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Query: 5lq6_A mol:protein length:219 Virulence protein vsdE, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GPGMRVSGSASSQDIISRINSKNINNNDSNEVKRIKDALSIESKERILYPQNLSRDNLKQMARYVNNTYVHYSGNCVLLSACLHYNIHHRQDILSSKNTASPTVGLDSAIVDKIIFGHELNQSYSLNSIDEVEKEILNRYDIKRESSFIISAENYIAPIIGESRHDFNAVVISEYDKKPYVQFIDSWKTSNILPSLQEIKKHFSSSGEFYVRAYDEKHDLast
1 -132.0005lq6_A mol:protein length:219 Virulence protein vsdE  ali model  100  1GPGMRVSGSASSQDIISRINSKNINNNDSNEVKRIKDALSIESKERILYPQNLSRDNLKQMARYVNNTYVHYSGNCVLLSACLHYNIHHRQDILSSKNTASPTVGLDSAIVDKIIFGHELNQSYSLNSIDEVEKEILNRYDIKRESSFIISAENYIAPIIGESRHDFNAVVISEYDKKPYVQFIDSWKTSNILPSLQEIKKHFSSSGEFYVRAYDEKHD 219
2 -6.6401njf_A mol:protein length:250 DNA polymerase III subunit gamma  ali model follow..  15  1.......GAHMGGSMSYQVLARKWRPQTFADVEHVLTALANGLSLGRIHHAYLKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA-RGRFKVYLIDEVH-----------------------------SRHSFNALLKTLEEPPEHVKFLLATTDPQKLP......................... 170
3 -6.4105bon_A mol:protein length:164 Probable 8-oxo-dGTP diphosphatase NUDT15  ali model follow..  14  1................................................................MTASAQPRGRRPGVGVGVVVTSCKHPRCVLLGKRKGSVGAGSFQLPGGHLEFGETWEECAQRETWEEAALHLKNVHFASVVNSFIEKENYHYVTIL------MKGEVDVTHDSEPKNVEPEEWVPWEELPPLDQLFWGLRCLKEQGYDPFKEDLN 154
4 -6.2505t0z_A mol:protein length:183 Lipoprotein, putative  ali model follow..  10  35.PFINNTETPYAAERAEAVTAALLHTHGMQKLERTVTETAKGDDHLGLDRGELKQKAALEAAKQKKVRYA-------IAGTVNEWRYKVGLD-------GEPVAGFTLQVIEKVVWSGVAGKSWSRDAVSAVAQQVLDS................................................................................ 163
5 -5.9702p1j_A mol:protein length:186 DNA polymerase III polC-type  ali model follow..  9  19...FETTGLDPQVDEIIEIG-----------AVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEEFLGFLEDSIIVA----HNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSL-RSYSLDSVEKLGLGPFRHHRALDDARVTAQVFLRFVEMMKKEG....................................................... 180
6 -5.9602km7_A mol:protein length:102 Small protein A  ali model follow..  8  1...........................................................................SSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVL.............................................................. 82
7 -5.9401pxv_A mol:protein length:183 cysteine protease  ali model follow..  10  2.....................................................EFDQVQYENTLKNFKIREQQFDAAGFSMAALLNATKNTDTYNAHDIMRPNCATFPNQMIEYGQGRDIHYQEGVPSYNQVDQLT-----KDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYN......... 169
8 -5.9401cv8_A mol:protein length:174 STAPHOPAIN  ali model follow..  8  2.....................................................NEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRQFTGLTPREMIYFGQGRSPQLLNRMTTYNEVDNLT------KNNKGIAILGSRVESRNGMHAGH---AMAVVLNNGQEVIIIWNPWDNGFMTQDAKNNVIPVSNGDHYQ......... 166
9 -5.9301y4h_A mol:protein length:188 cysteine protease  ali model follow..  12  1...............................................MGSSSQDPDQVQYENTLKNFKIREQQFDCAGFSMAALLNATKNTDTYNAHDIMRPNCATFPNQMIEYGQGRDIHYQEGVPSYNQVDQLT------KDNVGIMILAQSV-NPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYN......... 174
10 -5.9003pvj_A mol:protein length:277 Alpha-ketoglutarate-dependent taurine dioxygenase  ali model follow..  14  1...MSLTITPLSPALGAQISGVDISRDISAEERDAIEQALLQHQVLFLRDQPINPEQQARFAARFGDLHIHVPDTPQVLNAVWHTDVTFLPAVLSAKQL--PAYGGDTLWASGIAAFEALSAPLTRRNNPPLSHPVVRTHPVSGRKALFVN-EGFTTRINELSELESDALLLFAHATRPEFSIRWRWQENDVA.......................... 244
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.