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Query: 5k53_A mol:protein length:262 aldehyde deformylating oxygenase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SSGLVPRGSHMASMTGGQQMGRGSEFMPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAALast
1 -83.0005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model  100  1SSGLVPRGSHMASMTGGQQMGRGSEFMPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA 256
2 -73.4005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  73  1SSGLVPRGSHMASMTGGQQMGRGSEFMPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAA 256
3 -68.9004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  61  24...................................PDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS 244
4 -68.9004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  60  20...............................SEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS 244
5 -68.5004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  69  1..........................MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAG 230
6 -68.4004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  75  1..........................MPQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAA 230
7 -68.3005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  77  5.............................TDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIG 231
8 -67.3005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  64  9.................................AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLAS 231
9 -65.5005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  39  2.................................TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAAR 224
10 -45.7004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  13  6.................................RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED-VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK--NRMQGAINFWFPRAVEMLHMTWSLLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDK........ 226
11 -42.1005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  9  3.................................KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVR-LPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-----VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI................. 209
12 -40.6003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  13  20.................................EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAEAQKQMLQDAINRFWWPALMMFGPNDDNWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTE... 252
13 -39.1004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  12  23.................................EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQAQRQMLQDAINRFWWPALMMFGPNDDNWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPD......... 249
14 -38.8004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  12  34..............KAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALAEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDEELFIRYMDELWPHVIGYVDYLTERTYALEIDYDLLRHYVIKQFNLRKKQISRTK............. 295
15 -36.9003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  12  29..............GGNAKFW-HPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELSPAAQVRASVTYNHIVEGMALTGYYAWHKICVPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDTVFETRMNELIPLALRLIEEGFALYPPFDLSKDDFLQYSTDKGMRRFGTISNAR............. 284
16 -36.3003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  11  1......................................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLARDERQFSNLLLVEQPNGNFAD-TIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGDVSGQKMQQAINKLWRFTAELFDADEIDEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGG... 225
17 -35.3004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  13  2.........................................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLARDERQYSNLLLVEQPNGNFAD-TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGELSNRKMQQAVDNLWRFTGELFLADEVELSLIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQG 226
18 -34.5002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  10  109....................................TRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATATSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNLQKWIDHWEPQAYEALKPLAEAS-----VGIDGLNEARAELSARLKKFELQSRGVS......... 332
19 -33.1001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  13  88....................................NKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGYLFEYGSKNRWVSEDWGGIWIGRLGKYGVESPR........... 325
20 -31.0001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  13  66.........EYARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVVYEDWGGIWIGRLGKYGVESPR........... 330
21 -31.0003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  71........................SVKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPKEFMYEWIIGQFERSLIDLGLDKPWYWD........ 318
22 -30.7001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  7  111....................................QMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTNCATYETADHLRWLTHTAYRTRELANCYPDVENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNR--EVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL............... 330
23 -30.4001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  12  83....................................DRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDL.. 324
24 -30.0003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  10  40.......................AEAVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK............. 275
25 -29.4003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  12  94...............................GQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVLQKYLNFHYSVTSDLYGAEISSNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSA 355
26 -29.4002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  13  17..........................................ADFSLEELLGMAIKAEIGAREFYKSLAEKIKILKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE.................................................................... 165
27 -29.0003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  7  75.....PDQLVYRTYMQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASSNCCILQTADSLRWLTHTAYRTHELSLTYPDAEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNHIEGWIEKWRPLADRAAEAYLSMLSSDILPAQ--YLERSTSLRASILTV................. 327
28 -28.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  10  55....................................DPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRA---EKYTQVETLVYMAFYERCGAVFCRNLAAQIEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLYRDKLQNVADAGIFGKPQLRQLISDR---ITAWGLAGEPSLKQFVTG... 275
29 -28.6002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  13  89......................................SDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLDRVWYLSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKEVYYEQNGGALFKDLERYGIRPPKYQDVANDAK.. 328
30 -28.6002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  8  64.......................AEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQTEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKEIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK............. 298
31 -28.4002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  11  64.......................AEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEEVREIIVDAVKIEQEFLTEALPV-GLIGMNCILMKQYIEFVADRLLVELGFSK............. 299
32 -28.1006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  12  41.................KAYWVHTEVDFTADTQDFHAHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEKLLDVPVIRRRVDYLSNVLDNRKYMVSLILFSILIENVQFAILLSFTRFKGKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPV............. 290
33 -27.8002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  15  4............................................YTLAEFLAHAIALETEAAERYVELADMMLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSDPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS.................................................................... 153
34 -27.8001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  15  1......................................MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLNSDAQKTVKKIIDQEKEHLRKLLEMKRES........................................................................ 150
35 -27.7004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  16  15........................................GEANPRFAQLLLEQFGGELSAALQYWVQSFHVAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKS-SQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSDEGTKQTLVHLLTREISHTQMFMKALDSLGKL..................................................................... 180
36 -27.2002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  10  47.......................AEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFFSIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK............. 282
37 -26.8004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  13  28.......................EEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEP............. 272
38 -26.4002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  11  71PLEIVPFAEH------------------PLFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMH-PLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARTIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFSALLLELNAAGIRGAERLVRDFSGARKMVEQLGLDAVDFDFPERPDWSP 341
39 -26.2003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  15  33.......................PEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENKAQIIQQHYRGDDPLKKKIASVFLESFLF-PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISEELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEP............. 269
40 -26.2002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  55.......................PFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNNPTPKTFLESIVYDVILEGLNFFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWKIPGINPEDMETYISFIANKRAVQLGMEK............. 300
41 -25.9001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  13  33.......................PEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEE-KAQIILAHYVSDEPLKKKIASVFLESFLFLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSEELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEA............. 269
42 -25.9001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  12  38.......................PEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEISEENRNLQRKAEIVLQSYRGDEPLKRKV-ASTLLESFLFLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEA............. 274
43 -25.8001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  12  43.......................PEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPTMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQISEENENLQRKAKIIMSYYNGDDPLKKKV-ASTLLESFLF-PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEG............. 279
44 -25.6002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  8  65.......................AEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKEIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK............. 299
45 -25.5004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  14  82....................................DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFF-ILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYGILGLRASMFIDYVQHIADRRLERIGLKP............. 321
46 -25.5004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  32.......................DTRIPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNKAEIINEIYLNGTALEKKIASVFLETFLFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDP............. 268
47 -25.4003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  12  66.......................AEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK............. 301
48 -25.3003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  15  10........................................ARYNRFVADLFGMMAYGELSAFERFSADARYSPTDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAM--LPFQAAVDYFHSRTRPADWYESLMK-AYVIDTVSADFYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPSRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSGLIA-GLAEKHSKRMTQLGLTG 225
49 -25.1006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  12  59.......................PEKIPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEINTETLQERAKALIPYYVNDDPLKSKVAAALM-PGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSAEMKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYDS............. 295
50 -25.1006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  10  63.......................PENIPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQILTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEVDNEALQARPKALIPFYTADDPLKSKIAAALM-PGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYES............. 299
51 -25.0001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  10  59.......................AEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAANDDSLYAERLVAFAAKEGIFQAMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIEKIITEAVEIEKEYYSNSLPV-EKFGMDLKSIHTYIEFVADGLLQGFGNEK............. 293
52 -24.6001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  11  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
53 -24.5002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  12  23...........................................IKKLVDKLVKATAAEFTTYYYYTILRMHLEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKD-PKEILKVLLEAEQCAIRTWKEVCDMTDPRTYDLAQRILQEEIEHEAWFLELLYG......................................................................... 169
54 -24.3001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  9  105.......................AEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF-IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQVREIITNAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFNK............. 340
55 -24.2005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  7  40REDMIPF------------------RGHPIWERLSDETRSRLLSWGWVAYNRNTVLIEQRIANPAFELVIG-QQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFTTWESIVAFEGVPGWEHLVQDHSGIHTLLTEMDV............... 295
56 -23.9001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  11  119.................ASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFF-IFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKK............. 360
57 -23.9001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  19  5.......................................REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCDIVTARLFERIIEEEQAHLTYYENIGSHI........................................................................ 146
58 -23.7002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  15  5........................................SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLR-------------VKQAEDVREMLEYARQSEYETIKRYEKRKEQAMTELVVKLEDMIADETNHMEELDRLLNDK........................................................................ 144
59 -23.6001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  11  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRYCSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
60 -23.6001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  11  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
61 -23.5001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  11  50.......................PEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL............. 323
62 -23.3004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  14  1..................................GPGSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKANDIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFGTSRQNLQSAIAGE-----------------THEYTDMYPGMAKTAFEEIANWFETLAKAERSHANRYTKALDGL........................................................................ 142
63 -23.0003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  15  17.........................................PISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQ---FKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKF-KLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSN..................................................................... 165
64 -22.9003sid_A mol:protein length:180 Symerythrin  ali model follow..  20  24............................................NNTDANAASSIEVEYECDCMYPTFAEIAPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA--STIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLANMEVATAFEAIVKSETKHANWVKRALENLLEVA.................................................................... 180
65 -22.4003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  14  10.......................................KQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQ---FKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKF-KLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQ................................................................. 164
66 -21.8003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  15  4...........................................DAKVIEYLNAALRSELTAVSQYWLHYRLQGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCDYPSKMLFEELIADEEGHIDYLETQIDLM........................................................................ 141
67 -21.7003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  15  4...........................................DPDVLKLLNEQLTSELTAINQYFLHSKMQTELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCDATSARLLEQILADEETHIDYLETQLQLM........................................................................ 141
68 -21.7002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  17  8...........................................DPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................ 145
69 -21.7004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  47.......................PEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQDDEISLFKAMVASVYLESFLFYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDP............. 290
70 -21.6005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  18  4...........................................DPEVIEFLNEQLTAELTAINQYFLHAKLQTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMDITSANVFEAILADEEHHIDYLETQLDLI........................................................................ 141
71 -21.5002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  17  10......................................QGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK------LARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTDYTTCDIAKHILAEEEEHEQDLQDYLTDI........................................................................ 160
72 -21.4001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  17  4...........................................DAKVIEFLNAALRSELTAISQYWVHFRLQAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP------------LRIGEGPRETLECDLAGEHDALKLYREARDYCDIVSKNIFESLITDEEGHVDFLETQISLY........................................................................ 141
73 -21.3003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  16  1......................................MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................ 143
74 -21.3003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  18  19...........................................EPKVIERLNEALFLELGAVNQYWLHYRLLTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP------------LRIGQNVKEVLEADLKGEYDARASYKESREICDYVSKQLFDELLADEEGHIDFLETQLDLL........................................................................ 156
75 -21.2004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  20  4...........................................DQKVIEYLNRGLRSELTAVSQYWLHYRMLKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP------------LRIGQTVKEVLESDLAAEREARALYQEGAAYADFPSKNLFEELMGDEEHHIDFLETQLDLV........................................................................ 141
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.