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Query: 5khn_B mol:protein length:883 RND transporter, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVTSLIVRLVAWSVRRPVWVVVLSLLIAAFSGVYVARHFKINTDISKLVDAEPQWAALSQAVDRAFPQRNGTILAVVEAPAPEFATAAAHALTESLQKQAAAGRIGPVAEPGGGPFFEHNGLLFLSPQQVADTTSQLASARPLVNELAKNPSLTGLATTLSTTLGQPLLTGQVKLPSMAKLLSRSAATVDDVLAGKPAAFSWRALVDNDAARQPARAFVTVQPVVNYGALKAGAQTSDVIRETARALDLEKRYGAVVRLTGEQPLADDEFSSVEDGAALNGVVTLLVVFVILWLALRSKRMIASVLVTLFVGLVVTAALGLAMVGSLNMISVAFMVLFVGLGVDFSIQYGVKYREERFRGEAIDAALIGAAHSMGMPLALATTAVAASFFSFIPTAYRGVSELGLIAGVGMFVALLTTLTLLPALLRLFAPPGESKTPGFPWLAPVDDYLDRHRKPILIGTLAVVIGALPLLAFLHFDFNPLHLKDPHSESMSTLLALKDSPEAAVNDVTLLAPSLADADAAAKRLDALPEVGRTTTLSTFIPADQPEKRAAIATAASTLLPALTQPPAPPATDAQRVAALKRASDLLGYAAEDHPGPGAAAAQHLSQSLAKLAAADSATRDRAERAFADTLRIALNQLAALLQPQEITRDTLPPPLVRDWVAPDGKALVQISPKVPKGVDPNDDTMLRHFATAVKAAEPGAIGGPISILHSANTIISAFLHAALWSIISITILLWITLRRFGDVLRTLVPLLVSGIVTLEMCVVLGMSLNFANIIALPLMLGVGVAFKVYFVMAWRAGQTGLLHSSLTHAVLFSAATTATAFGSLWLSHHPGTSSMGKLLALALTCTLIGAVVFQPVLMGKPRVKRAKNQSQGINELast
1 -177.0005khn_B mol:protein length:883 RND transporter  ali model  100  1MVTSLIVRLVAWSVRRPVWVVVLSLLIAAFSGVYVARHFKINTDISKLVDAEPQWAALSQAVDRAFPQRNGTILAVVEAPAPEFATAAAHALTESLQKQAAAGRIGPVAEPGGGPFFEHNGLLFLSPQQVADTTSQLASARPLVNELAKNPSLTGLATTLSTTLGQPLLTGQVKLPSMAKLLSRSAATVDDVLAGKPAAFSWRALVDNDAARQPARAFVTVQPVVNYGALKAGAQTSDVIRETARALDLEKRYGAVVRLTGEQPLADDEFSSVEDGAALNGVVTLLVVFVILWLALRSKRMIASVLVTLFVGLVVTAALGLAMVGSLNMISVAFMVLFVGLGVDFSIQYGVKYREERFRGEAIDAALIGAAHSMGMPLALATTAVAASFFSFIPTAYRGVSELGLIAGVGMFVALLTTLTLLPALLRLFAPPGESKTPGFPWLAPVDDYLDRHRKPILIGTLAVVIGALPLLAFLHFDFNPLHLKDPHSESMSTLLALKDSPEAAVNDVTLLAPSLADADAAAKRLDALPEVGRTTTLSTFIPADQPEKRAAIATAASTLLPALTQPPAPPATDAQRVAALKRASDLLGYAAEDHPGPGAAAAQHLSQSLAKLAAADSATRDRAERAFADTLRIALNQLAALLQPQEITRDTLPPPLVRDWVAPDGKALVQISPKVPKGVDPNDDTMLRHFATAVKAAEPGAIGGPISILHSANTIISAFLHAALWSIISITILLWITLRRFGDVLRTLVPLLVSGIVTLEMCVVLGMSLNFANIIALPLMLGVGVAFKVYFVMAWRAGQTGLLHSSLTHAVLFSAATTATAFGSLWLSHHPGTSSMGKLLALALTCTLIGAVVFQPVLMGKPRVKRAKNQSQGINE 877
2 -51.6003jd8_A mol:protein length:1278 Niemann-Pick C1 protein  ali model follow..  12  334CLRRLFTRWGSFCVRNPGCVIFFSLVFITACSS-GLVFVRVTTNPVDLSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPQILHQVLDLQIAIENITASYDNETVTLQD----ICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFT-VVISYAIMFLYISLALGHMKSGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPLVLAVGVDNIFILVQAYQRERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLFRFFKNSYSPLLLKDRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHD-----------YTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSS---DDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQG------GDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFRVERAEEALAHMGSSVFSGTLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLGATHGLIFLPVLLSYIGPSVNKAKSCATEE 1265
3 -49.3003k07_A mol:protein length:1055 Cation efflux system protein cusA  ali model follow..  12  2...GMIEWIIRRSVANRFLVLMGALFLSIWGTWTGQAPQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDWARSRVLEYLNQVQGKLPALKTIPDVAEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAG-GSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIAELNGEGEVAGGVVILRSGKN-AREVIAAVKDKLETLKSSLPEGVEIVTTYD---RSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLE---FGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRFLILKVLHWPKTTLLVAALSVLTVLWPLNKVGGEF----LPQINEGDLLYMPSTLPGIS--------AAEAASMLQKTDKLIMSVPEVARVFGKTQLKPQEQWRPGMTMDKIIEELDNTVRPGLANLWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADVQLFVTSMLKTENARPTSWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK..... 1049
4 -48.0002v50_A mol:protein length:1052 MULTIDRUG RESISTANCE PROTEIN MEXB  ali model follow..  12  1........MSKFFIDRPIFAWVIALVIMLAGGL-GASAETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQNIQDPLSRTKGVGDFQVFGSQYSMRIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNATIIGKTRLQTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALD----TAKAIRQTIANLEPFMPQGMKVVYPYD---TTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFG---YRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAF-FAQVQTPPGSSAERTQVVVDSMRRGQSSGMAFIMLKPWEERPGGENSVFELAKRAQMHFFSFKD-LQARNKFLMLAAQNPALQRVRPNGMSDEPQYKLEIDDEKASALGVSLADINSTVSIAWGSSYVNDFIDRGRVKRVYLQGRPDARMNPDDLSKWYVRNDKGEMVPFNAFAT--SPKLERYNGVPAMEILGEPAPGLSSGDMAAVEEIVKQLKGVGYSWTGLSYEERLSGSQAPALY----ALSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKEEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGAGQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTLFKDEASK.... 1037
5 -47.7006dmb_A mol:protein length:1349 Protein patched homolog 1  ali model follow..  11  103KFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAV-GLKAANLETNVEELVEVGGRVSRELNYTRQKIGEMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKLEHDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELI-KNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPLALGVGVDDVFLLAHAFSEGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLSSFAEKHYAPFLLKPKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDL--HRSFSNVKYVMLEENKQLPKMRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTGYPFLFWEQYIGLRHWLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFD-VRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNR 1213
6 -47.6005t0o_A mol:protein length:1040 CmeB  ali model follow..  11  2........FSKFFIERPVFASVVAIIISLAGAI-GADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYGTDPDQATIDVNNRISAATAKMPDLKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQGRLNGNDAVPIMINLQSG--ANALHTAELVQAKMQELSKNFPKGLTYKIPYD---TTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSFIS---QRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSL----VPEEDQGLMISIINLPSASALHRTISEV--------DHISQEVLKTNGVKDAMAMIGFLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNKSGKSYDEIQKDVNKLVAAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDVFNTMNNDFSMLGKNFQVNIRAKGDFRNTQDALKNIF--LDSFLTLQRSSGPDDVKRFNLFPAAQGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEEAAVAAAKLRFRPIIMTSLAFTFGVLPMIFATGAGRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEWLDKK.... 1034
7 -46.9002gif_A mol:protein length:1057 Acriflavine resistance protein B  ali model follow..  12  1........MPNFFIDRPIFAWVIAIIIMLAGGL-GADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLT-GTDADIAQVQVQNMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALD----TAAAIRAELAKMEPFFPSGLKIVYP-----TTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG---YRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFLPSMEILGQAAPGKSTGEAMELMEQLASKLTGVGYDWTGMSYQERNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRKNED.... 1039
8 -46.7006d4h_A mol:protein length:1455 Protein patched homolog 1  ali model follow..  11  82KFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAV-GLKAANLETNVEELVEVGGRVSRELNYTRQKIGEMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVEHLCYKSGELITETGYMDQIIEYLVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPLALGVGVDDVFLLAHAFSEGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLSSFAEKHYAPFLLKPKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDL--HRSFSNVKYVMLEENKQLPKMRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTGYPFLFWEQYIGLRHWLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRY-AVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNR 1192
9 -46.7004k0e_A mol:protein length:1045 Heavy metal cation tricomponent efflux pump ZneA(CzcA-like)  ali model follow..  12  1....MIERLVTLCFNRRGIVALVFAMVALYGWY-GLAAEEVEQQITIPLEREIMGVPGMHVMRSKSTGLSLITVVFKDGAEDYWSRQRLQERINGVS-IPRLKQVAGVVDVANFGGLTTQFMLEFDPVMLSKYNISLNQITQAISENNANAG-GSILNRGEQGLVVRGVGLIRNLDDLGNIVVTQKNGVPVLVKDLGRVVLGNPQRHGILGMDRNPDTIQGITLLLKN--ENPSVVMEGVHAAVRDLNDN-PKDVKVVPY-----RSNLVDATVHTVGKTLMEGMFLVSLVLLLFLGSPRAAIIVAVTIPLSLLMAFILMHHFKIPANLLS--LGAIDFGIIVDGAIVVMLRRREEDAEKELHGRDIMQSVLQVARPIFFGMIVIITAYLPLFFQRIEYFSPMAFAVGFALFGALLVALLLIPGLAYWAYRKPRKVFHNAPRYESVLNRLVGSTRTAIGIAVATLVGVMILGATIGRDFQMADNLRAATMEFPEVEHVVTQVGRNDEGTDPFSPSHIETSTWTSGRDKQQLIEAMATRFRDLPG-YGNDFAETRQVATAITRLLKTVPGAQDVIIDRIDVDRAAAARLGINVADVMALIQTGIGGSPVTQVFVEDRSYNVVARFIGSSRNDPEAIGNLTLTAANGAHVALAQVAH--ETTITREMNKRHLTVRLNLRGRDLSTFLEEARMRIDKEVPYDRTHIQVAWGQFENQQRAQARLAVILPMVLALMFVLLFGEFKNLRQPALILMAVPLATLGGLVALHLRGMTLNVSSAVGFIALFGVAVLNAIIMIANLNREAVVRGAGERMRPVLMTATVAALGLIPAALAHGLGQRPLATVVVGGLITATALTLVLLPALYYLIETRAAKQVRE.... 1025
10 -46.2004mt1_A mol:protein length:1056 Drug efflux protein  ali model follow..  10  1........MAKFFIDRPIFAWVISIFIIAAGIF-GASAQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLT-DTDENLAQVEVQNVVPELQRIEGVGQVRLFGAQRAMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMA----TAKAVKERLAVLEKYFPQGMSWKTP-----TSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMFS---YKQFALTMASSIAFSAFLALTLTPALCATMLKTIPKGHHETHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSF----LPTEDQGFVMVSVQLPAGATKERTDATL--------AQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFAIFKDWNERTASGSDAVAVAGKLTGMMMGTLKDGFNLQDRNNTGHTALLAKRNELIQKMRASGLFDPSTVRAGGLEDSPQLKIDIRAAAAAQGISFADIRTALASALSSSNGYPSMKLSASPATGVSTGQMEAVQKMVDELGGYSFEWGGQSSEEAKGGSQTL----ILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVSVPSFANDIYFQVGFVTVMGLSAKNAILIIEFAKDEAALEAARLRFRPIIMTSFAFILGVVPLYIAAGASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFFKETAHE.... 1046
11 -38.3003aqp_A mol:protein length:741 Probable SecDF protein-export membrane protein  ali model follow..  10  13..................GVFLLALLFVWKPWAPEEPKVRLGLDLK--------------------GGLRIVLEADVENPTLDDLEKARTVLENRINALGELPGLSQADQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPEDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVL-VIRQAITGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYGP-HLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNFMGPARYVTAATLLLAALAAGVVFAKGFNYSIDF-----------------------------------TGGTAYTLRAEPNVEVETLRRFLEEKGFPGKEAVITQVQAPT----------------------------------------------------------------------------------------------------------AAYREFLVKLPPLSDERRLELERLFASELKATVLASETVGPAI-----GEELRRNAVMAVLVGLGLILLYVAFRFD-WTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKNRSINQTLSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRRKAQEASKA.. 735
12 -37.7005xam_A mol:protein length:750 Protein translocase subunit SecD  ali model follow..  11  1............MSRPNPWTALLLLLTLLGSLLYIWRPWEHKNDPWSLWNDQYQFMTLGLDLK---GGLRIELAPESGTATRDELDRVKTVIENRINALGEIPGATPAVQDRARSIIQQTALEFRIVNSDAKPDPAVREKNPRSSGYTLAQLGPVVATGETIADATSGTDQRSGQWVVNFKTTDAGAKTFGDFTGKNVNRLMAVVLD-----DQIQSVATINQRLFRDIQISGNFTPEEASQLALVLKSGALP-IKIVTAAERSIGPSLGADAIRSGAIAALVGIGLVFVMLFAYYG-LWFGLVGALGLLFSSIIILGILGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELARGKGIKNAIGAGYEHSTAAILDVNASHLLSALALYNYSTGAVKGFAVTLIIGVIASTFSNLVFAKWFMQWLAQRRPNMSAPQWIKHTHFDFMKPAKVITTLSVLLALAGAALVATRYGVDFAPGTTLTARVDRQVTTEQLRNSVIGAGVSKVTGQSATIQRDTTPG--------------------------------------------------------------------------------------------------------------------------------------------QQGQNFTVKVPELNDAEVKQIGAAIGKLPQGQVLASETVGPAV-----GKELTQKTIYAVLLGLGLILVYVGFRFD-FIMGLGSIIAAIHDVAIAMGLFSLLGLEFTVASVAALLTLIGYSLNDSIIVSDRIRENMKNAAINQTLSRTVMTSVSTMLPLISLLIFGGPVLRDFSLILLVGILVGTYSSIYIVAPLVVYFEEWRDKNRAAKPVT 740
13 -19.9005mg3_F mol:protein length:323 Protein translocase subunit SecF  ali model follow..  11  88.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFE-WRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEK 313
14 -16.1005mg3_D mol:protein length:622 Protein translocase subunit SecD  ali model follow..  12  398...........................................................................................................................................................................................................................NIQSRLGNSFRITGINNPNEARQLSLLLRAGALI-APIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKF--LIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 613
15 -9.6403f5w_C mol:protein length:104 Voltage-gated potassium channel  ali model follow..  15  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETTTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQEQQQQGQ........ 104
16 -9.6203eff_K mol:protein length:139 Voltage-gated potassium channel  ali model follow..  14  3.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETTTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKA 111
17 -9.5904uuj_C mol:protein length:111 VOLTAGE-GATED POTASSIUM CHANNEL KCSA  ali model follow..  16  4..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ALLLGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETTTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH........ 111

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.