model follow..  13  525.QRAHSLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQGDDANSLHLLALLLSAQKHYHDALNIIDEALLTCKHMLQIWKSCYNLLAQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVLYMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRLALILHQLGRYSLAEKILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSPAVPFTIIPRVL............................................................................................................................................................................................... 863
53 -34.0004rg6_A mol:protein length:560 Cell division cycle protein 27 homolog  ali model follow..  11  327.QRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSV-----------LLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQ................................................................................................................................................................................................ 551
54 -34.0005aio_A mol:protein length:448 TRANSCRIPTION FACTOR TAU 131 KDA SUBUNIT  ali model follow..  11  7........DPEVAQLLSQANEAFVRNDLQVAERLFNEVIKKDARNFAAYETLGDIYQLQGRLNDCCNSWFLAAHLNASDWEF-----------WKIVAILSADLDHVRQAIYCFSRVISLNPMEWESIYRRSMLYKKTGQLARALDGFQRLYMYNPYDANILRELAILYVDYDRIEDSIELYMKVFNANVERREAILAALENALDSSDEESAAEGEDADEKEPLEQDEDRQMFPDINWKKIDAKYKCIPFDWSSLNILAELFLKLAVSEVDGIKTIKK....................................................................................................................................................... 265
55 -33.7002lni_A mol:protein length:133 Stress-induced-phosphoprotein 1  ali model follow..  9  2...GSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-----------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN................................................................................................................................................................................................................................................................................................. 127
56 -33.7002xpi_A mol:protein length:597 ANAPHASE-PROMOTING COMPLEX SUBUNIT CUT9  ali model follow..  15  363.NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL................................................................................................................................................................................................ 594
57 -33.6002e2e_A mol:protein length:177 Formate-dependent nitrite reductase complex nrfG subunit  ali model follow..  11  4.....QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE-----------LYAALATVLYYQASTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRS........................................................................................................................................................................................................................................................... 168
58 -33.6005khu_F mol:protein length:824 Cell division cycle protein 27 homolog  ali model follow..  11  591.QRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQ-----------SSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQL............................................................................................................................................................................................... 816
59 -33.2006fd7_A mol:protein length:127 RNA polymerase II-associated protein 3  ali model follow..  16  1.......GPHMALVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRS-----------YTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENS............................................................................................................................................................................................................................................................................................. 126
60 -33.2005m72_A mol:protein length:160 Signal recognition particle subunit SRP72  ali model follow..  13  2..........SVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS-------FKEALNVINTHTKVLANNSLSF-----EKAYCEYRLNRIENALKTIESANQQTDK---LKELYGQVLYRLERYDECLAVYRDLVRNSQDDEERKTNLSAVVAAQSNWEKVVPG........................................................................................................................................................................................................................................................ 159
61 -33.1001hh8_A mol:protein length:213 NEUTROPHIL CYTOSOL FACTOR 2  ali model follow..  10  23.KGALDAFDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-----------------------------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKYEPVVIPVGRLFRPNERQVAQLAKKDYLGKA................................................................................................................................................................................................................................ 202
62 -33.1004gco_A mol:protein length:126 Protein STI-1  ali model follow..  13  1.................................SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR................................................................................................................................................................................................................................................................... 126
63 -33.0003fp2_A mol:protein length:537 TPR repeat-containing protein YHR117W  ali model follow..  13  267.QESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-----------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKR......................................................................................................................................................................................... 513
64 -33.0005khu_J mol:protein length:620 Cell division cycle protein 16 homolog  ali model follow..  11  358.FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADDFREFEVEKQTAEETGLEPLEEERKTPDSRPSLEETFEIEMNESDMMLETSMSDHST............................................................................................................................................................................................. 620
65 -32.9005lyn_A mol:protein length:133 Small glutamine-rich tetratricopeptide repeat-containing protein 2  ali model follow..  14  2...SMAETKAKAEDLKMQGNKAMANKDYELAINKYTEAIKVLPTNAIYYANRAAAHSSLKEYDQAVKDAESAISIDPS-----------YFRGYSRLGFAKYAQGKPEEALEAYKKVLDIEGDNATEAMKRD--------YESAKKKVEQSLNL................................................................................................................................................................................................................................................................................... 133
66 -32.9005wrv_B mol:protein length:163 Signal recognition particle subunit SRP72  ali model follow..  12  2..ASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS-------FKEALNVINTHTKVLANNSLSF-----EKAYCEYRLNRIENALKTIESANQQTDK---LKELYGQVLYRLERYDECLAVYRDLVRNSQDDEERKTNLSAVVAAQSNWEK............................................................................................................................................................................................................................................................ 163
67 -32.9004nrh_B mol:protein length:178 Chaperone SycD  ali model follow..  8  1..................GSHMASMSHLNYLLEKI--AASSKEDFPFPDDLESYLEGYVPDKNIALDTYQKIFKISSEDLE-----------KVYKEGYHAYLDKDYAKSITVFRWLVFFNPFVSKFWFSLGASLHMSEQYSQALHAYGVTAVLRDKDPYPHYYAYICYTLTNEHEEAEKALEMAWVRAQHKPL-YNELKEEILDIRKHK........................................................................................................................................................................................................................... 178
68 -32.9005lyp_A mol:protein length:140 Small glutamine-rich tetratricopeptide repeat-containing protein 2  ali model follow..  13  4..EDDAETKAKAEDLKMQGNKAMANKDYELAINKYTEAIKVLPTNAIYYANRAAAHSSLKEYDQAVKDAESAISIDPS-----------YFRGYSRLGFAKYAQGKPEEALEAYKKVLDIEGDNATEAMKRD--------YESAKKKVEQSLNLEKT................................................................................................................................................................................................................................................................................ 139
69 -32.9001hxi_A mol:protein length:121 PEROXISOME TARGETING SIGNAL 1 RECEPTOR PEX5  ali model follow..  10  1.............................QNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE-----------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL............................................................................................................................................................................................................................................................................ 121
70 -32.9003fwv_A mol:protein length:128 Hsc70/Hsp90-organizing protein  ali model follow..  11  1........SKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE----NREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPKVLKKCQQAEKILKEQ................................................................................................................................................................................................................................................................................................. 128
71 -32.8004hnw_A mol:protein length:863 N-terminal acetyltransferase A complex subunit NAT1  ali model follow..  10  10.KPAAKIALKKENDQFLEALKLYEGKQYKKSLKLLDAILKKDGSHVDSLALKGLDLYSVGEKDDAASYVANAIRKIEG--------ASASPICCHVLGIYMRNTKEYKESIKWFTAALNNGSTNKQIYRDLATLQSQIGDFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERQQAINTLSQFEKLAEDKFGLLERKATIYMKLGQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGIQGDNKLKKALYGKLEQ-VLPQLERGVPATFSNVKPLYQRRKSKVSPLLEKIVLD--WTNYYLSQHFLFLKDFPKAQEYIDAALDHTPTLV---------EFYILKARILKHLGLMDTAAGI-------EEGRQLDLQDRFINCKTVKYFLIDKAFTKNDDSVNGIKDLHLVEASW............... 498
72 -32.8004gcn_A mol:protein length:127 Protein STI-1  ali model follow..  15  2.....NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE----TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELE....................................................................................................................................................................................................................................................................................................... 126
73 -32.8005zyq_A mol:protein length:320 RNA polymerase-associated protein CTR9 homolog,RNA polymerase II-associated factor 1 homolog  ali model follow..  13  32..SILKQEHTQLHIWIALALEYYKQGKTEEFVKLLEAARIDEKDQMTCLDTLAAYYVQQARKEKNKDLITQATLLYTMADKIIMYDQNHL---LGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGALAYYKKALRTNPGCAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLELNNKEADGSENLYFQSGSRFVQYKATSLEKQ................................................................................................................................................................................................... 273
74 -32.6005xi8_A mol:protein length:175 Beta-barrel assembly-enhancing protease  ali model follow..  11  1..........GSAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPV------------LQLNLANAYLQGGQPQEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYAL-----------------AGRLDQAISLMSSASSQVKLGSLQQARYDARIDQLRQLQERFK....................................................................................................................................................................................................................... 175
75 -32.6004abn_A mol:protein length:474 TETRATRICOPEPTIDE REPEAT PROTEIN 5  ali model follow..  13  86.EEVLGSAQVEAQALMLKGKALNVTPDYPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN----SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLKISQQALSAYAQAEKVDRSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPA................................................................................................................................................................................................... 327
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.