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Query: 5lzs_M mol:protein length:218 Uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKATAAGKKAAAQKAPAQKAPAQKAAGQKAAQPPKAQKGQKPPAQKAPAPKASGKKALast
1 -84.6005lzs_M mol:protein length:218 Uncharacterized protein  ali model  100  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKATAAGKKAAAQKAPAQKAPAQKAAGQKAAQPPKAQKGQKPPAQKAPAPKASGKKA 218
2 -75.9003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  84  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQKAA-----LLKASPKKALAKGAAAAAAAAAAKVPVKKITTAGKKAPAQKAPAQKAAGQKAAPPPKAQKVQKPPAQKAPAPKASGEKA 213
3 -75.7004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  87  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTK---GTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
4 -70.2006d90_M mol:protein length:198 eL14  ali model follow..  99  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKAT--------------------AAGKKAAQPPKAQKGQKPPAQKAPAPKASGKKA 198
5 -64.8003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  21  59MVKSHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENPEDKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDAKTPVSWHKVALKKMQKKAAKMDSTEGAKRRMQKAIAARKAKK............................................ 233
6 -62.6003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  27  19LLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFTGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA........................................................................ 165
7 -61.4003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  43  9ASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA........................................................................................ 138
8 -60.0005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  33  1MPFKQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVLEFDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAK--DFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN......................................................................................... 127
9 -59.1005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  22  1....NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENPAKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDENDKKKPVSWHKVALKKLQKNAKK.................................................................. 149
10 -57.6005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  42  3.LFTRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK...................................................................................... 134
11 -56.1004adx_7 mol:protein length:126 RPL14E  ali model follow..  39  1MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE--HIVRQVIPIRRVHLTKFQINVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS............................................................................................ 125
12 -36.8002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  28  2....PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKTGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPT.......................................................................................................................... 95
13 -18.7003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  18  51...RKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGP-NGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNE................................................................................................................ 155
14 -15.9005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  21  52..TRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPVVPVNE--ISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFTIK............................................................................................................................ 141
15 -14.1005lzs_b mol:protein length:245 Uncharacterized protein,eL29  ali model follow..  25  138.................................................................................................................KAQIKAQAQAQIKSKGKGKAQAETKPKAQAETKPKAQAQAKPKAQAQGKPKAQAQGKPKAQAQAKPKAQAQAKPKAQAQTKPKAQATPAAPVPAQAPPKGAQPPA 242
16 -13.3003jbs_A mol:protein length:176 eL6  ali model follow..  16  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP-NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVV.......................................................................................................... 141
17 -12.8005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  18  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP-NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXXXXXXXXXXKEIKAERVEDQKVV.......................................................................................................... 141
18 -12.0005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  13  5..LRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLISGP-NGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKPKGIVSDARAQLQKKVDAALIEAIRKDPLGK................................................................................ 148
19 -11.8002mk0_A mol:protein length:120 HEP200 protein  ali model follow..  1................................................................................................................................................SYYTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDN 74
20 -11.8006az1_Y mol:protein length:159 ribosomal protein S21e  ali model follow..  23  74...................................................................................................................................NHITIDRGIMRIKTGKPKRVSKSKSKKPTAGAAGQKGARPPAQKGARPSGQKGARPPAQKGARPPAQKGARPPAQKGAAPARKNRA. 159
21 -11.7005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  21  1....KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKHSLIAGPKKVVRGRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNR..................................................................................................................... 124
22 -11.7005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  12  37...RSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLVTGP-NGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKL-RKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDK................................................................................... 170
23 -11.4003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  19  89...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKK----------LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVP................................................................................... 213
24 -11.1003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  23  3....KFLKPGKVVIVTAGRYAGHKAVIVQNSDIARALLAGPKKVVRGRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSM..................................................................................................................... 126
25 -11.0005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  19  3....KLLKSGRVVVVLNGRHAGKKGVVVNTWEGSKCLVAGIEKAPLKKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKA..................................................................................................................................... 109
26 -11.0005t2a_t mol:protein length:195 eL6  ali model follow..  12  30...RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVSGP-NGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKKKTLVSDARAQLQKKIDAALIAAIKKDAQGK................................................................................ 172
27 -10.9003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  15  3....KLLKPGKVIIILNGRRAGKKAVIVNTYEGQYCLVAGPLKVNKSKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLG................................................................................................................................ 115
28 -10.6003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  22  3....KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGHALVAGPLKVTKKKVVNYNHLLPTRYTLDVE-----------AFKSVVSTETFEQPSQREEAKKVVKKAFEE................................................................................................................ 120
29 -10.6005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  19  2....SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGYAIVMGIEKYPKKKAVNFNHVMLTRHNVKDE-------DFFKKISVEKVVAALKDAPAKKALLTEYAAVLRQ................................................................................................................ 123
30 -10.5003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  23  3....KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGHALVAGPRKVTAAKVYNYNHLMPTRYSVDIP-----------LDKTVVNKDVFRDPALKRKARREAKVKFEE................................................................................................................ 120
31 -10.2003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  13  30...RKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVSGP-NGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKKKTPVSDARAQLQKKIDAALIAAIKKDAQGK................................................................................ 172
32 -10.2003j92_E mol:protein length:284 eL6  ali model follow..  23  137...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRK..................................................................................................................................... 220
33 -9.8205i4d_A mol:protein length:343 Superantigen-like protein  ali model follow..  19  12...............................................................................................................................EKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKTLNISATPAPKQEQSQT 102
34 -9.6704d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  23  141...RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRK..................................................................................................................................... 224
35 -9.4205lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  23  144...RASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRK..................................................................................................................................... 227
36 -9.2004rco_A mol:protein length:295 Putative uncharacterized protein  ali model follow..  17  3................................................................................................................................SSENLYFQGTTLSSTKVEAPQSTPPSTKIEAPQSKPNATTPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQ 92

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.