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Query: 5lzs_l mol:protein length:51 Uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50
# Score Template Links and tools%idFirst MSSHKTFRIKRFLAKKQKQNRPIPQWIWMKTGNKIRYNSKRRHWRRTKLGLLast
1 -42.6005lzs_l mol:protein length:51 Uncharacterized protein  ali model  100  1MSSHKTFRIKRFLAKKQKQNRPIPQWIWMKTGNKIRYNSKRRHWRRTKLGL 51
2 -42.6005xy3_l mol:protein length:51 60S ribosomal protein L39, putative  ali model follow..  49  1MAAHKTLRTKRILCKAMKVNRPMPQFIRQMTGVRHIRNPLTRHWRRRKMNI 51
3 -42.5003j7o_l mol:protein length:51 Ribosomal protein eL39  ali model follow..  98  1MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
4 -42.3003j79_e mol:protein length:51 60S ribosomal protein eL39  ali model follow..  62  1MGSIKRFRLKQRLGKCRRQNRPVPHWYRLKKDTKIRYNTKRRHWRRTKLGL 51
5 -42.1002ww9_O mol:protein length:51 60S RIBOSOMAL PROTEIN L39  ali model follow..  60  1MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMNI 51
6 -41.9005xxb_k mol:protein length:51 Ribosomal protein eL39  ali model follow..  68  1MGSIKGLSLKKHLGRKQKQNRPIPPWIRMRTGSKIRYNAKRRHWRRTKLGM 51
7 -41.7003jcs_l mol:protein length:51 ribosomal protein L39e  ali model follow..  52  1MGRFKPLAVKKKYAKKMNQNKPVPYWIRLRTGNRIKWNEKRRHWRRTKLNY 51
8 -40.0005t5h_q mol:protein length:50 Ribosomal protein L39  ali model follow..  57  1.GRFKPLAIKKKYAKKLKQNRPVPYWIRLRTGNRIKWNEKRRHWRRTKLHY 50
9 -38.9001ffk_Y mol:protein length:49 RIBOSOMAL PROTEIN L39E  ali model follow..  35  1..GKKSKATKKRKAKLDNQNSRVPAYVMLKTDREVQRNHKRRHWRRNDTD. 48
10 -38.6001s72_2 mol:protein length:50 50S ribosomal protein L39e  ali model follow..  39  2..GKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTD. 49
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.