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Query: 5ldl_A mol:protein length:124 myristoylated M-PMV matrix protein mutant, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst GQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDICPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVIAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLELast
1 -56.3005ldl_A mol:protein length:124 myristoylated M-PMV matrix protein mutant  ali model  100  1GQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDICPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVIAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLE 118
2 -55.7002mv4_A mol:protein length:125 Matrix protein p10  ali model follow..  96  2GQELSQHERYVEQLKQALKTRGVKVKFADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYFNTFGPEKVPVTAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLE 119
3 -55.4005lmy_A mol:protein length:125 Matrix protein p10  ali model follow..  98  2GQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLE 119
4 -48.3002f77_X mol:protein length:100 Core protein p10  ali model follow..  96  2GQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKFWRRVGDCFQDYYNTFGPEKVPVTAFSYWNLIKELIDKKEVNPQV.................... 99
5 -47.2001bax_A mol:protein length:94 M-PMV MATRIX PROTEIN  ali model follow..  97  2GQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTAFSYWNLIKELIDKKE......................... 94
6 -44.3005hyb_A mol:protein length:91 Matrix Protein  ali model follow..  30  1GVSGSKGQKFVSVLQRLLSERGLHVKESSAIEFYQFLIKVSPWFPEEGGLNLQDWKRVGREMKRYAAEHGTDSIPKQAAPIWLQLREILT............................ 91
7 -44.1004zv5_A mol:protein length:91 Matrix protein p10  ali model follow..  30  1GVSGSKGQLFVSVLQRLLSERGLHVKESSAIEFYQFLIKVSPWFPEEGGLNLQDWKRVGREMKRYAAEHGTDSIPKQAYPIWLQLREILT............................ 91
8 -14.9005kza_A mol:protein length:104 virus matrix protein  ali model follow..  10  1....SEFEAVIKVISSACKTYCGKTSKKEIGAMLSLLQKEGLLMSPSDLYSPGSWDPITAALSQRAMILGKSG-----LKTWGLVLGALKAAREEQVTSEQAKF.............. 98
9 -13.0005kz9_A mol:protein length:163 Virus Matrix Protein  ali model follow..  2.......EAVIKVISSACKTYCGKTSKKEIGAMLSLLQKEGLLMSPSDLYSPGSWDPITAALSQRAMILGKSG-----LKTWGLVLGALKAAREEQVTSEQAKF.............. 96
10 -12.8001a6s_A mol:protein length:87 GAG POLYPROTEIN  ali model follow..  10  2.......EAVIKVISSACKTYCGKTSKKEIGAMLSLLQKEGLLMSPSDLYSPGSWDPITAALSQRAMILGKSG-----LKTWGLVLGALKAAREE....................... 87

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.