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Query: 5lfd_A mol:protein length:242 Allantoin racemase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRILVVNVNTTASITETIAEQARAVASPGTEIVGLTPYFGAESVEGNFESYLAAIAVMDRVMAYDQPFDAVIQAGYGEHGREGLQELLNVPVVDITEAAASTAMFLGHAYSVVTTLDRTVPLIEDRLKLAGLYQRCASVRASGMAVLELEEDPVAAMEAIVRQAELAIREDKAEVICLGCGGMAGLDEQIRQRTGVPVVDGVTAAVTIAESLVRLGLSTSKIRTYATPRPKKVIGWPGRLGRLast
1 -91.9005lfd_A mol:protein length:242 Allantoin racemase  ali model  100  1MRILVVNVNTTASITETIAEQARAVASPGTEIVGLTPYFGAESVEGNFESYLAAIAVMDRVMAYDQPFDAVIQAGYGEHGREGLQELLNVPVVDITEAAASTAMFLGHAYSVVTTLDRTVPLIEDRLKLAGLYQRCASVRASGMAVLELEEDPVAAMEAIVRQAELAIREDKAEVICLGCGGMAGLDEQIRQRTGVPVVDGVTAAVTIAESLVRLGLSTSKIRTYATPRPKKVIGWPGRLGR 242
2 -87.3003qvj_A mol:protein length:245 Putative hydantoin racemase  ali model follow..  40  2VRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIAGREQGVDGHVIACFGDPGLLAARELAQGPVIGIAEAAMHMATMVATRFSIVTTLPRTLIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGCGGMATLAQQLTRELRVPVIDGVSAAVKMVESLVALGLATSKHGDLAFPEKKALSGQFQSLNP 244
3 -64.9002eq5_A mol:protein length:228 228aa long hypothetical hydantoin racemase  ali model follow..  18  7YTIGLIRVTLEDKEILNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAEFEREGVDAIIISCAADPAVEKVRKLLSIPVIGAGSSVSALALAYGRRVGVLNLTEETPKVIRSILGNNLIAEDHPSGVSNTLDLLT------DWGRREVINAAKRLKEKGVEVIALGCTGMSTIAPVLEEEVGIPVIDPVIASGAVALHALKRREVKRFEG................... 227
4 -18.7003s7z_A mol:protein length:268 Putative aspartate racemase  ali model follow..  12  29.....MGPAATADMLEKFVELRHASCDQQIPLIVSSIPDIPDRTACLLSGGPSPYRYLYLHMLEDAGAECIVIPCNTAH-FDDLQNVAKARMISILDATLGDIPPSARHVGLLTNATLATGLYQKKALARGLTLIQPE-ALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTAS---LVRAAIRWYESWPDT.................... 250
5 -17.4002zsk_A mol:protein length:226 226aa long hypothetical aspartate racemase  ali model follow..  17  1MKKI-TTPESTLYYYKKYIEISREKFEKYYPELIIYSINFKEFFQNPEGWEGRKKILINAAKAERAGAELIAFAANTPH-FDDVQREVNVPMVSIIDAVAEEILKRGRKVLLLTKTTMTADFYIKTLEEKGLENDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIK--QGDVSVEVFDSAEIHMRKLIELA............................. 224
6 -16.6005wxx_A mol:protein length:260 McyF  ali model follow..  11  17.....MGPVVTAEFLKSIYEYNPFIDKEQPNVIVFSFPSAPDRTGSIDSEREFIDFIQVNLEHLNKLADCIVIGCCTAH-LPQIPENLKDKLISLIKIADQELQEYNEPTLLLSTGTYQKKLFQEGCTTADLESDQKLIHEMIYKVLKRGHDPLSILRDIEAL----LEKYNTRSYISGCTEFHLLTKSLKGIDSIKAIDPLSTIAQNFSQLIIKQAQVDLVTDCHQPSNPK.......... 252
7 -16.5002dgd_A mol:protein length:223 223aa long hypothetical arylmalonate decarboxylase  ali model follow..  13  7.RIGVILPANNAGMEYDLWKMAPE------GVSIHSTRMKPTKGCEPENVEEFEKELKYSYSLLAEVSDIIIYGRTYGTHKAHVIKRVIKDVVIPEESVYELLKKLNRKLWIGT-IKERTLEEVEWWRNKGFE-----VGYDGLGKIRGIDISNTPIFTIYRLVKRHLNELKADAVYIACTALYEAVQYLHEDLDMPVVSENAAAM---EALNKLKIKAKLPG................... 222
8 -16.3001jfl_A mol:protein length:228 ASPARTATE RACEMASE  ali model follow..  13  1MKTI-MGPLATAELFRRIVIKTPAKRDQEPKVIIFNNPQIPDRTAYILGKGEDPRPQLTAKRLEECGADFIIMPCNTAH-VEDIRKAIKIPIISMIEETAKKVKELGKKAGLLTTGTIVSGVYEKEFSKYGVETEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLK--QDDLKVPLIDPMDVIAEVAVKVA............................. 225
9 -16.0004ix1_A mol:protein length:258 hypothetical protein  ali model follow..  11  13.KVGLISTPVIEN----AHVELARVAPEGVGVYQTFPYVPNFRVDATNIKRAVEQLETSAAALGSAGVDIVGQVGTPFS-STKLEKASGKPVALMGLSIVEALQERGKTVAISSYSRELSERYTQFLEAGGIRVLTIKNWVDQKRFPDEESVDGRNLWYPASYAYKSAEAPEADCIIMSGAAVMDIIAPLEADLGKPVISSDSAFFWKILSLLGVRETSGGWG................... 252
10 -15.8002vlb_A mol:protein length:251 ARYLMALONATE DECARBOXYLASE  ali model follow..  16  10.TIGMIVPPAAGLVPADGARLY-----PDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQ--GAAVVSLMGTSLS-TVAMREATGLPCTTMSTAVLNGLRALGRRVALAT-IDDVNERLAAFLAEESLV-----TGCRSLGITGVEAMARVDTATLVDLCVRAFEAPDSDGILLSCGGLLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGG.......................... 228
11 -15.6001zuw_A mol:protein length:272 glutamate racemase 1  ali model follow..  13  17................TVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLE-NHHIKMLVIACATAIALDDIQRSVGIPVVGVIQPGARAAIKVNQHIGVITENTIKSNAYEEALLALNPDLKVENLAC--VPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGVNIISSGDETAREVSTILS............................ 221
12 -15.4003out_A mol:protein length:268 Glutamate racemase  ali model follow..  15  21................TIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLI--DQEVKAIIIACISAIAKDIVQEIAAIPVIDVITAGVSLVDNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPC--VSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKLIDPSLQASKMLYSLLF............................ 220
13 -15.4003hfr_A mol:protein length:269 Glutamate racemase  ali model follow..  15  19................TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLV--DRGIKMLVIACATAAALYDIREKLDIPVIGVIQPGSRAALKANNKIGVLTLGTVESMAYPTALKGLNRRVEVDSLACPKVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGVAVINSGEETASEVSALLD............................ 222
14 -15.4002dwu_A mol:protein length:276 Glutamate racemase  ali model follow..  17  21................TVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLK--QFPLKALVVACAAAATLAALQEALSIPVIGVIHPGARAAIKVKGKIGVITVGTIQSNMYEKALHELDTYLKVHSHACPTATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGVTIISSAEETAIELSTILQ............................ 224
15 -15.3002jfu_A mol:protein length:291 GLUTAMATE RACEMASE  ali model follow..  15  33................TVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLV--EQGIKMLVIACATAVALEEIKAALSIPVIGVILPGTRAAVKKNKQVGIITIGTVKSQAYEKALKEKVPELTVTSLACPKVSVVESNEYHSSVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQNVMGVQLIDSGAETVGEVSMLLD............................ 236
16 -15.3002gzm_A mol:protein length:267 Glutamate racemase  ali model follow..  15  17................TVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLL--DLNIKMLVIACATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTYHVGIITIGTVKSGAYEEALKSINNRVMVESLAC--VELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGVQLISSGDETAREVSTILY............................ 220
17 -15.2002jfo_A mol:protein length:293 GLUTAMATE RACEMASE  ali model follow..  15  32................TVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLL--KKRIKMLVIACATAVALEEIKAALPIPVVGVILPGARAAVKVNNKIGVITLGTIKSASYEIAIKSKAPAIEVTSLAC--VPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGVTLIDSGAETVGEVSMLLD............................ 235
18 -15.1005ell_A mol:protein length:238 Asp/Glu_racemase family protein  ali model follow..  12  1MKTI-MSWESTIPYYRLINEGIKQRLGAQVLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMH-ADAIESRCTLPFLHIADATGRAITGAGTRVALLGTRYTMEQDFGRLTEQFSINCLIPEADERAKINQIIFEE-TEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVP--EERSVLPVFDTAAIHAEDAVAFM............................. 228
19 -15.1005hj7_A mol:protein length:273 Glutamate racemase  ali model follow..  15  21................TVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLV--GRGVKALVIACASSACLRDARERYQVPVVEVILPAVRRAVAANGRIGVITRATITSHAYQDAFAAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGVTLVSSAEETAKEVVRVLT............................ 223
20 -14.9002jfq_A mol:protein length:286 GLUTAMATE RACEMASE  ali model follow..  15  30................TVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLM--EFDIKMLVIAC-TAVALEYLQKTLSISVIGVIEPGARTAIMTNQNVLVLTEGTIKSEAYRTHIKRINPHVEVHGVACPGF-VEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGKTVISSGLETAREVSALLT............................ 234
21 -14.7003ojc_A mol:protein length:231 Putative aspartate/glutamate racemase  ali model follow..  12  2MKIL-MSWESTIPYYRMINQHVKAQLGAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMH-ADDIEAACGLPLLHIADATAVQIKQQGDKIGLLGTRYTMEQGFGRLTEKHGIEVITPDDTDREAVNRIIYEE-SETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVN--AQDASVPVFDTTAI---HASAAADYALQ........................ 231
22 -14.5005b19_A mol:protein length:232 Aspartate racemase  ali model follow..  10  2GKIV-MGPVATVKFIEKLTSMTDAEIDQDRYVLYNDPEIPDRIEAYFENMESPVNAINNGIKYESIGIDTIGMACNTAHIWFK-EFVYKSNFLNMIDLTASVLKKSGKNVLLLTNATVSSGIYTGKLRDYNINTVIPDQDIVMKSIHYVKVNDTKMARETIEPVIN-GHRNEVDALLLACTEMPVIIS--EKTYNIPVIDSDEA---LAAALIKSAGKRLK..................... 224
23 -14.4003uhf_A mol:protein length:274 Glutamate racemase  ali model follow..  12  32................SVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFE--QFQIDMLIIAC-SAYALDALRAKAHFPVYGVIDAGVEATIKANKEILVITKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITT--PDALILACTHFPLLGRSLSKYFGTKLIHSGDAIVEFLKERENIDLKNHK..................... 241
24 -14.4004fq5_B mol:protein length:281 Maleate cis-trans isomerase  ali model follow..  11  23.RVGQIVPSSNITMETEIPALLKAVAPERFTFHSSRMRMKHVTKEELARMDGDSDRCALELSDA--RVDVMGYACLVAIGHGYHRVSAETPIITSAGALIDGIRALGKRVAVVT-MKPLTELVVDYIRHEGIE-----GDYRALEISDNLAVAAHDPMNLPGIIASMRTDDVDAIVISAAVQMLNAITMVEAQTRKPVISAAVATTWAMLTALDLPTRVPGGG................... 260
25 -14.3002jfn_A mol:protein length:285 GLUTAMATE RACEMASE  ali model follow..  12  35................SVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQE-RYPLALAVVAC-STVSLPALREKFDFPVVGVVPAIKPAALTANGIVGLLTRGTVKRSYTHELIARFANECQIEMLGSAEVELAEAKLHGEDVSLDALKRILRPWMKEPPDTVVLGCTHFPLLQEELLQVLPTRLVDSGAAIARRTAWLLE............................ 240
26 -14.2002xec_A mol:protein length:273 PUTATIVE MALEATE ISOMERASE  ali model follow..  12  21.RIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADA--APEVILYACLVAVMVQLATGGSQALVRSSAGALVEGLRALDQRVALVT-MRPLAEKVVAYLEAEGFT-----SDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAG................... 255
27 -13.8002jfx_A mol:protein length:255 GLUTAMATE RACEMASE  ali model follow..  12  1MKIGVFDSGVG-----SVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFK--PHEIELLIVAC-SALALEEMQKYSKIPIVGVIEPSILAIKRQNAPILVLTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEI-LPEVIILGCTHFPLIAQKIEGYFMPLLIHSGDAIVEYLQQKYALKNNACTFPKVE................ 235
28 -13.8001b73_A mol:protein length:254 GLUTAMATE RACEMASE  ali model follow..  15  1MKIGIFDSGVG-----TVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLK--DKGVDIIVVAC-SAYALERLKKEINVPVFGVIEPGVKEALKKNKKIGVITPATVKSGAYQRKLEEGGADVFAKACPLF-APLAEEGLLEGEITRKVVEHYLKEFKG-KIDTLILGCTHYPLLKKEIKKFLGAEVVDSSEALSLSLHNFIK............................ 213
29 -13.7005ijw_A mol:protein length:279 Glutamate racemase  ali model follow..  13  21................TVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPQIRAHSLAIGDDLV--SRGVKALVIAC-SSACLRDAREYSPVPVVEVILPAVRRAVAANGRIGVITQATIASGAYQDAFAAARDTEVFTVACPRFVDFVERGVTSGRQVLGLAEGYLEPLQLAEVDTLVLGCTHYPMLSGLIQLAMGVTLVSSAEETAKDLLRVLT............................ 224
30 -13.5002oho_A mol:protein length:273 Glutamate Racemase  ali model follow..  14  26................TVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLL--TQNVKMIVFAC-TAVAWEEVKAALDIPVLGVVLPGASAAIKSKGQVGVITPMTVASDIYRKKIQLLAPSIQVRSLACPKVPIVESNEMCSSIAKKIVYDSLAPLVG-KIDTLVLGCTHYPLLRPIIQNVMGVKLIDSGAECVRDISVLLN............................ 228
31 -13.3005w1q_A mol:protein length:275 Glutamate racemase  ali model follow..  12  28................SVLKSLLKAQIFDKIIYYGDSARVPYGTKDPTTIKQFGLEALDFFK--PHKIELLIVACASALALEEMQKHSKIPIVGVIEPSILAIKQQNAPILVLTKATIQSNAYDNALKQQGYLNVSHLATSLFVPLIEENILEGELLETCMRYYFTPLEI-LPEVVILGCTHFPLIAQKIEGYFMPLLIHSGDAIVEYLQQKYTLKKNACTFPKVE................ 249
32 -13.2005w16_A mol:protein length:278 Glutamate racemase  ali model follow..  14  34................TVLKALRRLLPREEFLYFGDTARVPYGGKPLAMVRRFAWEIAGFLL--RQGVKAIVVACASSAALPDLAEDLSVPVFGVVEPAARAARG-FRKVGLIGT--------QATVESGAYPRYVDLAWAKAVPLVEEGLWDDPVALLVARHYLEDAPK-DLEALILGCTHYPFLKGAIGAVLPVALLDSAELTAQEVARALE............................ 226
33 -9.7602q5c_A mol:protein length:196 NtrC family transcriptional regulator  ali model follow..  9  5LKIALISQN--ENLLNLFPKLALEK-NFIPITKTASLTRA-----------------SKIAFGLQDEVDAII---SRGATSDYIKKSVSIPSISIKVTAVYNAKRFGNELALIAYKHSIVDK-----------HEIEAMLGVKIKEFLFSSEDE------ITTLISKVKTENIKIVVSG-----KTVTDEAIKQGLYGEESLRRAIEEALNLIEV........................... 186
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.