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Query: 5lzs_E mol:protein length:291 60S ribosomal protein L6, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAGEKAPAAKPDATKKSPAKKADHARGKAKKKTLAEKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYAAPKSRIERKKKREKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVFLast
1 -115.0005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model  100  1MAGEKAPAAKPDATKKSPAKKADHARGKAKKKTLAEKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYAAPKSRIERKKKREKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF 291
2 -104.0004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  89  1MAGEK--VEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKK-EKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
3 -103.0003j92_E mol:protein length:284 eL6  ali model follow..  89  1MAGEK--AEKPGTKEKKPEAKKADAGGKVKKA----KKVKKGKPHCSRNPVLVRGIGRYSRSAMYSRMAMYKRKYSAAKSKVEKKKK-VRVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
4 -100.0003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  94  1...........................................PHCSRNPVLVRGIGRYSRSAMYSRMAMYKRKYS------------AAVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 236
5 -81.2003jbs_A mol:protein length:176 eL6  ali model follow..  43  1.............................................................................................................MSAQKAPKWYPSEDVAALK----KTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN--LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
6 -80.0005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  45  1.............................................................................................................MSAQKAPKWYPSEDVAALKKTR----KAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXX--XXXXXXXXKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
7 -79.6005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  39  4..............................................................................................................TAAALAKKRLRTRKPKRQLYKSPAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDKLLTQYLKTRFTLRGNMRPHEMKF 193
8 -76.4003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  28  1...........................................................................................MTNTSNELKHYNVKGKKKVVPVNAKKTINKKYFGRKVASKKKY---VVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFELNYAQDIDDDSFIKTLEIKKKNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKF 221
9 -75.6005t2a_t mol:protein length:195 eL6  ali model follow..  34  2..................................................................................................................AATKSAASAAKRKAAKK-VSRKSPEYTTLRKSCAPGAIAIILAGRFRGRRAVILKQLHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGAKKTSKAGKKTLVSDARAQLQKKIDAALIAAIKKDAQGKGYLRSVFTVKPGDAPHRWNW 195
10 -74.4003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  34  2..................................................................................................................AATKSAASAAKRKAAKK-VSRKSPEYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEAAKKTSKAGKKTPVSDARAQLQKKIDAALIAAIKKDAQGKGYLRSVFTVKPGDAPHRWNW 195
11 -73.9005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  37  1..........................................................................................................................................EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPEKAGYLHSVFTIKPGDAPHRMRW 171
12 -58.5005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  28  2..........................................................................................AELLFISPIAKKDIKRPSW---RGIPRISFTRPAVAAEVDPIAKPCNAKAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPV----VPVNEISQDYLIATSTSIDV---------------------------------------------AANATEAQVEAAAAKVPEMVDYLKAPFTIKKGNRIHLMKF 151
13 -24.8002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  22  2................................................................................................................................................PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKI........................................................... 89
14 -13.3005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  14  5...............................................................................................................................................TRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGA-GVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDD-GKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK.......................... 134
15 -12.7003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  22  5..................................................................................................................................................LKPGKVIIILNGRRAGKKAVIVNTYEGQTCLVAG---IEKHPIKCINVNHILPTRYQVAND-FDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDI.................................... 137
16 -12.5003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  16  15..................................................................................................................................................VEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGP---AGVPRQAINLGQVVLTPLTFALPR---AAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA............................ 138
17 -12.1005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  8  4...............................................................................................................................................KQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVL---FDAPRQTIPIQRLKLTDYVAKIQR-AAAKDFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN............................. 127
18 -12.0003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  14  22...............................................................................................................................................KRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGA-FITGVPRMVIPLKRLKLLKERIKINK---STKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQK............... 162
19 -11.9005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  18  4..................................................................................................................................................LQAGRFVVMLQGRHAGKKAVVLAAYPEGTAIVMGPKKVTK--VKAVNFNHVMLTRHNVKDEDFFKKISVEKVVAALKDAPAKKALLTEYAAVLRQKYLNNKMA.......................................... 131
20 -11.7005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  24  3..................................................................................................................................................LKPGKVVIVTSGRYAGKKAVIVQNTDSKSSLIAG---MKKYPLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRK............................................................ 112
21 -11.4005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  16  3..................................................................................................................................................IRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENP-ADKKMWRHVQNLKNVEPLKFSVELSR---EKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDENDKKKP....................... 132
22 -11.3003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  21  1..............................................................................................................................................MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIATALLAGPKKVVR--LRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRH............................................................ 114
23 -11.2003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  19  5..................................................................................................................................................LKAGKVAVVVRGRYAGKKVVIVKPHDEG-ALVAG---IERYPIKVVNYNHLLPTRYTLDVKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQ................................................. 128
24 -11.2005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  18  1..............................................................................................................................................MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGAFCLVAGPLKVHK--LKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSK...................................... 135
25 -11.1003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  25  1..............................................................................................................................................MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDG-ALVAGPRKVTA--VKVYNYNHLMPTRYSVDIPTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK................................................. 128
26 -10.5003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  16  62...............................................................................................................................................SHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENP-EDAKMWRHVQNLKNVEPLKYCVSVSR---SSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDAKTP....................... 194
27 -10.1004adx_7 mol:protein length:126 RPL14E  ali model follow..  14  4...............................................................................................................................................NKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE----HIVRQVIPIRRVHLTKFQIDLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS................................ 125
28 -9.6203j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  20  4...............................................................................................................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC--TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAK-------WAATRWAKKIEAREKKAKMTDFDRYKVMKARK......................... 117
29 -9.4105lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  23  4...............................................................................................................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTK................................................................ 85
30 -9.2104d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  22  4...............................................................................................................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TQVRRQAMPFKCMQLTDFILKFP.................................................................................... 65
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.