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Query: 5mlc_T mol:protein length:256 50S ribosomal protein L21, chloroplastic, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVEAKEEAEAEAEAEAVPVLast
1 -87.1005mlc_T mol:protein length:256 50S ribosomal protein L21, chloroplastic  ali model  100  1MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVEAKEEAEAEAEAEAVPV 256
2 -60.8004ce4_V mol:protein length:207 MRPL21  ali model follow..  19  1MAAAVAASVLQGTFGR------------------------LVSAYSRSVLRTSRPGTAPPWSAPRRLSSQHTSSLRGCVPKTSLGSPPWPDIVLPDPVEETRHHAEVVGQVNELIAAGRYGRLFAVVHFAGHQWKVTAEDLILIENELDVACGERIRLEKVLLVGADNFTLLGKPLLELVRVEATVIEKTESWPKINMKFQKRKNYQRKRITVNPQTVLRINSIEXXXX........................... 207
3 -60.6003j7y_S mol:protein length:205 bL21  ali model follow..  18  1MAASSLTVTLGRLASACSHS----------------------------ILRPSGPGAASLWSASRRFNSQSTSYLPGYVPKTSLSSPPWPEVVLPDPVEETRHHAEVVKKVNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILIGNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKVRVEATVIEKTESWPRIIMRFRKRKNFKKKRIVTTPQTVLRINSIEIAPCL.......................... 204
4 -60.4004v19_V mol:protein length:209 MITORIBOSOMAL PROTEIN BL21M, MRPL21  ali model follow..  19  1MAAAVAASVLQGTFGR------------------------LVSAYSRSVLRTSRPGTAPPWSAPRRLSSQHTSSLRGCVPKTSLGSPPWPDIVLPDPVEETRHHAEVVGQVNELIAAGRYGRLFAVVHFAGHQWKVTAEDLILIENELDVACGERIRLEKVLLVGADNFTLLGKPLLGKVRVEATVIEKTESWPKINMKFQKRKNYQRKRITVNPQTVLRINSIEIAPCLC......................... 209
5 -51.3003j6b_N mol:protein length:161 54S ribosomal protein L49, mitochondrial  ali model follow..  18  11..............................................................................ARITPIYRPFTSHPFRNLATSSSISSTKAKTTKTDTTPLKLSNELYAIFKIHNRPYLVTEGDRVILPFLKQAEVGDILNMTDVTTLGSRNYKLVGHPINTSYTLKATVVGKTKRAFQTREVTKRRNRRVRHAKSKGDLTILRISELSMN............................. 161
6 -49.2002j28_R mol:protein length:103 50S RIBOSOMAL PROTEIN L21  ali model follow..  32  1..........................................................................................................................MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEF-AEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA.............................. 103
7 -48.9004v4i_P mol:protein length:101 50S ribosomal protein L21  ali model follow..  36  1..........................................................................................................................MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATV---ELPVLLLGGEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG.............................. 101
8 -47.3003j3v_R mol:protein length:102 50S ribosomal protein L21  ali model follow..  35  1..........................................................................................................................MYAIIKTGGKQIKVEEGQTVYIEKLAAEAGETVTF-EDVLFVGGDN-VKVGNPTVEGATVTAKVEKQGRAKKITVFRYKPKKNVHKKQGHRQPYTKVTIEKINA.............................. 102
9 -47.2004wce_O mol:protein length:102 50S ribosomal protein L21  ali model follow..  33  1..........................................................................................................................MFAIIETGGKQIKVEEGQEIFVEKLDVNEGDTFTF--DKVLFVGGDSVKVGAPTVEGATVTATVNKQGRGKKITVFTYKRRKNSKRKKGHRQPYTKLTIDKINA.............................. 102
10 -47.0005v7q_R mol:protein length:104 LSU ribosomal protein L21p  ali model follow..  28  3.........................................................................................................................ATYAIVKTGGKQYKVAVGDVVKVEKLESEQGEKVSL--PVALVVDGATVTTDAKALAKVAVTGEVLGHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIA............................... 104
11 -46.6005o60_S mol:protein length:103 50S ribosomal protein L21  ali model follow..  28  3..........................................................................................................................TYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSL-PVALVVDGAN-VTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK............................... 103
12 -46.0001nkw_P mol:protein length:100 50S ribosomal protein L21  ali model follow..  33  1..........................................................................................................................MFAIIQTGGKQYRVSEGDVIRVESLQGEAGDKVEL-KALFVGGE---QTVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGIQG.............................. 100
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.