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Query: 5k52_A mol:protein length:265 Aldehyde decarbonylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SSGLVPRGSHMASMTGGQQMGRGSEFMPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAAALast
1 -80.3005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model  100  1SSGLVPRGSHMASMTGGQQMGRGSEFMPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAAA 259
2 -73.4005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  73  1SSGLVPRGSHMASMTGGQQMGRGSEFMPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA... 256
3 -67.1004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  70  1..........................MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAG... 230
4 -66.9004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  65  20...............................SEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS... 244
5 -66.9004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  65  20...............................SEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS... 244
6 -66.8004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  71  1..........................MPQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAA... 230
7 -66.4005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  61  8................................SAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLASAP. 233
8 -65.8005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  66  7...............................QSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIGAPG 234
9 -64.7005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  37  2.................................TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAARMVG 227
10 -45.2004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  10  7..................................SVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED-VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNRGAINFWFPRAVEMLHMTWSLNETHLRDLNITKNDLINGYIKTTNEELKKCGYNEVNYDKALHYNVVLK.. 235
11 -41.6005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  10  2................................DKNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVR-LPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-----VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI.................... 209
12 -39.6003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  11  23....................................DWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAMLQDAINRFWWPALMMFGARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTE...... 252
13 -38.2004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  10  26....................................DWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFWWPALMMFGPNWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPD............ 249
14 -37.5004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  13  51...............................DQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALAEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERLFIRYMDELWPHVIGYVDYLTERTYALEIDYDLLRHYVIKQFNLRKKQISRTK................ 295
15 -37.0003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  12  1......................................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLANIGLDLLGQARNFLSYAAELAGEGDEDTLARDERQFSNLLLVEQPNGNFAD-TIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVKMQQAINKLWRFTAELFDADEIDIALIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHT 231
16 -36.0004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  14  2.........................................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLANIGLDLLGQARNFLSYAAELNGCGDEDTLGRDERQYSNLLLVEQPNGNFAD-TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGELSNRKMQQAVDNLWRFTGELFLADEVELSLIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQGLHS 229
17 -35.8003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  13  37.......................PADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELSPAAQVRASVTYNHIVEGMALTGYYAWHKICVPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEDQPPFDLSKDDFLQYSTDKGMRRFGTISNAR................ 284
18 -34.7002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  9  109....................................TRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNLQKWIDHWEPQAYEALKPLAEAS-----VGIDGLNEARAELSARLKKFELQSRGVSA........... 333
19 -34.5001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  15  88....................................NKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGYLFEYGSKNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKRDAY.... 335
20 -32.5001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  14  65........KEYARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQEQKNGYLAQVLDEIRHTHQCAYVNYYFAKN-RTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAH. 343
21 -32.4003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  12  83....................................ENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREAQKKVDMAIWRAWRLFAVLTGPVMDYYTPKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELH. 328
22 -32.3001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  12  83....................................DRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKGNRNMATFGMMDENRHGQIQLYFPYANVKRSRK-TNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDAQQMVDVAIWRSWKLFSVLTGPIMDYYTPKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETH. 328
23 -31.2001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  9  111....................................QMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPAITNCATYETADHLRWLTHTAYRTRELANCYPDVENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNR--EVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL.................. 330
24 -30.4001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  11  55....................................DPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRA---EKYTQVETLVYMAFYERCGAVFCRNLAAQIEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLYRDKLQNVADAGIFGKPQLRQLISDR---ITAWGLAGEPSLKQFVTG...... 275
25 -30.2002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  14  48SQWEDPFRDAYWKYQAEKEKKLYAIFDAFAQNNGHQNISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGARVACQMQAIDELRHSQTQQHAMSHYNKHFNG-DRVWYLSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKEVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHHLS. 332
26 -29.3003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  8  108....................................QMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPAISNCCILQTADSLRWLTHTAYRTHELSLTYPDAEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNHIEGWIEKWRPLADRAAEAYLSMLSSDILPAQ--YLERSTSLRASILTV.................... 327
27 -29.3003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  12  40.......................AEAVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK................ 275
28 -29.1003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  10  91............................EHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNE 358
29 -28.1002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  11  64.......................AEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVQNIVKEAVEVERSFICESLPC-DLIGMNSRLMSQYIEFVADRLLECLGSPK................ 298
30 -28.0002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  14  64.......................AEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEEVREIIVDAVKIEQEFLTEALPV-GLIGMNCILMKQYIEFVADRLLVELGFSK................ 299
31 -27.8002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  10  76.......................PFAEHPLFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISERPPTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARTIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFSALLLELNAAGIRGAERLVRDFSGARKMVEQLGLDAVDFDFPERPDWSPHTP 344
32 -27.5004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  16  4.........................HKKEPIHVVNIGEANPRFAQLLLEQFG-GATGELSAALQYWVQSFHVAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKS-SQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSDEGTKQTLVHLLTREISHTQMFMKALDSLGKL........................................................................ 180
33 -27.1006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  14  60....................................AHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFELDVPVIRRRVDYLSNVLDNRKYMVSLILFSILIENVLFSQFAILLSFTRKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPV................ 290
34 -26.8002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  12  47.......................AEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFFSIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPEERVREIIINAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFSK................ 282
35 -26.3005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  11  45.......................PFRGHPIWERLSDETRSRLLSWGWVAYNRNTVLIEQRIANPAFELVLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFTTWESIVAFEGVPGWEHLVQDHSGIHTLLTEMDV.................. 295
36 -26.2002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  14  21..............................................LEELLGMAIKAEIGAREFYKSLAEKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE....................................................................... 165
37 -26.1004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  12  28.......................EEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNYYRRLLKPEVTKKELYMAMVASVFLESYLF-PLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEP................ 272
38 -25.8002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  55.......................PFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNNPTPKTFLESIVYDVILEGLNFYFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWKIPGINPEDMETYISFIANKRAVQLGMEK................ 300
39 -25.6003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  14  33.......................PEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENKAQIIQQHYRGDDPLKKKIASVFLESFLF-PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISEELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEP................ 269
40 -25.4001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  13  33.......................PEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENKAQIILAHYVSDEPLKKKIASVFLESFLF-PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSEELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEA................ 269
41 -25.4001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  15  38.......................PEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEERKAEIVLQSYRGDEPLKRKVASTLLESFLF-PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEA................ 274
42 -25.4004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  16  82....................................DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFF-ILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYGILGLRASMFIDYVQHIADRRLERIGLKP................ 321
43 -25.3002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  12  23...........................................IKKLVDKLVKATAAEFTTYYYYTILRMHLEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKD-PKEILKVLLEAEQCAIRTWKEVCDMTDPRTYDLAQRILQEEIEHEAWFLELLYGR........................................................................... 170
44 -25.3001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  12  43.......................PEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPTMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENKAKIIMSYYNGDDPLKKKVASTLLESFLF-PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEG................ 279
45 -25.0003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  14  66.......................AEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEEVREIIVDAVKIEQEFLTEALPV-GLIGMNCILMKQYIEFVADRLLVELGFSK................ 301
46 -25.0002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  15  4............................................YTLAEFLAHAIALETEAAERYVELADMMLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSDPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSI...................................................................... 154
47 -25.0001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  18  1...................................MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCDIVTARLFERIIEEEQAHLTYYENIGSHI........................................................................... 146
48 -25.0004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  32.......................DTRIPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNKAEIINEIYLNGTALEKKIASVFLETFLF-PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDP................ 268
49 -24.9001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  12  59.......................AEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAANDDSLYAERLVAFAAKEGIFQAMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIEKIITEAVEIEKEYYSNSLPV-EKFGMDLKSIHTYIEFVADGLLQGFGNEK................ 293
50 -24.9002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  10  65.......................AEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLRIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKEIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK................ 299
51 -24.8003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  14  10........................................ARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRLGRIAVVEFRHYELVSARLEAMGIDAEDAM--LPFQAAVDYFHSRTRPADWYESLMKAYVID-TVSADFYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPRRLALWGRRLLGEALTQAQRVSYEHAFLG-LVSGLIAGLAEKHSKRMTQLGLTG................ 225
52 -24.6002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  17  5........................................SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLR-------------VKQAEDVREMLEYARQSEYETIKRYEKRKEQAMTELVVKLEDMIADETNHMEELDRLLNDK........................................................................... 144
53 -24.5001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  14  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRF-SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
54 -24.4006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  10  59.......................PEKIPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEAHEWVINTRAKALIPYYVNDDPLKSKVAAALMPGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSAEMKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYDS................ 295
55 -24.4006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  10  63.......................PENIPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQILTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEANEALQARPKALIPFYTADDPLKSKIAAALM-PGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYES................ 299
56 -24.1001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  17  1......................................MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLNSDAQKTVKKIIDQEKEHLRKLLEMKRES........................................................................... 150
57 -23.8001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  11  105.......................AEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF-IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQVREIITNAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFNK................ 340
58 -23.8004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  14  1..................................GPGSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKANDIAALFRSTAEGETGHAHGHLEYLEAVGDPA-----------------TGLPFGTSRQNLQSAIAGETHEYTDMYPGMAKTAFEEIANWFETLAKAERSHANRYTKALDGL........................................................................... 142
59 -23.4001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  15  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRF-SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
60 -23.4001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  14  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRY-SFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
61 -23.3001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  14  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF-SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
62 -23.1001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  14  138....................................NRMNENERFFISRVLAFFAASDGIVNENLVENFSQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKEHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAVEKIVTEAVEIEQRYFLDALPV-ALLGMNADLMNQYVEFVADRLLVAFGNKK................ 360
63 -23.0003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  15  4...........................................DAKVIEYLNAALRSELTAVSQYWLHYRLQGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCDYPSKMLFEELIADEEGHIDYLETQIDLM........................................................................... 141
64 -22.8003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  17  4...........................................DPDVLKLLNEQLTSELTAINQYFLHSKMQTELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCDATSARLLEQILADEETHIDYLETQLQLM........................................................................... 141
65 -22.8002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  18  8...........................................DPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................... 145
66 -22.8005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  18  4...........................................DPEVIEFLNEQLTAELTAINQYFLHAKLQTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMDITSANVFEAILADEEHHIDYLETQLDLI........................................................................... 141
67 -22.8002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  16  10......................................QGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK------LARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTDYTTCDIAKHILAEEEEHEQDLQDYLTDIARMKESFLKK................................................................. 170
68 -22.7003sid_A mol:protein length:180 Symerythrin  ali model follow..  23  24............................................NNTDANAASSIEVEYECDCMYPTFAEIAPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA--STIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLANMEVATAFEAIVKSETKHANWVKRALENLLEVA....................................................................... 180
69 -22.5001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  16  4...........................................DAKVIEFLNAALRSELTAISQYWVHFRLQAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP------------LRIGEGPRETLECDLAGEHDALKLYREARDYCDIVSKNIFESLITDEEGHVDFLETQISLY........................................................................... 141
70 -22.4003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  16  19...........................................EPKVIERLNEALFLELGAVNQYWLHYRLLTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP------------LRIGQNVKEVLEADLKGEYDARASYKESREICDYVSKQLFDELLADEEGHIDFLETQLDLL........................................................................... 156
71 -22.4004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  17  4...........................................DQKVIEYLNRGLRSELTAVSQYWLHYRMLKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP------------LRIGQTVKEVLESDLAAEREARALYQEGAAYADFPSKNLFEELMGDEEHHIDFLETQLDLV........................................................................... 141
72 -22.4003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  17  1......................................MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................... 143
73 -22.3002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  12  9.............................QIELPMPKEQDPNAAAAVQALLG--RFGEMSTLMNYMYQSKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPESAPLGFAKDVRN-LILDLLHNFFLEVAARTHKLRVYEMTNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKM................................................................... 207
74 -22.2001jku_A mol:protein length:266 pseudocatalase  ali model follow..  10  4.........................HTRKLQYNAKPDRSDPIMARRLQESLG--QWGETTGMMSYLS-STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGI..................................................................... 198
75 -22.1005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  18  4...........................................DKTVIQFLNKQLTNELTAINQYFLHARMLDKLGKHEYEESIGEMKHADRLIARIFMLDGLPNLQDLHK------------LLIGEDVPELLACDLKLEQAAHATVREAIAHCDYVSRDLFQDILDDTEEHIDYLETQIDLI........................................................................... 141
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.